HEADER OXIDOREDUCTASE 15-OCT-13 4N7B TITLE STRUCTURE OF THE E-1-HYDROXY-2-METHYL-BUT-2-ENYL-4-DIPHOSPHATE TITLE 2 REDUCTASE FROM PLASMODIUM FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYTB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 GENE: LYTB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IRON-SULFUR-CLUSTER BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.REKITTKE,H.JOMAA,U.ERMLER REVDAT 4 28-FEB-24 4N7B 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4N7B 1 REMARK REVDAT 2 18-DEC-13 4N7B 1 JRNL REVDAT 1 20-NOV-13 4N7B 0 JRNL AUTH I.REKITTKE,E.OLKHOVA,J.WIESNER,U.DEMMER,E.WARKENTIN,H.JOMAA, JRNL AUTH 2 U.ERMLER JRNL TITL STRUCTURE OF THE JRNL TITL 2 (E)-4-HYDROXY-3-METHYL-BUT-2-ENYL-DIPHOSPHATE REDUCTASE FROM JRNL TITL 3 PLASMODIUM FALCIPARUM. JRNL REF FEBS LETT. V. 587 3968 2013 JRNL REFN ISSN 0014-5793 JRNL PMID 24188825 JRNL DOI 10.1016/J.FEBSLET.2013.10.029 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0558 - 4.8870 0.98 2719 145 0.1516 0.1607 REMARK 3 2 4.8870 - 3.8798 0.99 2657 148 0.1259 0.1450 REMARK 3 3 3.8798 - 3.3896 1.00 2648 148 0.1476 0.1766 REMARK 3 4 3.3896 - 3.0798 1.00 2637 141 0.1704 0.1882 REMARK 3 5 3.0798 - 2.8591 1.00 2645 135 0.1936 0.2043 REMARK 3 6 2.8591 - 2.6906 1.00 2621 137 0.2015 0.2473 REMARK 3 7 2.6906 - 2.5559 1.00 2612 150 0.2096 0.2468 REMARK 3 8 2.5559 - 2.4446 1.00 2613 135 0.2292 0.2932 REMARK 3 9 2.4446 - 2.3505 1.00 2611 138 0.2226 0.2464 REMARK 3 10 2.3505 - 2.2694 1.00 2603 139 0.2374 0.3209 REMARK 3 11 2.2694 - 2.1985 1.00 2627 124 0.2602 0.2788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2636 REMARK 3 ANGLE : 1.132 3573 REMARK 3 CHIRALITY : 0.068 415 REMARK 3 PLANARITY : 0.004 450 REMARK 3 DIHEDRAL : 19.112 1000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2572 27.3370 -18.6885 REMARK 3 T TENSOR REMARK 3 T11: 0.2470 T22: 0.2120 REMARK 3 T33: 0.2304 T12: 0.0762 REMARK 3 T13: -0.0665 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.4876 L22: 1.4046 REMARK 3 L33: 1.6162 L12: -0.1388 REMARK 3 L13: -0.4004 L23: -0.4006 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: 0.2958 S13: -0.0670 REMARK 3 S21: -0.3236 S22: 0.0805 S23: 0.2991 REMARK 3 S31: -0.0966 S32: -0.0569 S33: -0.0202 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5153 19.1756 -11.6463 REMARK 3 T TENSOR REMARK 3 T11: 0.3188 T22: 0.5344 REMARK 3 T33: 0.7651 T12: 0.0287 REMARK 3 T13: 0.0090 T23: 0.0518 REMARK 3 L TENSOR REMARK 3 L11: 1.5544 L22: 1.2095 REMARK 3 L33: 0.6504 L12: 0.0573 REMARK 3 L13: -0.0446 L23: 