HEADER OXIDOREDUCTASE 15-OCT-13 4N7A OBSLTE 22-JAN-20 4N7A 6LF7 TITLE CRYSTAL STRUCTURE OF GOAT LACTOPEROXIDASE WITH 3-AMINO PYRAZOLE AT TITLE 2 1.79 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOPEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 118-712 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAPRA HIRCUS; SOURCE 3 ORGANISM_COMMON: GOAT; SOURCE 4 ORGANISM_TAXID: 9925 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.K.TYAGI,R.P.SINGH,A.K.SINGH,A.SINGH,A.BHUSHAN,M.SINHA,P.KAUR, AUTHOR 2 S.SHARMA,T.P.SINGH REVDAT 2 22-JAN-20 4N7A 1 OBSLTE LINK REVDAT 1 06-NOV-13 4N7A 0 JRNL AUTH T.K.TYAGI,R.P.SINGH,A.K.SINGH,A.SINGH,A.BHUSHAN,M.SINHA, JRNL AUTH 2 P.KAUR,S.SHARMA,T.P.SINGH JRNL TITL CRYSTAL STRUCTURE OF GOAT LACTOPEROXIDASE WITH 3-AMINO JRNL TITL 2 PYRAZOLE AT 1.79 ANGSTROM RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 54040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2871 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3485 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4758 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 146 REMARK 3 SOLVENT ATOMS : 387 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.27000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : 0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.83000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.771 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.024 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 2.062 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; 7.449 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ;36.466 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ;16.981 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ;17.762 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.143 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; 0.013 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 595 REMARK 3 RESIDUE RANGE : A 601 A 619 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1284 -0.4822 22.0383 REMARK 3 T TENSOR REMARK 3 T11: 0.0415 T22: 0.0868 REMARK 3 T33: 0.0509 T12: -0.0222 REMARK 3 T13: 0.0051 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.7642 L22: 1.6311 REMARK 3 L33: 0.4158 L12: 0.5462 REMARK 3 L13: -0.0213 L23: -0.5382 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: 0.0390 S13: 0.0743 REMARK 3 S21: -0.1193 S22: 0.1156 S23: 0.2276 REMARK 3 S31: 0.0488 S32: -0.0447 S33: -0.0964 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4N7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57584 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 73.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 35.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3SXV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM NITRATE, PEG, PH 6.