HEADER TRANSCRIPTION REGULATOR 21-OCT-13 4N9H TITLE CRYSTAL STRUCTURE OF TRANSCRIPTION REGULATION PROTEIN CRP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATABOLITE GENE ACTIVATOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYCLIC AMP RECEPTOR PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CRP, BN17_32921, ECS4208, LF82_0356; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A(+) KEYWDS DNA BINDING, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR B.J.LEE,S.H.SEOK,H.IM,H.J.YOON REVDAT 1 09-JUL-14 4N9H 0 JRNL AUTH S.H.SEOK,H.IM,H.S.WON,M.D.SEO,Y.S.LEE,H.J.YOON,M.J.CHA, JRNL AUTH 2 J.Y.PARK,B.J.LEE JRNL TITL STRUCTURES OF INACTIVE CRP SPECIES REVEAL THE ATOMIC DETAILS JRNL TITL 2 OF THE ALLOSTERIC TRANSITION THAT DISCRIMINATES CYCLIC JRNL TITL 3 NUCLEOTIDE SECOND MESSENGERS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1726 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24914983 JRNL DOI 10.1107/S139900471400724X REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1300 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1747 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3156 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.94000 REMARK 3 B22 (A**2) : -3.94000 REMARK 3 B33 (A**2) : 7.88000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.052 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.652 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3206 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4318 ; 2.432 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ; 6.847 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;34.722 ;24.348 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 574 ;19.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.593 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2330 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4N9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-13. REMARK 100 THE RCSB ID CODE IS RCSB082920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25544 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 22.500 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, PH 6.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.11633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.23267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.17450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.29083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 10.05817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 0 REMARK 465 VAL A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 ASP A 8 REMARK 465 MSE B 0 REMARK 465 VAL B 1 REMARK 465 LEU B 2 REMARK 465 GLY B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 GLN B 6 REMARK 465 THR B 7 REMARK 465 ASP B 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 170 CG CD OE1 NE2 REMARK 470 THR A 208 OG1 CG2 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 170 CG CD OE1 NE2 REMARK 470 THR B 208 OG1 CG2 REMARK 470 ARG B 209 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 58 N MSE B 59 1.65 REMARK 500 O GLU B 58 CA MSE B 59 1.74 REMARK 500 CA GLU B 58 N MSE B 59 1.77 REMARK 500 OE2 GLU B 96 O HOH B 307 2.05 REMARK 500 O HOH A 343 O HOH A 348 2.09 REMARK 500 O HOH A 326 O HOH A 353 2.15 REMARK 500 O HOH B 327 O HOH B 330 2.17 REMARK 500 N HIS B 31 OE2 GLU B 34 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 17 CG HIS A 17 CD2 0.059 REMARK 500 HIS A 19 CG HIS A 19 CD2 0.055 REMARK 500 HIS A 21 CG HIS A 21 CD2 0.057 REMARK 500 HIS A 31 CG HIS A 31 CD2 0.070 REMARK 500 CYS A 92 CB CYS A 92 SG -0.097 REMARK 500 MSE B 59 N MSE B 59 