HEADER TRANSFERASE/TRANSFERASE INHIBITOR 20-OCT-13 4N9D TITLE FRAGMENT-BASED DESIGN OF 3-AMINOPYRIDINE-DERIVED AMIDES AS POTENT TITLE 2 INHIBITORS OF HUMAN NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE (NAMPT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NAMPRTASE, NAMPT, PRE-B-CELL COLONY-ENHANCING FACTOR 1, PRE- COMPND 5 B CELL-ENHANCING FACTOR, VISFATIN; COMPND 6 EC: 2.4.2.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NAMPT, PBEF, PBEF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.S.DRAGOVICH,G.ZHAO,T.BAUMEISTER,B.BRAVO,A.M.GIANNETTI,Y.HO,R.HUA, AUTHOR 2 G.LI,X.LIANG,T.O'BRIEN,N.J.SKELTON,C.WANG,Q.ZHAO,A.OH,W.WANG,Y.WANG, AUTHOR 3 Y.XIAO,P.YUEN,M.ZAK,X.ZHENG REVDAT 2 28-FEB-24 4N9D 1 REMARK SEQADV REVDAT 1 19-FEB-14 4N9D 0 JRNL AUTH P.S.DRAGOVICH,G.ZHAO,T.BAUMEISTER,B.BRAVO,A.M.GIANNETTI, JRNL AUTH 2 Y.C.HO,R.HUA,G.LI,X.LIANG,X.MA,T.O'BRIEN,A.OH,N.J.SKELTON, JRNL AUTH 3 C.WANG,W.WANG,Y.WANG,Y.XIAO,P.W.YUEN,M.ZAK,Q.ZHAO,X.ZHENG JRNL TITL FRAGMENT-BASED DESIGN OF 3-AMINOPYRIDINE-DERIVED AMIDES AS JRNL TITL 2 POTENT INHIBITORS OF HUMAN NICOTINAMIDE JRNL TITL 3 PHOSPHORIBOSYLTRANSFERASE (NAMPT). JRNL REF BIOORG.MED.CHEM.LETT. V. 24 954 2014 JRNL REFN ISSN 0960-894X JRNL PMID 24433859 JRNL DOI 10.1016/J.BMCL.2013.12.062 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 109525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8467 - 5.2788 0.97 3636 181 0.1716 0.2091 REMARK 3 2 5.2788 - 4.1922 1.00 3624 197 0.1312 0.1343 REMARK 3 3 4.1922 - 3.6630 1.00 3666 183 0.1286 0.1384 REMARK 3 4 3.6630 - 3.3284 1.00 3653 182 0.1462 0.1765 REMARK 3 5 3.3284 - 3.0899 1.00 3620 190 0.1488 0.1929 REMARK 3 6 3.0899 - 2.9079 1.00 3658 170 0.1551 0.1669 REMARK 3 7 2.9079 - 2.7623 1.00 3584 215 0.1582 0.1809 REMARK 3 8 2.7623 - 2.6421 1.00 3651 174 0.1520 0.1609 REMARK 3 9 2.6421 - 2.5404 1.00 3608 183 0.1510 0.2040 REMARK 3 10 2.5404 - 2.4528 1.00 3619 209 0.1528 0.1976 REMARK 3 11 2.4528 - 2.3761 1.00 3637 184 0.1519 0.1928 REMARK 3 12 2.3761 - 2.3082 1.00 3579 192 0.1517 0.2025 REMARK 3 13 2.3082 - 2.2474 1.00 3638 173 0.1546 0.1924 REMARK 3 14 2.2474 - 2.1926 1.00 3642 186 0.1554 0.1831 REMARK 3 15 2.1926 - 2.1428 1.00 3569 202 0.1564 0.1747 REMARK 3 16 2.1428 - 2.0972 1.00 3624 193 0.1544 0.1946 REMARK 3 17 2.0972 - 2.0552 1.00 3626 178 0.1609 0.1857 REMARK 3 18 2.0552 - 2.0165 1.00 3596 191 0.1495 0.1753 REMARK 3 19 2.0165 - 1.9805 1.00 3608 184 0.1490 0.1887 REMARK 3 20 1.9805 - 1.9469 1.00 3600 182 0.1482 0.1895 REMARK 3 21 1.9469 - 1.9155 0.99 3624 187 0.1547 0.2153 REMARK 3 22 1.9155 - 1.8860 0.99 3576 193 0.1592 0.2132 REMARK 3 23 1.8860 - 1.8583 1.00 3563 228 0.1620 0.2005 REMARK 3 24 1.8583 - 1.8321 0.98 3465 192 0.1678 0.2365 REMARK 3 25 1.8321 - 1.8073 0.92 3350 207 0.1642 0.1998 REMARK 3 26 1.8073 - 1.7839 0.87 3127 164 0.1751 0.2220 REMARK 3 27 1.7839 - 1.7616 0.83 3006 151 0.1756 0.2496 REMARK 3 28 1.7616 - 1.7404 0.78 2800 132 0.1836 0.2423 REMARK 3 29 1.7404 - 1.7201 0.74 2652 151 0.1864 0.2208 REMARK 3 30 1.7201 - 1.7008 0.67 2439 131 0.1810 0.2106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 40.58 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.79280 REMARK 3 B22 (A**2) : -0.90720 REMARK 3 B33 (A**2) : -1.88570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.22080 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7823 REMARK 3 ANGLE : 1.084 10598 REMARK 3 CHIRALITY : 0.075 1149 REMARK 3 PLANARITY : 0.006 1346 REMARK 3 DIHEDRAL : 13.711 2882 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979220 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110046 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN FROM 0.2UL + 0.2UL REMARK 280 DROPS CONTAINING 6MG/ML NAMPT, 0.1M SODIUM PHOSPHATE, 25-29% REMARK 280 POLYETHYLENE GLYCOL 3350, 0.2M NACL, 1MM COMPOUND, PH 8.