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.36550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 85 CZ TYR A 85 CE2 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 168 C - N - CD ANGL. DEV. = -18.5 DEGREES REMARK 500 PRO A 170 C - N - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 177 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 297 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 297 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 526 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 8 43.85 -152.67 REMARK 500 LEU A 12 91.85 -69.35 REMARK 500 GLU A 17 -8.98 59.20 REMARK 500 ALA A 56 -22.38 -160.06 REMARK 500 GLU A 123 72.20 9.37 REMARK 500 ASP A 137 -121.89 56.19 REMARK 500 ASN A 147 -10.37 93.29 REMARK 500 CYS A 167 -28.92 108.58 REMARK 500 PRO A 168 -118.45 -130.47 REMARK 500 PRO A 170 94.44 41.34 REMARK 500 TYR A 172 -131.20 -114.24 REMARK 500 GLN A 173 20.22 -163.81 REMARK 500 SER A 174 -68.64 -107.20 REMARK 500 ASP A 188 19.62 -145.00 REMARK 500 PRO A 209 41.44 -73.34 REMARK 500 HIS A 245 61.04 30.47 REMARK 500 ASN A 284 79.17 -116.75 REMARK 500 GLU A 371 41.62 -107.81 REMARK 500 ASP A 389 47.63 -140.67 REMARK 500 THR A 425 -15.07 87.95 REMARK 500 LYS A 427 -18.29 63.24 REMARK 500 ASN A 473 110.93 -166.61 REMARK 500 LYS A 485 -24.48 74.29 REMARK 500 PRO A 589 -7.28 -58.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 168 THR A 169 -141.04 REMARK 500 THR A 169 PRO A 170 -134.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 O REMARK 620 2 SER A 190 OG 82.3 REMARK 620 3 PHE A 186 O 116.4 152.3 REMARK 620 4 ASP A 110 OD1 76.5 86.5 79.0 REMARK 620 5 THR A 184 O 78.1 121.2 84.3 139.1 REMARK 620 6 ASP A 188 OD1 145.5 75.9 77.7 75.8 136.2 REMARK 620 7 THR A 184 OG1 135.5 88.8 90.5 146.5 69.6 70.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 604 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 351 NE2 REMARK 620 2 HEM A 604 NA 99.7 REMARK 620 3 HEM A 604 NB 97.4 88.8 REMARK 620 4 HEM A 604 NC 88.3 171.9 91.3 REMARK 620 5 HEM A 604 ND 89.9 88.5 172.6 90.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 617 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 618 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 619 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 620 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 621 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3AX A 622 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 623 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 624 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 625 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SXV RELATED DB: PDB REMARK 900 MODEL PDB DBREF 4N7A A 1 595 UNP A3F9D6 A3F9D6_CAPHI 118 712 SEQRES 1 A 595 SER TRP GLU VAL GLY CYS GLY ALA PRO VAL PRO LEU VAL SEQRES 2 A 595 THR CYS ASP GLU GLN SER PRO TYR ARG THR ILE THR GLY SEQRES 3 A 595 ASP CYS ASN ASN ARG ARG