0.1765 REMARK 3 S TENSOR REMARK 3 S11: 0.1329 S12: -0.0429 S13: 0.0715 REMARK 3 S21: 0.2251 S22: 0.0211 S23: 1.1121 REMARK 3 S31: -0.0803 S32: -0.5050 S33: -0.1226 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3712 6.9365 -5.9762 REMARK 3 T TENSOR REMARK 3 T11: 0.4030 T22: 0.2771 REMARK 3 T33: 0.3843 T12: -0.0445 REMARK 3 T13: 0.0021 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.1838 L22: 1.7265 REMARK 3 L33: 1.6485 L12: 0.4064 REMARK 3 L13: -0.0453 L23: -0.2652 REMARK 3 S TENSOR REMARK 3 S11: 0.0957 S12: -0.1071 S13: -0.1852 REMARK 3 S21: 0.2236 S22: 0.0361 S23: 0.5851 REMARK 3 S31: 0.4001 S32: -0.2997 S33: -0.0925 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7708 4.8551 4.8304 REMARK 3 T TENSOR REMARK 3 T11: 0.7334 T22: 0.3654 REMARK 3 T33: 0.3786 T12: -0.0717 REMARK 3 T13: -0.0276 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 1.4328 L22: 2.0527 REMARK 3 L33: 1.7462 L12: 0.4282 REMARK 3 L13: -0.4874 L23: -0.3878 REMARK 3 S TENSOR REMARK 3 S11: 0.2294 S12: -0.3802 S13: -0.2536 REMARK 3 S21: 0.8790 S22: -0.0656 S23: 0.2212 REMARK 3 S31: 0.4446 S32: 0.0678 S33: -0.1101 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 170 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.9360 13.5887 -3.8699 REMARK 3 T TENSOR REMARK 3 T11: 0.3714 T22: 0.3009 REMARK 3 T33: 0.2504 T12: 0.0339 REMARK 3 T13: -0.0323 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.6074 L22: 2.7014 REMARK 3 L33: 1.0585 L12: 0.2690 REMARK 3 L13: -0.1871 L23: -0.8721 REMARK 3 S TENSOR REMARK 3 S11: 0.1381 S12: -0.1331 S13: -0.2034 REMARK 3 S21: 0.1832 S22: -0.1994 S23: -0.2595 REMARK 3 S31: 0.2713 S32: 0.2598 S33: 0.0771 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.8521 29.1509 -3.6880 REMARK 3 T TENSOR REMARK 3 T11: 0.2604 T22: 0.2864 REMARK 3 T33: 0.1708 T12: 0.0315 REMARK 3 T13: 0.0154 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.4381 L22: 1.6056 REMARK 3 L33: 1.6044 L12: 0.0032 REMARK 3 L13: 0.6919 L23: -0.0378 REMARK 3 S TENSOR REMARK 3 S11: 0.1324 S12: -0.0793 S13: 0.0309 REMARK 3 S21: 0.4135 S22: -0.0538 S23: 0.1350 REMARK 3 S31: 0.0125 S32: 0.0596 S33: -0.0594 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.1748 39.7044 -10.9841 REMARK 3 T TENSOR REMARK 3 T11: 0.3844 T22: 0.2613 REMARK 3 T33: 0.2341 T12: 0.0463 REMARK 3 T13: 0.0170 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.7664 L22: 1.9483 REMARK 3 L33: 1.7916 L12: 0.2671 REMARK 3 L13: -0.0790 L23: -0.8542 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.1341 S13: 0.2420 REMARK 3 