HEADER SIGNALING PROTEIN 17-OCT-13 4N8R TITLE CRYSTAL STRUCTURE OF RXRA LBD COMPLEXED WITH A SYNTHETIC MODULATOR K- TITLE 2 8008 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (UNP RESIDUES 223-462); COMPND 5 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1, RETINOID X COMPND 6 RECEPTOR ALPHA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RXRA, NR2B1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS RETINOID X RECEPTOR, ALPHA NUCLEAR RECEPTOR, NUCLEUS, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.E.ALESHIN,Y.SU,X.ZHANG,R.C.LIDDINGTON REVDAT 3 20-SEP-23 4N8R 1 REMARK SEQADV REVDAT 2 11-JUN-14 4N8R 1 JRNL REVDAT 1 14-MAY-14 4N8R 0 JRNL AUTH L.CHEN,Z.G.WANG,A.E.ALESHIN,F.CHEN,J.CHEN,F.JIANG, JRNL AUTH 2 G.ALITONGBIEKE,Z.ZENG,Y.MA,M.HUANG,H.ZHOU,G.CADWELL, JRNL AUTH 3 J.F.ZHENG,P.Q.HUANG,R.C.LIDDINGTON,X.K.ZHANG,Y.SU JRNL TITL SULINDAC-DERIVED RXR ALPHA MODULATORS INHIBIT CANCER CELL JRNL TITL 2 GROWTH BY BINDING TO A NOVEL SITE. JRNL REF CHEM.BIOL. V. 21 596 2014 JRNL REFN ISSN 1074-5521 JRNL PMID 24704507 JRNL DOI 10.1016/J.CHEMBIOL.2014.02.017 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 55829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.330 REMARK 3 FREE R VALUE TEST SET COUNT : 1859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.4693 - 6.0802 0.96 4088 139 0.1583 0.1851 REMARK 3 2 6.0802 - 4.8273 0.93 3960 130 0.1776 0.2000 REMARK 3 3 4.8273 - 4.2174 0.98 4127 148 0.1362 0.1868 REMARK 3 4 4.2174 - 3.8320 0.99 4181 136 0.1393 0.1489 REMARK 3 5 3.8320 - 3.5574 0.92 3925 141 0.1447 0.1995 REMARK 3 6 3.5574 - 3.3477 0.96 4029 146 0.1621 0.2178 REMARK 3 7 3.3477 - 3.1801 0.98 4110 137 0.1773 0.2492 REMARK 3 8 3.1801 - 3.0416 0.98 4217 147 0.1868 0.2562 REMARK 3 9 3.0416 - 2.9246 0.98 4111 146 0.1908 0.2439 REMARK 3 10 2.9246 - 2.8237 0.96 4081 136 0.1870 0.2627 REMARK 3 11 2.8237 - 2.7354 0.92 3904 140 0.1842 0.2390 REMARK 3 12 2.7354 - 2.6572 0.95 4009 141 0.2030 0.2816 REMARK 3 13 2.6572 - 2.5872 0.95 4054 142 0.2114 0.2989 REMARK 3 14 2.5872 - 2.5241 0.96 4067 142 0.2197 0.2746 REMARK 3 15 2.5241 - 2.4667 0.98 4135 138 0.2325 0.2731 REMARK 3 16 2.4667 - 2.4142 0.98 4081 142 0.2242 0.2507 REMARK 3 17 2.4142 - 2.3660 0.97 4131 145 0.2311 0.3118 REMARK 3 18 2.3660 - 2.3213 0.95 3991 135 0.2368 0.2857 REMARK 3 19 2.3213 - 2.2798 0.90 3868 135 0.2605 0.3282 REMARK 3 20 2.2798 - 2.2412 0.91 3878 121 0.2685 0.3270 REMARK 3 21 2.2412 - 2.2050 0.90 3814 125 0.2678 0.3033 REMARK 3 22 2.2050 - 2.1711 0.93 4003 141 0.2735 0.2904 REMARK 3 23 2.1711 - 2.1392 0.94 3925 142 0.2797 0.3679 REMARK 3 24 2.1392 - 2.1091 0.93 3923 138 0.2757 0.2894 REMARK 3 25 2.1091 - 2.0806 0.94 4005 134 0.2989 0.3364 REMARK 3 26 2.0806 - 2.0535 0.93 3908 131 0.3279 0.3487 REMARK 3 27 2.0535 - 2.0300 0.81 3414 121 0.3249 0.3465 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6479 REMARK 3 ANGLE : 1.048 8770 REMARK 3 CHIRALITY : 0.073 991 REMARK 3 PLANARITY : 0.005 1116 REMARK 3 DIHEDRAL : 12.787 2433 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000082894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58010 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 68.