SER PRO ALA LEU GLY ALA ALA SEQRES 4 A 595 ASN ARG ALA LEU ALA ARG TRP LEU PRO ALA GLU TYR GLU SEQRES 5 A 595 ASP GLY LEU ALA VAL PRO PHE GLY TRP THR GLN ARG LYS SEQRES 6 A 595 THR ARG ASN GLY PHE ARG VAL PRO LEU ALA ARG GLU VAL SEQRES 7 A 595 SER ASN LYS ILE VAL GLY TYR LEU ASP GLU GLU GLY VAL SEQRES 8 A 595 LEU ASP GLN ASN ARG SER LEU LEU PHE MET GLN TRP GLY SEQRES 9 A 595 GLN ILE VAL ASP HIS ASP LEU ASP PHE ALA PRO GLU THR SEQRES 10 A 595 GLU LEU GLY SER SER GLU HIS SER LYS VAL GLN CYS GLU SEQRES 11 A 595 GLU TYR CYS VAL GLN GLY ASP GLU CYS PHE PRO ILE MET SEQRES 12 A 595 PHE PRO LYS ASN ASP PRO LYS LEU LYS THR GLN GLY LYS SEQRES 13 A 595 CYS MET PRO PHE PHE ARG ALA GLY PHE VAL CYS PRO THR SEQRES 14 A 595 PRO PRO TYR GLN SER LEU ALA ARG ASP GLN ILE ASN ALA SEQRES 15 A 595 VAL THR SER PHE LEU ASP ALA SER LEU VAL TYR GLY SER SEQRES 16 A 595 GLU PRO SEP LEU ALA SER ARG LEU ARG ASN LEU SER SER SEQRES 17 A 595 PRO LEU GLY LEU MET ALA VAL ASN GLN GLU ALA TRP ASP SEQRES 18 A 595 HIS GLY LEU ALA TYR PRO PRO PHE ASN ASN VAL LYS PRO SEQRES 19 A 595 SER PRO CYS GLU PHE ILE ASN THR THR ALA HIS VAL PRO SEQRES 20 A 595 CYS PHE GLN ALA GLY ASP SER ARG ALA SER GLU GLN ILE SEQRES 21 A 595 LEU LEU ALA THR VAL HIS THR LEU LEU LEU ARG GLU HIS SEQRES 22 A 595 ASN ARG LEU ALA ARG GLU LEU LYS ARG LEU ASN PRO HIS SEQRES 23 A 595 TRP ASP GLY GLU MET LEU TYR GLN GLU ALA ARG LYS ILE SEQRES 24 A 595 LEU GLY ALA PHE ILE GLN ILE ILE THR PHE ARG ASP TYR SEQRES 25 A 595 LEU PRO ILE VAL LEU GLY SER GLU MET GLN LYS TRP ILE SEQRES 26 A 595 PRO PRO TYR GLN GLY TYR ASN ASN SER VAL ASP PRO ARG SEQRES 27 A 595 ILE SER ASN VAL PHE THR PHE ALA PHE ARG PHE GLY HIS SEQRES 28 A 595 MET GLU VAL PRO SER THR VAL SER ARG LEU ASP GLU ASN SEQRES 29 A 595 TYR GLN PRO TRP GLY PRO GLU ALA GLU LEU PRO LEU HIS SEQRES 30 A 595 THR LEU PHE PHE ASN THR TRP ARG ILE ILE LYS ASP GLY SEQRES 31 A 595 GLY ILE ASP PRO LEU VAL ARG GLY LEU LEU ALA LYS ASN SEQRES 32 A 595 SER LYS LEU MET ASN GLN ASN LYS MET VAL THR SER GLU SEQRES 33 A 595 LEU ARG ASN LYS LEU PHE GLN PRO THR HIS LYS VAL HIS SEQRES 34 A 595 GLY PHE ASP LEU ALA ALA ILE ASN LEU GLN ARG CYS ARG SEQRES 35 A 595 ASP HIS GLY MET PRO GLY TYR ASN SER TRP ARG GLY PHE SEQRES 36 A 595 CYS GLY LEU SER GLN PRO LYS THR LEU LYS GLY LEU GLN SEQRES 37 A 595 ALA VAL LEU LYS ASN LYS VAL LEU ALA LYS LYS LEU LEU SEQRES 38 A 595 ASP LEU TYR LYS THR PRO ASP ASN ILE ASP ILE TRP ILE SEQRES 39 A 595 GLY GLY ASN ALA GLU PRO MET VAL GLU ARG GLY ARG VAL SEQRES 40 A 595 GLY PRO LEU LEU ALA CYS LEU LEU GLY ARG GLN PHE GLN SEQRES 41 A 595 GLN ILE ARG ASP GLY ASP ARG PHE TRP TRP GLU ASN PRO SEQRES 42 A 595 GLY VAL PHE THR GLU LYS GLN ARG ASP SER LEU GLN LYS SEQRES 43 A 595 VAL SER PHE SER ARG LEU ILE CYS ASP ASN THR HIS ILE SEQRES 44 A 595 THR LYS VAL PRO LEU HIS ALA PHE GLN ALA ASN ASN TYR SEQRES 45 A 595 PRO HIS ASP PHE VAL