S21: 0.1925 S22: -0.0341 S23: 0.1630 REMARK 3 S31: -0.5317 S32: -0.1177 S33: 0.0037 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5518 14.3509 -26.8200 REMARK 3 T TENSOR REMARK 3 T11: 0.5685 T22: 0.5493 REMARK 3 T33: 0.4634 T12: -0.0108 REMARK 3 T13: -0.1934 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.9078 L22: 1.4368 REMARK 3 L33: 2.3766 L12: -0.0178 REMARK 3 L13: 1.2066 L23: 0.7300 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.8644 S13: 0.0377 REMARK 3 S21: -0.6745 S22: 0.1451 S23: 0.4034 REMARK 3 S31: 0.0941 S32: -0.1994 S33: -0.1361 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30552 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.198 REMARK 200 RESOLUTION RANGE LOW (A) : 42.048 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % W/V PEG 4000, 100 MM SODIUM REMARK 280 CITRATE (PH 5.6), 100 MM AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.64333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.28667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.28667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.64333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -216 REMARK 465 SER A -215 REMARK 465 VAL A -214 REMARK 465 THR A -213 REMARK 465 THR A -212 REMARK 465 PHE A -211 REMARK 465 CYS A -210 REMARK 465 SER A -209 REMARK 465 LEU A -208 REMARK 465 LYS A -207 REMARK 465 LYS A -206 REMARK 465 THR A -205 REMARK 465 ASP A -204 REMARK 465 LYS A -203 REMARK 465 CYS A -202 REMARK 465 ASN A -201 REMARK 465 ILE A -200 REMARK 465 TYR A -199 REMARK 465 ILE A -198 REMARK 465 SER A -197 REMARK 465 LYS A -196 REMARK 465 ARG A -195 REMARK 465 ALA A -194 REMARK 465 PHE A -193 REMARK 465 SER A -192 REMARK 465 VAL A -191 REMARK 465 PHE A -190 REMARK 465 LEU A -189 REMARK 465 PHE A -188 REMARK 465 TYR A -187 REMARK 465 LEU A -186 REMARK 465 PHE A -185 REMARK 465 PHE A -184 REMARK 465 PHE A -183 REMARK 465 LEU A -182 REMARK 465 PHE A -181 REMARK 465 PHE A -180 REMARK 465 HIS A -179 REMARK 465 PHE A -178 REMARK 465 TYR A -177 REMARK 465 PHE A -176 REMARK 465 LEU A -175 REMARK 465 CYS A -174 REMARK 465 SER A -173 REMARK 465 SER A -172 REMARK 465 SER A -171 REMARK 465 PHE A -170 REMARK 465 ALA A -169 REMARK 465 VAL A -168 REMARK 465 ILE A -167 REMARK 465 ILE A -166 REMARK 465 HIS A -165 REMARK 465 GLU A -164 REMARK 465 SER A -163 REMARK 465 GLU A -162 REMARK 465 LYS A -161 REMARK 465 ARG A -160 REMARK 465 LYS A -159 REMARK 465 ASN A -158 REMARK 465 ILE A -157 REMARK 465 MET A -156 REMARK 465 ARG A -155 REMARK 465 ARG A -154 REMARK 465 LYS A -153 