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.01400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1G1U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3330, 0.2M MG FORMATE, 100 MM REMARK 280 NACL, 20 MM TRIS-CL, 0.5 MM LIGAND K-8008, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.67350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 219 REMARK 465 SER A 220 REMARK 465 HIS A 221 REMARK 465 MET A 222 REMARK 465 THR A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 ALA A 226 REMARK 465 ASN A 227 REMARK 465 GLU A 228 REMARK 465 ASP A 229 REMARK 465 MET A 230 REMARK 465 PRO A 231 REMARK 465 VAL A 232 REMARK 465 GLU A 233 REMARK 465 ARG A 234 REMARK 465 ILE A 235 REMARK 465 LEU A 236 REMARK 465 GLU A 237 REMARK 465 ALA A 238 REMARK 465 GLU A 239 REMARK 465 LEU A 240 REMARK 465 ALA A 241 REMARK 465 VAL A 242 REMARK 465 GLU A 243 REMARK 465 PRO A 244 REMARK 465 LYS A 245 REMARK 465 THR A 246 REMARK 465 GLU A 247 REMARK 465 THR A 248 REMARK 465 TYR A 249 REMARK 465 VAL A 250 REMARK 465 GLU A 251 REMARK 465 ALA A 252 REMARK 465 ASN A 253 REMARK 465 MET A 254 REMARK 465 GLY A 255 REMARK 465 LEU A 256 REMARK 465 ASN A 257 REMARK 465 PRO A 258 REMARK 465 SER A 259 REMARK 465 SER A 260 REMARK 465 PRO A 261 REMARK 465 ASN A 262 REMARK 465 GLN A 460 REMARK 465 MET A 461 REMARK 465 THR A 462 REMARK 465 GLY B 219 REMARK 465 SER B 220 REMARK 465 HIS B 221 REMARK 465 MET B 222 REMARK 465 THR B 223 REMARK 465 SER B 224 REMARK 465 SER B 225 REMARK 465 ALA B 226 REMARK 465 ASN B 227 REMARK 465 GLU B 228 REMARK 465 ASP B 229 REMARK 465 MET B 230 REMARK 465 PRO B 231 REMARK 465 VAL B 232 REMARK 465 GLU B 233 REMARK 465 ARG B 234 REMARK 465 ILE B 235 REMARK 465 LEU B 236 REMARK 465 GLU B 237 REMARK 465 ALA B 238 REMARK 465 GLU B 239 REMARK 465 LEU B 240 REMARK 465 ALA B 241 REMARK 465 VAL B 242 REMARK 465 GLU B 243 REMARK 465 PRO B 244 REMARK 465 LYS B 245 REMARK 465 THR B 246 REMARK 465 GLU B 247 REMARK 465 THR B 248 REMARK 465 TYR B 249 REMARK 465 VAL B 250 REMARK 465 GLU B 251 REMARK 465 ALA B 252 REMARK 465 ASN B 253 REMARK 465 MET B 254 REMARK 465 GLY B 255 REMARK 465 LEU B 256 REMARK 465 ASN B 257 REMARK 465 PRO B 258 REMARK 465 SER B 259 REMARK 465 SER B 260 REMARK 465 HIS B 459 REMARK 465 GLN B 460 REMARK 465 MET B 461 REMARK 465 THR B 462 REMARK 465 GLY C 219 REMARK 465 SER C 220 REMARK 465 HIS C 221 REMARK 465 MET C 222 REMARK 465 THR C 223 REMARK 465 SER C 224 REMARK 465 SER C 225 REMARK 465 ALA C 226 REMARK 465 ASN C 227 REMARK 465 GLU C 228 REMARK 465 ASP C 229 REMARK 465 MET C 230 REMARK 465 PRO C 231 REMARK 465 VAL C 232 REMARK 465 GLU C 233 REMARK 465 ARG C 234 REMARK 465 ILE C 235 REMARK 465 LEU C 236 REMARK 465 GLU C 237 REMARK 465 ALA C 238 REMARK 465 GLU C 239 REMARK 465 LEU C 240 REMARK 465 ALA C 241 REMARK 465 VAL C 242 REMARK 465 GLU C 243 REMARK 465 PRO C 244 REMARK 465 LYS C 245 REMARK 465 THR C 246 REMARK 465 GLU C 247 REMARK 465 THR C 248 REMARK 465 TYR C 249 REMARK 465 VAL C 250 REMARK 465 GLU C 251 REMARK 465 ALA C 252 REMARK 465 ASN C 253 REMARK 465 MET C 254 REMARK 465 GLY C 255 REMARK 465 LEU C 256 REMARK 465 ASN C 257 REMARK 465 PRO C 258 REMARK 465 SER C 259 REMARK 465 SER C 260 REMARK 465 PRO C 261 REMARK 465 PRO C 458 REMARK 465 HIS C 459 REMARK 465 GLN C 460 REMARK 465 MET C 461 REMARK 465 THR C 462 REMARK 465 GLY D 219 REMARK 465 SER D 220 REMARK 465 HIS D 221 REMARK 465 MET D 222 REMARK 465 THR D 223 REMARK 465 SER D 224 REMARK 465 SER D 225 REMARK 465 ALA D 226 REMARK 465 ASN D 227 REMARK 465 GLU D 228 REMARK 465 ASP D 229 REMARK 465 MET D 230 REMARK 465 PRO D 231 REMARK 465 VAL D 232 REMARK 465 GLU D 233 REMARK 465 ARG D 234 REMARK 465 ILE D 235 REMARK 465 LEU D 236 REMARK 465 GLU D 237 REMARK 465 ALA D 238 REMARK 465 GLU D 