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.16850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 43 REMARK 465 THR A 44 REMARK 465 GLU A 45 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 LYS A 48 REMARK 465 LEU A 49 REMARK 465 ARG A 50 REMARK 465 LYS A 51 REMARK 465 VAL A 52 REMARK 465 GLU A 487 REMARK 465 ALA A 488 REMARK 465 ALA A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 LEU A 492 REMARK 465 GLU A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 43 REMARK 465 THR B 44 REMARK 465 GLU B 45 REMARK 465 ASN B 46 REMARK 465 SER B 47 REMARK 465 LYS B 48 REMARK 465 LEU B 49 REMARK 465 ARG B 50 REMARK 465 LYS B 51 REMARK 465 VAL B 52 REMARK 465 ALA B 488 REMARK 465 ALA B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 LEU B 492 REMARK 465 GLU B 493 REMARK 465 HIS B 494 REMARK 465 HIS B 495 REMARK 465 HIS B 496 REMARK 465 HIS B 497 REMARK 465 HIS B 498 REMARK 465 HIS B 499 REMARK 465 HIS B 500 REMARK 465 HIS B 501 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 135 O HOH A 920 1.98 REMARK 500 O HOH A 1008 O HOH A 1015 2.08 REMARK 500 O HOH A 1023 O HOH A 1153 2.10 REMARK 500 O HOH A 1000 O HOH B 1149 2.13 REMARK 500 O HOH B 1104 O HOH B 1121 2.14 REMARK 500 O HOH B 1186 O HOH B 1187 2.15 REMARK 500 OE2 GLU A 140 O HOH A 1220 2.15 REMARK 500 OD1 ASP A 235 O HOH A 975 2.15 REMARK 500 OG1 THR A 233 O HOH A 936 2.17 REMARK 500 O HOH B 774 O HOH B 934 2.17 REMARK 500 O LYS B 255 O HOH B 918 2.17 REMARK 500 O HOH A 1187 O HOH B 1001 2.18 REMARK 500 O HOH A 1076 O HOH A 1101 2.18 REMARK 500 O HOH A 973 O HOH A 1008 2.19 REMARK 500 O HOH A 1040 O HOH A 1189 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 231 -58.68 -127.34 REMARK 500 PHE A 269 62.17 -113.74 REMARK 500 GLU A 293 -67.64 -132.02 REMARK 500 ASP A 313 21.29 -150.50 REMARK 500 ASP A 416 72.99 -159.58 REMARK 500 ASP A 420 86.88 -150.01 REMARK 500 TYR B 231 -54.35 -128.26 REMARK 500 PHE B 269 59.64 -119.16 REMARK 500 GLU B 293 -68.48 -132.60 REMARK 500 ASP B 313 18.59 -149.93 REMARK 500 ASP B 416 72.71 -157.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2HJ A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2HJ B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N9B RELATED DB: PDB REMARK 900 RELATED ID: 4N9C RELATED DB: PDB DBREF 4N9D A 1 491 UNP P43490 NAMPT_HUMAN 1 491 DBREF 4N9D B 1 491 UNP P43490 NAMPT_HUMAN 1 491 SEQADV 4N9D LEU A 492 UNP P43490 EXPRESSION TAG SEQADV 4N9D GLU A 493 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS A 494 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS A 495 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS A 496 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS A 497 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS A 498 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS A 499 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS A 500 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS A 501 UNP P43490 EXPRESSION TAG SEQADV 4N9D LEU B 492 UNP P43490 EXPRESSION TAG SEQADV 4N9D GLU B 493 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS B 494 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS B 495 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS B 496 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS B 497 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS B 498 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS B 499 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS B 500 UNP P43490 EXPRESSION TAG SEQADV 4N9D HIS B 501 UNP P43490 EXPRESSION TAG SEQRES 1 A 501 MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU SEQRES 2 A 501 ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR SEQRES 3 A 501 PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS SEQRES 4 A 501 ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL SEQRES 5 A 501 LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE SEQRES 6 A 501 LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU SEQRES 7 A 501 LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE SEQRES 8 A 501 GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE SEQRES 9 A 501 LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS SEQRES 10 A 501 ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL SEQRES 11 A 501 LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP SEQRES 12 A 501 LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP SEQRES 13 A 501 TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS SEQRES 14 A 501 LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN SEQRES 15 A 501 LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR SEQRES 16 A 501 ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA SEQRES 17 A 501 SER ALA HIS LEU VAL ASN PHE LYS GLY THR ASP THR VAL SEQRES 18 A 501 ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS SEQRES 19 A 501 ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS SEQRES 20 A 501 SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP SEQRES 21 A 501 ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO SEQRES 22 A 501 VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA SEQRES 23 A 501 CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE SEQRES 24 A 501 VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO SEQRES 25 A 501 ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU SEQRES 26 A 501 GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER SEQRES 27 A 501 LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE SEQRES 28 A 501 GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE SEQRES 29 A 501 VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN SEQRES 30 A 501 ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU SEQRES 31 A 501 THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR SEQRES 32 A 501 VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP SEQRES 33 A 501 PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG SEQRES 34 A 501 LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR SEQRES 35 A 501 LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN SEQRES 36 A 501 ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR SEQRES 37 A 501 LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN SEQRES 38 A 501 LEU ASN ILE GLU LEU GLU ALA ALA HIS HIS LEU GLU HIS SEQRES 39 A 501 HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 501 MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU SEQRES 2 B 501 ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR SEQRES 3 B 501 PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS SEQRES 4 B 501 ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL SEQRES 5 B 501 LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE SEQRES 6 B 501 LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU SEQRES 7 B 501 LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE SEQRES 8 B 501 GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE SEQRES 9 B 501 LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS SEQRES 10 B 501 ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL SEQRES 11 B 501 LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP SEQRES 12 B 501 LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP SEQRES 13 B 501 TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS SEQRES 14 B 501 LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN SEQRES 15 B 501 LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR SEQRES 16 B 501 ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA SEQRES 17 B 501 SER ALA HIS LEU VAL ASN PHE LYS GLY THR ASP THR VAL SEQRES 18 B 501 ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS SEQRES 19 B 501 ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS SEQRES 20 B 501 SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP SEQRES 21 B 501 ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO SEQRES 22 B 501 VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA SEQRES 23 B 501 CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE SEQRES 24 B 501 VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO SEQRES 25 B 501 ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU SEQRES 26 B 501 GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER SEQRES 27 B 501 LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE SEQRES 28 B 501 GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE SEQRES 29 B 501 VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN SEQRES 30 B 501 ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU SEQRES 31 B 501 THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR SEQRES 32 B 501 VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP SEQRES 33 B 501 PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG SEQRES 34 B 501 LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR SEQRES 35 B 501 LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN SEQRES 36 B 501 ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR SEQRES 37 B 501 LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN SEQRES 38 B 501 LEU ASN ILE GLU LEU GLU ALA ALA HIS HIS LEU GLU HIS SEQRES 39 B 501 HIS HIS HIS HIS HIS HIS HIS HET 2HJ A 601 30 HET PO4 A 602 5 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET 2HJ B 601 30 HET PO4 B 602 5 HET EDO B 603 4 HETNAM 2HJ 4-({[(4-TERT-BUTYLPHENYL)SULFONYL]AMINO}METHYL)-N- HETNAM 2 2HJ (PYRIDIN-3-YL)BENZAMIDE HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 2HJ 2(C23 H25 N3 O3 S) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 EDO 6(C2 H6 O2) FORMUL 13 HOH *1037(H2 O) HELIX 1 1 ASN A 10 ALA A 14 5 5 HELIX 2 2 ASP A 16 GLN A 25 5 10 HELIX 3 3 GLY A 61 LEU A 70 1 10 HELIX 4 4 THR A 76 GLN A 92 1 17 HELIX 5 5 ASN A 97 ASP A 109 1 13 HELIX 6 6 ASP A 138 TYR A 142 5 5 HELIX 7 7 TRP A 143 ILE A 148 1 6 HELIX 8 8 ILE A 148 GLN A 154 1 7 HELIX 9 9 SER A 155 GLY A 181 1 27 HELIX 10 10 GLY A 185 TYR A 188 5 4 HELIX 11 11 GLY A 194 VAL A 198 5 5 HELIX 12 12 SER A 200 LEU A 212 1 13 HELIX 13 13 VAL A 221 TYR A 231 1 11 HELIX 14 14 GLU A 246 ALA A 252 1 7 HELIX 15 15 TRP A 253 ASP A 256 5 4 HELIX 16 16 HIS A 257 PHE A 269 1 13 HELIX 17 17 ASP A 282 LYS A 289 1 8 HELIX 18 18 LEU A 295 VAL A 300 1 6 HELIX 19 19 ASN A 316 PHE A 332 1 17 HELIX 20 20 ASP A 357 LYS A 371 1 15 HELIX 21 21 SER A 374 GLU A 376 5 3 HELIX 22 22 GLY A 383 GLN A 388 1 6 HELIX 23 23 ASP A 420 ARG A 424 5 5 HELIX 24 24 GLY A 446 GLU A 451 5 6 HELIX 25 25 SER A 472 ALA A 480 1 9 HELIX 26 26 ASN B 10 ALA B 14 5 5 HELIX 27 27 ASP B 16 GLN B 25 5 10 HELIX 28 28 GLY B 61 LEU B 70 1 10 HELIX 29 29 THR B 76 GLN B 92 1 17 HELIX 30 30 ASN B 97 ASP B 109 1 13 HELIX 31 31 ASP B 138 TYR B 142 5 5 HELIX 32 32 TRP B 143 ILE B 148 1 6 HELIX 33 33 ILE B 148 GLN B 154 1 7 HELIX 34 34 SER B 155 GLY B 181 1 27 HELIX 35 35 GLY B 185 TYR B 188 5 4 HELIX 36 36 GLY B 194 VAL B 198 5 5 HELIX 37 37 SER B 200 LEU B 212 1 13 HELIX 38 38 VAL B 221 TYR B 231 1 11 HELIX 39 39 GLU B 246 ALA B 252 1 7 HELIX 40 40 TRP B 253 ASP B 256 5 4 HELIX 41 41 HIS B 257 PHE B 269 1 13 HELIX 42 42 ASP