REMARK 465 ARG A -152 REMARK 465 SER A -151 REMARK 465 ILE A -150 REMARK 465 LEU A -149 REMARK 465 GLN A -148 REMARK 465 ILE A -147 REMARK 465 PHE A -146 REMARK 465 GLU A -145 REMARK 465 ASN A -144 REMARK 465 SER A -143 REMARK 465 ILE A -142 REMARK 465 LYS A -141 REMARK 465 SER A -140 REMARK 465 LYS A -139 REMARK 465 GLU A -138 REMARK 465 GLY A -137 REMARK 465 LYS A -136 REMARK 465 CYS A -135 REMARK 465 ASN A -134 REMARK 465 PHE A -133 REMARK 465 THR A -132 REMARK 465 LYS A -131 REMARK 465 ARG A -130 REMARK 465 TYR A -129 REMARK 465 ILE A -128 REMARK 465 THR A -127 REMARK 465 HIS A -126 REMARK 465 TYR A -125 REMARK 465 TYR A -124 REMARK 465 ASN A -123 REMARK 465 ILE A -122 REMARK 465 PRO A -121 REMARK 465 LEU A -120 REMARK 465 LYS A -119 REMARK 465 ILE A -118 REMARK 465 LYS A -117 REMARK 465 LYS A -116 REMARK 465 HIS A -115 REMARK 465 ASP A -114 REMARK 465 LEU A -113 REMARK 465 PRO A -112 REMARK 465 SER A -111 REMARK 465 VAL A -110 REMARK 465 ILE A -109 REMARK 465 LYS A -108 REMARK 465 TYR A -107 REMARK 465 PHE A -106 REMARK 465 SER A -105 REMARK 465 HIS A -104 REMARK 465 LYS A -103 REMARK 465 PRO A -102 REMARK 465 ASN A -101 REMARK 465 GLY A -100 REMARK 465 LYS A -99 REMARK 465 HIS A -98 REMARK 465 ASN A -97 REMARK 465 TYR A -96 REMARK 465 VAL A -95 REMARK 465 THR A -94 REMARK 465 ASN A -93 REMARK 465 MET A -92 REMARK 465 ILE A -91 REMARK 465 THR A -90 REMARK 465 GLN A -89 REMARK 465 LYS A -88 REMARK 465 ASN A -87 REMARK 465 ARG A -86 REMARK 465 LYS A -85 REMARK 465 SER A -84 REMARK 465 PHE A -83 REMARK 465 LEU A -82 REMARK 465 PHE A -81 REMARK 465 PHE A -80 REMARK 465 PHE A -79 REMARK 465 PHE A -78 REMARK 465 LEU A -77 REMARK 465 TYR A -76 REMARK 465 ASN A -75 REMARK 465 LYS A -74 REMARK 465 TYR A -73 REMARK 465 PHE A -72 REMARK 465 PHE A -71 REMARK 465 GLY A -70 REMARK 465 LYS A -69 REMARK 465 GLN A -68 REMARK 465 GLU A -67 REMARK 465 GLN A -66 REMARK 465 ILE A -65 REMARK 465 ARG A -64 REMARK 465 LYS A -63 REMARK 465 MET A -62 REMARK 465 ASN A -61 REMARK 465 TYR A -60 REMARK 465 HIS A -59 REMARK 465 GLU A -58 REMARK 465 GLU A -57 REMARK 465 MET A -56 REMARK 465 ASN A -55 REMARK 465 LYS A -54 REMARK 465 ILE A -53 REMARK 465 ASN A -52 REMARK 465 ILE A -51 REMARK 465 LYS A -50 REMARK 465 ASN A -49 REMARK 465 ASP A -48 REMARK 465 GLY A -47 REMARK 465 ASN A -46 REMARK 465 ARG A -45 REMARK 465 LYS A -44 REMARK 465 ILE A -43 REMARK 465 TYR A -42 REMARK 465 MET A -41 REMARK 465 TYR A -40 REMARK 465 PRO A -39 REMARK 465 LYS A -38 REMARK 465 ASN A -37 REMARK 465 ASP A -36 REMARK 465 ILE