239 REMARK 465 LEU D 240 REMARK 465 ALA D 241 REMARK 465 VAL D 242 REMARK 465 GLU D 243 REMARK 465 PRO D 244 REMARK 465 LYS D 245 REMARK 465 THR D 246 REMARK 465 GLU D 247 REMARK 465 THR D 248 REMARK 465 TYR D 249 REMARK 465 VAL D 250 REMARK 465 GLU D 251 REMARK 465 ALA D 252 REMARK 465 ASN D 253 REMARK 465 MET D 254 REMARK 465 GLY D 255 REMARK 465 LEU D 256 REMARK 465 ASN D 257 REMARK 465 PRO D 258 REMARK 465 SER D 259 REMARK 465 SER D 260 REMARK 465 PRO D 261 REMARK 465 ASN D 262 REMARK 465 GLN D 460 REMARK 465 MET D 461 REMARK 465 THR D 462 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 288 -7.92 74.80 REMARK 500 THR A 328 39.43 -89.61 REMARK 500 LEU A 353 -68.76 -109.39 REMARK 500 HIS B 288 -17.08 78.65 REMARK 500 HIS C 288 -9.64 86.19 REMARK 500 ASP C 322 18.07 59.57 REMARK 500 LEU C 353 -68.25 -120.79 REMARK 500 HIS D 288 -15.65 76.15 REMARK 500 THR D 328 34.24 -89.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K08 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K08 D 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N5G RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH A DIFFERENT MODULATOR DBREF 4N8R A 223 462 UNP P19793 RXRA_HUMAN 223 462 DBREF 4N8R B 223 462 UNP P19793 RXRA_HUMAN 223 462 DBREF 4N8R C 223 462 UNP P19793 RXRA_HUMAN 223 462 DBREF 4N8R D 223 462 UNP P19793 RXRA_HUMAN 223 462 SEQADV 4N8R GLY A 219 UNP P19793 EXPRESSION TAG SEQADV 4N8R SER A 220 UNP P19793 EXPRESSION TAG SEQADV 4N8R HIS A 221 UNP P19793 EXPRESSION TAG SEQADV 4N8R MET A 222 UNP P19793 EXPRESSION TAG SEQADV 4N8R GLY B 219 UNP P19793 EXPRESSION TAG SEQADV 4N8R SER B 220 UNP P19793 EXPRESSION TAG SEQADV 4N8R HIS B 221 UNP P19793 EXPRESSION TAG SEQADV 4N8R MET B 222 UNP P19793 EXPRESSION TAG SEQADV 4N8R GLY C 219 UNP P19793 EXPRESSION TAG SEQADV 4N8R SER C 220 UNP P19793 EXPRESSION TAG SEQADV 4N8R HIS C 221 UNP P19793 EXPRESSION TAG SEQADV 4N8R MET C 222 UNP P19793 EXPRESSION TAG SEQADV 4N8R GLY D 219 UNP P19793 EXPRESSION TAG SEQADV 4N8R SER D 220 UNP P19793 EXPRESSION TAG SEQADV 4N8R HIS D 221 UNP P19793 EXPRESSION TAG SEQADV 4N8R MET D 222 UNP P19793 EXPRESSION TAG SEQRES 1 A 244 GLY SER HIS MET THR SER SER ALA ASN GLU ASP MET PRO SEQRES 2 A 244 VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO SEQRES 3 A 244 LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN SEQRES 4 A 244 PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN SEQRES 5 A 244 ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA SEQRES 6 A 244 LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP SEQRES 7 A 244 GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU SEQRES 8 A 244 ILE ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP SEQRES 9 A 244 GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SEQRES 10 A 244 SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG SEQRES 11 A 244 VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN SEQRES 12 A 244 MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL SEQRES 13 A 244 LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA SEQRES 14 A 244 GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU SEQRES 15 A 244 GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY SEQRES 16 A 244 ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SEQRES 17 A 244 SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE SEQRES 18 A 244 LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET SEQRES 19 A 244 GLU MET LEU GLU ALA PRO HIS GLN MET