B 282 LYS B 289 1 8 HELIX 43 43 LEU B 295 VAL B 300 1 6 HELIX 44 44 ASN B 316 PHE B 332 1 17 HELIX 45 45 ASP B 357 LYS B 371 1 15 HELIX 46 46 SER B 374 GLU B 376 5 3 HELIX 47 47 GLY B 383 GLN B 388 1 6 HELIX 48 48 ASP B 420 ARG B 424 5 5 HELIX 49 49 GLY B 446 GLU B 451 5 6 HELIX 50 50 SER B 472 ALA B 480 1 9 HELIX 51 51 LEU B 482 GLU B 487 1 6 SHEET 1 A 7 LEU A 409 ASN A 412 0 SHEET 2 A 7 CYS A 397 THR A 406 -1 N VAL A 404 O ILE A 411 SHEET 3 A 7 THR A 30 CYS A 39 -1 N TYR A 34 O TYR A 403 SHEET 4 A 7 VAL A 130 ASN A 136 -1 O VAL A 134 N SER A 35 SHEET 5 A 7 ILE A 114 ALA A 118 -1 N GLU A 115 O GLU A 135 SHEET 6 A 7 HIS A 459 LYS A 463 -1 O HIS A 459 N ALA A 118 SHEET 7 A 7 LYS A 466 VAL A 467 -1 O LYS A 466 N LYS A 463 SHEET 1 B 2 GLU A 56 VAL A 58 0 SHEET 2 B 2 VAL A 124 PRO A 126 -1 O ILE A 125 N THR A 57 SHEET 1 C 5 LEU A 190 ASP A 192 0 SHEET 2 C 5 ILE A 378 SER A 382 1 O PHE A 380 N HIS A 191 SHEET 3 C 5 LEU A 348 GLN A 352 1 N GLN A 352 O ALA A 379 SHEET 4 C 5 LEU A 308 ARG A 311 1 N ILE A 310 O ARG A 349 SHEET 5 C 5 VAL A 274 VAL A 277 1 N VAL A 274 O ILE A 309 SHEET 1 D 2 THR A 335 GLU A 336 0 SHEET 2 D 2 LYS A 342 LEU A 343 -1 O LEU A 343 N THR A 335 SHEET 1 E 2 SER A 431 ARG A 434 0 SHEET 2 E 2 PHE A 440 LEU A 443 -1 O VAL A 441 N HIS A 433 SHEET 1 F 7 LEU B 409 ASN B 412 0 SHEET 2 F 7 CYS B 397 THR B 406 -1 N VAL B 404 O ILE B 411 SHEET 3 F 7 THR B 30 CYS B 39 -1 N TYR B 36 O LYS B 400 SHEET 4 F 7 VAL B 130 ASN B 136 -1 O LEU B 131 N PHE B 37 SHEET 5 F 7 ILE B 114 ALA B 118 -1 N GLU B 115 O GLU B 135 SHEET 6 F 7 HIS B 459 LYS B 463 -1 O HIS B 459 N ALA B 118 SHEET 7 F 7 LYS B 466 VAL B 467 -1 O LYS B 466 N LYS B 463 SHEET 1 G 2 GLU B 56 VAL B 58 0 SHEET 2 G 2 VAL B 124 PRO B 126 -1 O ILE B 125 N THR B 57 SHEET 1 H 5 LEU B 190 ASP B 192 0 SHEET 2 H 5 ILE B 378 SER B 382 1 O PHE B 380 N HIS B 191 SHEET 3 H 5 LEU B 348 GLN B 352 1 N GLN B 352 O ALA B 379 SHEET 4 H 5 LEU B 308 ARG B 311 1 N ILE B 310 O ARG B 349 SHEET 5 H 5 VAL B 274 VAL B 277 1 N VAL B 274 O ILE B 309 SHEET 1 I 2 THR B 335 GLU B 336 0 SHEET 2 I 2 LYS B 342 LEU B 343 -1 O LEU B 343 N THR B 335 SHEET 1 J 2 SER B 431 ARG B 434 0 SHEET 2 J 2 PHE B 440 LEU B 443 -1 O VAL B 441 N HIS B 433 SITE 1 AC1 17 TYR A 188 HIS A 191 PHE A 193 ARG A 196 SITE 2 AC1 17 ASP A 219 SER A 241 VAL A 242 ALA A 244 SITE 3 AC1 17 SER A 275 ILE A 309 ARG A 311 HOH A 722 SITE 4 AC1 17 HOH A 777 HOH A 933 HOH A 981 ASP B 16 SITE 5 AC1 17 TYR B 18 SITE 1 AC2 9 ARG A 40 ARG A 392 SER A 398 LYS A 400 SITE 2 AC2 9 HOH A 731 HOH A 927 HOH A 985 HOH A 986 SITE 3 AC2 9 HOH A1001 SITE 1 AC3 7 LYS A 400 CYS A 401 PHE A 414 HIS B 247 SITE 2 AC3 7 SER B 248 THR B 251 HOH B 835 SITE 1 AC4 4 GLU A 187 ASN A 214 ARG A 477 HOH A1162 SITE 1 AC5 6 PHE A 123 VAL A 124 ARG A 434 ASN A 479 SITE 2 AC5 6 HOH A 857 HOH A1119 SITE 1 AC6 7 HIS A 247 SER A 248 THR A 251 HOH A 821 SITE 2 AC6 7 LYS B 400 CYS B 401 PHE B 414 SITE 1 AC7 7 GLU A 246 HIS A 247 ARG A 311 HOH A 821 SITE 2 AC7 7 HOH A 922 TYR B 18 HOH B 923 SITE 1 AC8 17 ASP A 16 TYR A 18 TYR B 188 HIS B 191 SITE 2 AC8 17 PHE B 193 ARG B 196 ASP B 219 SER B 241 SITE 3 AC8 17 VAL B 242 ALA B 244 SER B 275 ILE B 309 SITE 4 AC8 17 ARG B 311 HOH B 795 HOH B 834 HOH B 937 SITE 5 AC8 17 HOH B1001 SITE 1 AC9 10 ARG B 392 SER B 398 LYS B 400 HOH B 724 SITE 2 AC9 10 HOH B 801 HOH B 923 HOH B 995 HOH B 996 SITE 3 AC9 10 HOH B1212 HOH B1213 SITE 1 BC1 7 TYR A 18 LYS A 400 GLU B 246 HIS B 247 SITE 2 BC1 7 ARG B 311 HOH B 835 HOH B 926 CRYST1 60.413 106.337 83.205 90.00 96.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016553 0.000000 0.001907 0.00000 SCALE2 0.000000 0.009404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012098 0.00000