A -35 REMARK 465 HIS A -34 REMARK 465 GLU A -33 REMARK 465 GLU A -32 REMARK 465 ASP A -31 REMARK 465 GLY A -30 REMARK 465 ASP A -29 REMARK 465 HIS A -28 REMARK 465 LYS A -27 REMARK 465 ASN A -26 REMARK 465 ASP A -25 REMARK 465 VAL A -24 REMARK 465 GLU A -23 REMARK 465 ILE A -22 REMARK 465 ASN A -21 REMARK 465 GLN A -20 REMARK 465 LYS A -19 REMARK 465 ARG A -18 REMARK 465 ASN A -17 REMARK 465 GLU A -16 REMARK 465 GLN A -15 REMARK 465 ASN A -14 REMARK 465 CYS A -13 REMARK 465 LYS A -12 REMARK 465 SER A -11 REMARK 465 PHE A -10 REMARK 465 ASN A -9 REMARK 465 ASP A -8 REMARK 465 GLU A -7 REMARK 465 LYS A -6 REMARK 465 ASN A -5 REMARK 465 GLU A -4 REMARK 465 ASN A -3 REMARK 465 ALA A -2 REMARK 465 ARG A -1 REMARK 465 ASP A 0 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 304 O HOH A 688 1.53 REMARK 500 HH22 ARG A 83 OD2 ASP A 95 1.57 REMARK 500 O HOH A 548 O HOH A 622 1.93 REMARK 500 O LEU A 30 NH2 ARG A 316 2.00 REMARK 500 OE1 GLU A 188 O HOH A 580 2.03 REMARK 500 O PRO A 137 O HOH A 671 2.05 REMARK 500 O HOH A 647 O HOH A 652 2.08 REMARK 500 O HOH A 566 O HOH A 593 2.09 REMARK 500 NZ LYS A 304 O HOH A 688 2.11 REMARK 500 O HOH A 618 O HOH A 634 2.15 REMARK 500 O HOH A 630 O HOH A 655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 33 150.26 -38.17 REMARK 500 HIS A 39 164.04 59.28 REMARK 500 HIS A 39 160.19 74.50 REMARK 500 ALA A 136 60.51 -150.46 REMARK 500 LYS A 302 46.65 -99.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 14 SG REMARK 620 2 F3S A 401 S1 111.8 REMARK 620 3 F3S A 401 S2 117.8 109.8 REMARK 620 4 F3S A 401 S3 109.8 102.4 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S A 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 98 SG REMARK 620 2 F3S A 401 S1 109.8 REMARK 620 3 F3S A 401 S3 118.1 103.3 REMARK 620 4 F3S A 401 S4 116.1 107.4 100.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S A 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 196 SG REMARK 620 2 F3S A 401 S2 106.1 REMARK 620 3 F3S A 401 S3 118.8 104.2 REMARK 620 4 F3S A 401 S4 110.5 116.7 100.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 406 DBREF 4N7B A -216 318 UNP Q9BJX6 Q9BJX6_PLAFA 1 535 SEQADV 4N7B HIS A 319 UNP Q9BJX6 EXPRESSION TAG SEQADV 4N7B HIS A 320 UNP Q9BJX6 EXPRESSION TAG SEQADV 4N7B HIS A 321 UNP Q9BJX6 EXPRESSION TAG SEQADV 4N7B HIS A 322 UNP Q9BJX6 EXPRESSION TAG SEQADV 4N7B HIS A 323 UNP Q9BJX6 EXPRESSION TAG SEQADV 4N7B HIS A 324 UNP Q9BJX6 EXPRESSION TAG SEQRES 1 A 541 MET SER VAL THR THR PHE CYS SER LEU LYS LYS THR ASP SEQRES 2 A 541 LYS CYS ASN