THR SEQRES 1 B 244 GLY SER HIS MET THR SER SER ALA ASN GLU ASP MET PRO SEQRES 2 B 244 VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO SEQRES 3 B 244 LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN SEQRES 4 B 244 PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN SEQRES 5 B 244 ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA SEQRES 6 B 244 LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP SEQRES 7 B 244 GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU SEQRES 8 B 244 ILE ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP SEQRES 9 B 244 GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SEQRES 10 B 244 SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG SEQRES 11 B 244 VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN SEQRES 12 B 244 MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL SEQRES 13 B 244 LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA SEQRES 14 B 244 GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU SEQRES 15 B 244 GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY SEQRES 16 B 244 ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SEQRES 17 B 244 SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE SEQRES 18 B 244 LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET SEQRES 19 B 244 GLU MET LEU GLU ALA PRO HIS GLN MET THR SEQRES 1 C 244 GLY SER HIS MET THR SER SER ALA ASN GLU ASP MET PRO SEQRES 2 C 244 VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO SEQRES 3 C 244 LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN SEQRES 4 C 244 PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN SEQRES 5 C 244 ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA SEQRES 6 C 244 LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP SEQRES 7 C 244 GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU SEQRES 8 C 244 ILE ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP SEQRES 9 C 244 GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SEQRES 10 C 244 SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG SEQRES 11 C 244 VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN SEQRES 12 C 244 MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL SEQRES 13 C 244 LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA SEQRES 14 C 244 GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU SEQRES 15 C 244 GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY SEQRES 16 C 244 ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SEQRES 17 C 244 SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE SEQRES 18 C 244 LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET SEQRES 19 C 244 GLU MET LEU GLU ALA PRO HIS GLN MET THR SEQRES 1 D 244 GLY SER HIS MET THR SER SER ALA ASN GLU ASP MET PRO SEQRES 2 D 244 VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO SEQRES 3 D 244 LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN SEQRES 4 D 244 PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN SEQRES 5 D 244 ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA SEQRES 6 D 244 LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP SEQRES 7 D 244 GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU SEQRES 8 D 244 ILE ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP SEQRES 9 D 244 GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SEQRES 10 D 244 SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG SEQRES 11 D 244 VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN SEQRES 12 D 244 MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL SEQRES 13 D 244 LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA SEQRES 14 D 244 GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU SEQRES 15 D 244 GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY SEQRES 16 D 244 ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SEQRES 17 D 244 SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE SEQRES 18 D 244 LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET SEQRES 19 D 244 GLU MET LEU GLU ALA PRO HIS GLN MET THR HET K08 A 501 27 HET K08 D 501 27 HETNAM K08 5-(2-{(1Z)-2-METHYL-1-[4-(PROPAN-2-YL)BENZYLIDENE]-1H- HETNAM 2 K08 INDEN-3-YL}ETHYL)-1H-TETRAZOLE FORMUL 5 K08 2(C23 H24 N4) FORMUL 7 HOH *641(H2 O) HELIX 1 1 ASP A 263 ARG A 285 1 23 HELIX 2 2 HIS A 288 LEU A 292 5 5 HELIX 3 3 PRO A 293 SER A 317 1 25 HELIX 4 4 ILE A 318 VAL A 320 5 3 HELIX 5 5 ARG A 334 GLY A 341 1 8 HELIX 6 6 VAL A 342 LEU A 353 1 12 HELIX 7 7 LEU A 353 GLN A 361 1 9 HELIX 8 8 ASP A 363 PHE A 376 1 14 HELIX 9 9 ASN A 385 TYR A 408 1 24 HELIX 10 10 GLY A 413 LEU A 420 1 8 HELIX 11 11 ARG A 421 HIS A 435 1 15 HELIX 12 12 LEU A 436 GLY A 443 1 8 HELIX 13 13 GLY A 443 ALA A 457 1 15 HELIX 14 14 ASP B 263 ARG B 285 1 23 HELIX 15 15 HIS B 288 LEU B 292 5 5 HELIX 16 16 PRO B 293 SER B 317 1 25 HELIX 17 17 ILE B 318 VAL B 320 5 3 HELIX 18 18 ARG B 334 ALA B 340 1 7 HELIX 19 19 VAL B 342 LEU B 353 1 12 HELIX 20 20 LEU B 353 GLN B 361 1 9 HELIX 21 21 ASP B 363 PHE B 376 1 14 HELIX 22 22 ASN B 385 TYR B 408 1 24 HELIX 23 23 GLY B 413 LEU B 420 1 8 HELIX 24 24 ARG B 421 HIS B 435 1 15 HELIX 25 25 LEU B 436 ALA B 457 1 22 HELIX 26 26 ASP C 263 ARG C 285 1 23 HELIX 27 27 PRO C 293 SER C 317 1 25 HELIX 28 28 ILE C 318 VAL C 320 5 3 HELIX 29 29 ARG C 334 ALA C 340 1 7 HELIX 30 30 VAL C 342 LEU C 353 1 12 HELIX 31 31 LEU C 353 GLN C 361 1 9 HELIX 32 32 ASP C 363 PHE C 376 1 14 HELIX 33 33 ASN C 385 TYR C 408 1 24 HELIX 34 34 GLY C 413 LEU C 420 1 8 HELIX 35 35 ARG C 421 LEU C 436 1 16 HELIX 36 36 LEU C 436 ALA C 457 1 22 HELIX 37 37 PRO D 264 ARG D 285 1 22 HELIX 38 38 HIS D 288 LEU D 292 5 5 HELIX 39 39 PRO D 293 SER D 317 1 25 HELIX 40 40 ILE D 318 VAL D 320 5 3 HELIX 41 41 ARG D 334 ALA D 340 1 7 HELIX 42 42 VAL D 342 LEU D 353 1 12 HELIX 43 43 LEU D 353 MET D 360 1 8 HELIX 44 44 ASP D 363 PHE D 376 1 14 HELIX 45 45 ASN D 385 TYR D 408 1 24 HELIX 46 46 GLY D 413 LEU D 420 1 8 HELIX 47 47 ARG D 421 HIS D 435 1 15 HELIX 48 48 LEU D 436 GLY D 443 1 8 HELIX 49 49 GLY D 443 ALA D 457 1 15 SHEET 1 A 2 GLY A 323 LEU A 326 0 SHEET 2 A 2 LEU A 330 HIS A 333 -1 O VAL A 332 N ILE A 324 SHEET 1 B 2 GLY B 323 LEU B 325 0 SHEET 2 B 2 HIS B 331 HIS B 333 -1 O VAL B 332 N ILE B 324 SHEET 1 C 2 GLY C 323 LEU C 325 0 SHEET 2 C 2 HIS C 331 HIS C 333 -1 O VAL C 332 N ILE C 324 SHEET 1 D 2 GLY D 323 LEU D 326 0 SHEET 2 D 2 LEU D 330 HIS D 333 -1 O VAL D 332 N ILE D 324 SSBOND 1 CYS A 269 CYS C 269 1555 1555 2.04 SSBOND 2 CYS B 269 CYS D 269 1555 1555 2.04 SITE 1 AC1 8 ALA A 271 TRP A 305 CYS A 432 LEU A 436 SITE 2 AC1 8 PHE A 437 PHE A 438 PHE A 439 ILE A 442 SITE 1 AC2 9 ILE D 268 GLN D 275 TRP D 305 CYS D 432 SITE 2 AC2 9 LEU D 433 LEU D 436 PHE D 437 PHE D 438 SITE 3 AC2 9 PHE D 439 CRYST1 51.038 99.347 93.971 90.00 98.68 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019593 0.000000 0.002990 0.00000 SCALE2 0.000000 0.010066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010765 0.00000