ASP CYS SER ALA VAL ASP LYS LEU SEQRES 46 A 595 ASP LEU SER PRO TRP ALA SER ARG GLU ASN MODRES 4N7A ASN A 241 ASN GLYCOSYLATION SITE MODRES 4N7A ASN A 332 ASN GLYCOSYLATION SITE MODRES 4N7A ASN A 95 ASN GLYCOSYLATION SITE MODRES 4N7A ASN A 205 ASN GLYCOSYLATION SITE MODRES 4N7A SEP A 198 SER PHOSPHOSERINE HET SEP A 198 10 HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HET HEM A 604 43 HET CA A 605 1 HET IOD A 606 1 HET IOD A 607 1 HET IOD A 608 1 HET IOD A 609 1 HET IOD A 610 1 HET IOD A 611 1 HET IOD A 612 1 HET SCN A 613 3 HET EDO A 614 4 HET EDO A 615 4 HET EDO A 616 4 HET EDO A 617 4 HET EDO A 618 4 HET GOL A 619 6 HET IOD A 620 1 HET IOD A 621 1 HET 3AX A 622 6 HET IOD A 623 1 HET IOD A 624 1 HET NAG A 625 14 HETNAM SEP PHOSPHOSERINE HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM IOD IODIDE ION HETNAM SCN THIOCYANATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM 3AX 1H-PYRAZOL-5-AMINE HETSYN SEP PHOSPHONOSERINE HETSYN HEM HEME HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 3AX 3-AMINOPYRAZOLE FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 5 HEM C34 H32 FE N4 O4 FORMUL 6 CA CA 2+ FORMUL 7 IOD 11(I 1-) FORMUL 14 SCN C N S 1- FORMUL 15 EDO 5(C2 H6 O2) FORMUL 20 GOL C3 H8 O3 FORMUL 23 3AX C3 H5 N3 FORMUL 27 HOH *387(H2 O) HELIX 1 1 LEU A 74 VAL A 83 1 10 HELIX 2 2 LEU A 98 ASP A 112 1 15 HELIX 3 3 SER A 125 GLU A 131 1 7 HELIX 4 4 ASP A 148 GLY A 155 1 8 HELIX 5 5 ALA A 189 GLY A 194 1 6 HELIX 6 6 GLU A 196 LEU A 203 1 8 HELIX 7 7 SER A 235 ILE A 240 1 6 HELIX 8 8 GLN A 259 ASN A 284 1 26 HELIX 9 9 ASP A 288 ASP A 311 1 24 HELIX 10 10 TYR A 312 GLY A 318 1 7 HELIX 11 11 GLU A 320 ILE A 325 1 6 HELIX 12 12 SER A 340 PHE A 347 1 8 HELIX 13 13 ARG A 348 VAL A 354 5 7 HELIX 14 14 HIS A 377 PHE A 380 5 4 HELIX 15 15 THR A 383 LYS A 388 1 6 HELIX 16 16 GLY A 391 LYS A 402 1 12 HELIX 17 17 THR A 414 ASN A 419 1 6 HELIX 18 18 ASP A 432 HIS A 444 1 13 HELIX 19 19 GLY A 448 CYS A 456 1 9 HELIX 20 20 THR A 463 LYS A 472 1 10 HELIX 21 21 ASN A 473 LYS A 485 1 13 HELIX 22 22 THR A 486 ILE A 490 5 5 HELIX 23 23 ASP A 491 GLU A 499 1 9 HELIX 24 24 GLY A 508 GLY A 525 1 18 HELIX 25 25 THR A 537 GLN A 545 1 9 HELIX 26 26 SER A 548 THR A 557 1 10 HELIX 27 27 SER A 580 VAL A 582 5 3 HELIX 28 28 LEU A 587 ALA A 591 5 5 SHEET 1 A 2 ARG A 41 ALA A 42 0 SHEET 2 A 2 ILE A 180 ASN A 181 -1 O ASN A 181 N ARG A 41 SHEET 1 B 2 LEU A 92 SER A 97 0 SHEET 2 B 2 ASN A 403 LYS A 405 -1 O SER A 404 N ASP A 93 SHEET 1 C 2 ILE A 142 MET A 143 0 SHEET 2 C 2 CYS A 157 MET A 158 -1 O MET A 158 N ILE A 142 SHEET 1 D 2 THR A 357 SER A 359 0 SHEET 2 D 2 GLU A 373 PRO A 375 -1 O LEU A 374 N VAL A 358 SHEET 1 E 2 LEU A 421 PHE A 422 0 SHEET 2 E 2 HIS A 429 PHE A 431 -1 O PHE A 431 N LEU A 421 SHEET 1 F 2 LYS A 561 PRO A 563 0 SHEET 2 F 2 PHE A 576 ASP A 578 -1 O VAL A 577 N VAL A 562 SSBOND 1 CYS A 