ILE TYR ILE SER LYS ARG ALA PHE SER VAL SEQRES 3 A 541 PHE LEU PHE TYR LEU PHE PHE PHE LEU PHE PHE HIS PHE SEQRES 4 A 541 TYR PHE LEU CYS SER SER SER PHE ALA VAL ILE ILE HIS SEQRES 5 A 541 GLU SER GLU LYS ARG LYS ASN ILE MET ARG ARG LYS ARG SEQRES 6 A 541 SER ILE LEU GLN ILE PHE GLU ASN SER ILE LYS SER LYS SEQRES 7 A 541 GLU GLY LYS CYS ASN PHE THR LYS ARG TYR ILE THR HIS SEQRES 8 A 541 TYR TYR ASN ILE PRO LEU LYS ILE LYS LYS HIS ASP LEU SEQRES 9 A 541 PRO SER VAL ILE LYS TYR PHE SER HIS LYS PRO ASN GLY SEQRES 10 A 541 LYS HIS ASN TYR VAL THR ASN MET ILE THR GLN LYS ASN SEQRES 11 A 541 ARG LYS SER PHE LEU PHE PHE PHE PHE LEU TYR ASN LYS SEQRES 12 A 541 TYR PHE PHE GLY LYS GLN GLU GLN ILE ARG LYS MET ASN SEQRES 13 A 541 TYR HIS GLU GLU MET ASN LYS ILE ASN ILE LYS ASN ASP SEQRES 14 A 541 GLY ASN ARG LYS ILE TYR MET TYR PRO LYS ASN ASP ILE SEQRES 15 A 541 HIS GLU GLU ASP GLY ASP HIS LYS ASN ASP VAL GLU ILE SEQRES 16 A 541 ASN GLN LYS ARG ASN GLU GLN ASN CYS LYS SER PHE ASN SEQRES 17 A 541 ASP GLU LYS ASN GLU ASN ALA ARG ASP PRO ASN LYS ILE SEQRES 18 A 541 LEU TYR LEU ILE ASN PRO ARG GLY PHE CYS LYS GLY VAL SEQRES 19 A 541 SER ARG ALA ILE GLU THR VAL GLU GLU CYS LEU LYS LEU SEQRES 20 A 541 PHE LYS PRO PRO ILE TYR VAL LYS HIS LYS ILE VAL HIS SEQRES 21 A 541 ASN ASP ILE VAL CYS LYS LYS LEU GLU LYS GLU GLY ALA SEQRES 22 A 541 ILE PHE ILE GLU ASP LEU ASN ASP VAL PRO ASP GLY HIS SEQRES 23 A 541 ILE LEU ILE TYR SER ALA HIS GLY ILE SER PRO GLN ILE SEQRES 24 A 541 ARG GLU ILE ALA LYS LYS LYS LYS LEU ILE GLU ILE ASP SEQRES 25 A 541 ALA THR CYS PRO LEU VAL ASN LYS VAL HIS VAL TYR VAL SEQRES 26 A 541 GLN MET LYS ALA LYS GLU ASN TYR ASP ILE ILE LEU ILE SEQRES 27 A 541 GLY TYR LYS ASN HIS VAL GLU VAL ILE GLY THR TYR ASN SEQRES 28 A 541 GLU ALA PRO HIS CYS THR HIS ILE VAL GLU ASN VAL ASN SEQRES 29 A 541 ASP VAL ASP LYS LEU ASN PHE PRO LEU ASN LYS LYS LEU SEQRES 30 A 541 PHE TYR VAL THR GLN THR THR LEU SER MET ASP ASP CYS SEQRES 31 A 541 ALA LEU ILE VAL GLN LYS LEU LYS ASN LYS PHE PRO HIS SEQRES 32 A 541 ILE GLU THR ILE PRO SER GLY SER ILE CYS TYR ALA THR SEQRES 33 A 541 THR ASN ARG GLN THR ALA LEU ASN LYS ILE CYS THR LYS SEQRES 34 A 541 CYS ASP LEU THR ILE VAL VAL GLY SER SER SER SER SER SEQRES 35 A 541 ASN ALA LYS LYS LEU VAL TYR SER SER GLN ILE ARG ASN SEQRES 36 A 541 VAL PRO ALA VAL LEU LEU ASN THR VAL HIS ASP LEU ASP SEQRES 37 A 541 GLN GLN ILE LEU LYS ASN VAL ASN LYS ILE ALA LEU THR SEQRES 38 A 541 SER ALA ALA SER THR PRO GLU GLN GLU THR GLN LYS PHE SEQRES 39 A 541 VAL ASN LEU LEU THR ASN PRO PRO PHE ASN TYR THR LEU SEQRES 40 A 541 GLN ASN PHE ASP GLY ALA HIS GLU ASN VAL PRO LYS TRP SEQRES 41 A 541 LYS LEU PRO LYS ASN PHE LEU HIS MET ILE LYS GLU ARG SEQRES 42 A 541 GLU LYS HIS HIS HIS HIS HIS HIS HET F3S A 401 7 HET SO4 A 402 5 HET SO4 A 403 5 HET GOL A 404 14 HET NA A 405 1 HET NA A 406 1 HETNAM F3S FE3-S4 CLUSTER HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 F3S FE3 S4 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 NA 2(NA 1+) FORMUL 8 HOH *189(H2 O) HELIX 1 1 CYS A 14 PHE A 31 1 18 HELIX 2 2 ASN A 44 GLY A 55 1 12 HELIX 3 3 ASP A 61 VAL A 65 5 5 HELIX 4 4 SER A 79 LYS A 89 1 11 HELIX 5 5 CYS A 98 LYS A 113 1 16 HELIX 6 6 HIS A 126 ASN A 134 1 9 HELIX 7 7 GLU A 135 HIS A 138 5 4 HELIX 8 8 ASN A 145 LEU A 152 1 8 HELIX 9 9 SER A 169 PHE A 184 1 16 HELIX 10 10 CYS A 196 THR A 211 1 16 HELIX 11 11 SER A 224 ILE A 236 1 13 HELIX 12 12 THR A 246 LEU A 250 5 5 HELIX 13 13 ASP A 251 LYS A 256 5 6 HELIX 14 14 PRO A 270 ASN A 283 1 14 HELIX 15 15 PRO A 306 GLU A 317 1 12 SHEET 1 A 5 ALA A 241 LEU A 244 0 SHEET 2 A 5 LEU A 215 VAL A 219 1 N VAL A 218 O VAL A 242 SHEET 3 A 5 LYS A 260 SER A 265 1 O ALA A 262 N ILE A 217 SHEET 4 A 5 ILE A 4 ASN A 9 1 N TYR A 6 O ILE A 261 SHEET 5 A 5 THR A 289 ASP A 294 1 O GLN A 291 N LEU A 7 SHEET 1 B 4 ALA A 56 ILE A 59 0 SHEET 2 B 4 ILE A 35 LYS A 38 1 N VAL A 37 O ILE A 57 SHEET 3 B 4 ILE A 70 TYR A 73 1 O ILE A 72 N LYS A 38 SHEET 4 B 4 ILE A 92 ASP A 95 1 O ILE A 94 N LEU A 71 SHEET 1 C 4 THR A 140 VAL A 143 0 SHEET 2 C 4 ASP A 117 ILE A 121 1 N ILE A 118 O HIS A 141 SHEET 3 C 4 LEU A 160 THR A 164 1 O VAL A 163 N ILE A 121 SHEET 4 C 4 GLU A 188 THR A 189 1 O GLU A 188 N TYR A 162 LINK SG CYS A 14 FE1 F3S A 401 1555 1555 2.31 LINK SG CYS A 98 FE3 F3S A 401 1555 1555 2.29 LINK OH TYR A 107 NA NA A 405 1555 1555 2.98 LINK SG CYS A 196 FE4 F3S A 401 1555 1555 2.29 CISPEP 1 ASN A 9 PRO A 10 0 -1.51 CISPEP 2 PRO A 33 PRO A 34 0 0.55 CISPEP 3 PRO A 284 PRO A 285 0 2.33 SITE 1 AC1 5 CYS A 14 CYS A 98 THR A 166 CYS A 196 SITE 2 AC1 5 HOH A 538 SITE 1 AC2 10 HIS A 43 HIS A 76 HIS A 126 THR A 167 SITE 2 AC2 10 SER A 224 SER A 225 ASN A 226 HOH A 505 SITE 3 AC2 10 HOH A 506 HOH A 648 SITE 1 AC3 3 ARG A 237 HOH A 568 HOH A 587 SITE 1 AC4 3 PHE A 13 GLU A 271 HOH A 617 SITE 1 AC5 1 TYR A 107 SITE 1 AC6 3 ALA A 136 PRO A 137 HIS A 138 CRYST1 115.960 115.960 76.930 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008624 0.004979 0.000000 0.00000 SCALE2 0.000000 0.009958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012999 0.00000