6 CYS A 167 1555 1555 2.01 SSBOND 2 CYS A 15 CYS A 28 1555 1555 2.08 SSBOND 3 CYS A 129 CYS A 139 1555 1555 2.05 SSBOND 4 CYS A 133 CYS A 157 1555 1555 2.07 SSBOND 5 CYS A 237 CYS A 248 1555 1555 2.05 SSBOND 6 CYS A 456 CYS A 513 1555 1555 2.07 SSBOND 7 CYS A 554 CYS A 579 1555 1555 2.05 LINK C PRO A 197 N SEP A 198 1555 1555 1.35 LINK C SEP A 198 N LEU A 199 1555 1555 1.32 LINK ND2 ASN A 241 C1 NAG A 603 1555 1555 1.43 LINK ND2 ASN A 332 C1 NAG A 625 1555 1555 1.44 LINK ND2 ASN A 95 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 205 C1 NAG A 602 1555 1555 1.46 LINK O ASP A 110 CA CA A 605 1555 1555 2.20 LINK NE2 HIS A 351 FE HEM A 604 1555 1555 2.26 LINK OG SER A 190 CA CA A 605 1555 1555 2.27 LINK O PHE A 186 CA CA A 605 1555 1555 2.29 LINK OD1 ASP A 110 CA CA A 605 1555 1555 2.37 LINK O THR A 184 CA CA A 605 1555 1555 2.40 LINK OD1 ASP A 188 CA CA A 605 1555 1555 2.45 LINK OG1 THR A 184 CA CA A 605 1555 1555 2.46 LINK OD2 ASP A 108 CMD HEM A 604 1555 1555 1.44 LINK OE2 GLU A 258 CMB HEM A 604 1555 1555 1.67 CISPEP 1 CYS A 167 PRO A 168 0 -19.82 CISPEP 2 LYS A 233 PRO A 234 0 8.19 CISPEP 3 TYR A 572 PRO A 573 0 9.40 SITE 1 AC1 4 ASN A 95 PRO A 209 ILE A 315 HOH A 723 SITE 1 AC2 8 ASN A 205 SER A 208 ALA A 214 VAL A 215 SITE 2 AC2 8 GLN A 217 HOH A 960 HOH A 977 HOH A1075 SITE 1 AC3 4 ASN A 241 ALA A 244 HOH A 925 HOH A1061 SITE 1 AC4 26 MET A 101 GLY A 104 GLN A 105 ASP A 108 SITE 2 AC4 26 ASP A 112 PHE A 113 ALA A 114 ARG A 255 SITE 3 AC4 26 GLU A 258 GLN A 259 THR A 344 PHE A 347 SITE 4 AC4 26 ARG A 348 GLY A 350 HIS A 351 VAL A 354 SITE 5 AC4 26 LEU A 417 GLN A 423 LEU A 433 ILE A 436 SITE 6 AC4 26 ARG A 440 3AX A 622 HOH A 785 HOH A 998 SITE 7 AC4 26 HOH A1041 HOH A1062 SITE 1 AC5 5 ASP A 110 THR A 184 PHE A 186 ASP A 188 SITE 2 AC5 5 SER A 190 SITE 1 AC6 2 TRP A 46 VAL A 342 SITE 1 AC7 1 PHE A 229 SITE 1 AC8 1 ASN A 80 SITE 1 AC9 2 ARG A 96 HOH A1071 SITE 1 BC1 4 HIS A 565 ALA A 566 PHE A 567 HOH A 723 SITE 1 BC2 3 PRO A 236 THR A 425 HOH A1080 SITE 1 BC3 1 ARG A 31 SITE 1 BC4 2 ASN A 230 HOH A 970 SITE 1 BC5 3 HIS A 377 HIS A 429 HOH A1082 SITE 1 BC6 4 ALA A 35 LEU A 36 ARG A 338 HOH A 762 SITE 1 BC7 2 PRO A 197 LYS A 472 SITE 1 BC8 2 ALA A 219 PHE A 229 SITE 1 BC9 6 SER A 359 LEU A 361 PRO A 367 LYS A 402 SITE 2 BC9 6 HOH A 708 HOH A1008 SITE 1 CC1 7 ARG A 76 ASN A 80 PRO A 149 ARG A 418 SITE 2 CC1 7 ASN A 419 HOH A 994 HOH A 995 SITE 1 CC2 1 HOH A1038 SITE 1 CC3 3 LEU A 86 ASP A 87 HOH A 767 SITE 1 CC4 6 HIS A 109 ARG A 255 GLU A 258 HEM A 604 SITE 2 CC4 6 HOH A1041 HOH A1066 SITE 1 CC5 2 ARG A 397 THR A 560 SITE 1 CC6 1 TRP A 530 SITE 1 CC7 2 ASN A 332 HOH A 871 CRYST1 53.881 80.731 75.139 90.00 101.53 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018559 0.000000 0.003784 0.00000 SCALE2 0.000000 0.012387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013583 0.00000