CA 0.122 REMARK 500 ASN B 149 CG ASN B 149 OD1 0.132 REMARK 500 GLY B 162 C GLY B 162 O 0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 29 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 GLU B 58 CA - C - O ANGL. DEV. = 29.8 DEGREES REMARK 500 MSE B 120 CG - SE - CE ANGL. DEV. = -16.0 DEGREES REMARK 500 LEU B 124 CB - CG - CD1 ANGL. DEV. = 12.3 DEGREES REMARK 500 LEU B 148 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 MSE B 163 CB - CA - C ANGL. DEV. = -14.5 DEGREES REMARK 500 MSE B 189 CG - SE - CE ANGL. DEV. = -19.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 26 -3.41 76.97 REMARK 500 GLU A 77 -168.73 -103.91 REMARK 500 ASN A 109 86.55 -162.15 REMARK 500 LYS B 26 -6.32 74.58 REMARK 500 ASP B 53 -158.08 -73.11 REMARK 500 GLU B 55 -14.68 86.68 REMARK 500 GLN B 80 -174.35 -63.39 REMARK 500 ASP B 155 -9.19 -56.96 REMARK 500 THR B 208 46.23 35.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 162 15.96 REMARK 500 MSE B 163 34.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 140 17.8 L L OUTSIDE RANGE REMARK 500 MSE B 59 22.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N9I RELATED DB: PDB DBREF 4N9H A 0 209 UNP C3SQJ7 C3SQJ7_ECOLX 1 210 DBREF 4N9H B 0 209 UNP C3SQJ7 C3SQJ7_ECOLX 1 210 SEQRES 1 A 210 MSE VAL LEU GLY LYS PRO GLN THR ASP PRO THR LEU GLU SEQRES 2 A 210 TRP PHE LEU SER HIS CYS HIS ILE HIS LYS TYR PRO SER SEQRES 3 A 210 LYS SER THR LEU ILE HIS GLN GLY GLU LYS ALA GLU THR SEQRES 4 A 210 LEU TYR TYR ILE VAL LYS GLY SER VAL ALA VAL LEU ILE SEQRES 5 A 210 LYS ASP GLU GLU GLY LYS GLU MSE ILE LEU SER TYR LEU SEQRES 6 A 210 ASN GLN GLY ASP PHE ILE GLY GLU LEU GLY LEU PHE GLU SEQRES 7 A 210 GLU GLY GLN GLU ARG SER ALA TRP VAL ARG ALA LYS THR SEQRES 8 A 210 ALA CYS GLU VAL ALA GLU ILE SER TYR LYS LYS PHE ARG SEQRES 9 A 210 GLN LEU ILE GLN VAL ASN PRO ASP ILE LEU MSE ARG LEU SEQRES 10 A 210 SER ALA GLN MSE ALA ARG ARG LEU GLN VAL THR SER GLU SEQRES 11 A 210 LYS VAL GLY ASN LEU ALA PHE LEU ASP VAL THR GLY ARG SEQRES 12 A 210 ILE ALA GLN THR LEU LEU ASN LEU ALA LYS GLN PRO ASP SEQRES 13 A 210 ALA MSE THR HIS PRO ASP GLY MSE GLN ILE LYS ILE THR SEQRES 14 A 210 ARG GLN GLU ILE GLY GLN ILE VAL GLY CYS SER ARG GLU SEQRES 15 A 210 THR VAL GLY ARG ILE LEU LYS MSE LEU GLU ASP GLN ASN SEQRES 16 A 210 LEU ILE SER ALA HIS GLY LYS THR ILE VAL VAL TYR GLY SEQRES 17 A 210 THR ARG SEQRES 1 B 210 MSE VAL LEU GLY LYS PRO GLN THR ASP PRO THR LEU GLU SEQRES 2 B 210 TRP PHE LEU SER HIS CYS HIS ILE HIS LYS TYR PRO SER SEQRES 3 B 210 LYS SER THR LEU ILE HIS GLN GLY GLU LYS ALA GLU THR SEQRES 4 B 210 LEU TYR TYR ILE VAL LYS GLY SER VAL ALA VAL LEU ILE SEQRES 5 B 210 LYS ASP GLU GLU GLY LYS GLU MSE ILE LEU SER TYR LEU SEQRES 6 B 210 ASN GLN GLY ASP PHE ILE GLY GLU LEU GLY LEU PHE GLU SEQRES 7 B 210 GLU GLY GLN GLU ARG SER ALA TRP VAL ARG ALA LYS THR SEQRES 8 B 210 ALA CYS GLU VAL ALA GLU ILE SER TYR LYS LYS PHE ARG SEQRES 9 B 210 GLN LEU ILE GLN VAL ASN PRO ASP ILE LEU MSE ARG LEU SEQRES 10 B 210 SER ALA GLN MSE ALA ARG ARG LEU GLN VAL THR SER GLU SEQRES 11 B 210 LYS VAL GLY ASN LEU ALA PHE LEU ASP VAL THR GLY ARG SEQRES 12 B 210 ILE ALA GLN THR LEU LEU ASN LEU ALA LYS GLN PRO ASP SEQRES 13 B 210 ALA MSE THR HIS PRO ASP GLY MSE GLN ILE LYS ILE THR SEQRES 14 B 210 ARG GLN GLU ILE GLY GLN ILE VAL GLY CYS SER ARG GLU SEQRES 15 B 210 THR VAL GLY ARG ILE LEU LYS MSE LEU GLU ASP GLN ASN SEQRES 16 B 210 LEU ILE SER ALA HIS GLY LYS THR ILE VAL VAL TYR GLY SEQRES 17 B 210 THR ARG MODRES 4N9H MSE A 59 MET SELENOMETHIONINE MODRES 4N9H MSE A 114 MET SELENOMETHIONINE MODRES 4N9H MSE A 120 MET SELENOMETHIONINE MODRES 4N9H MSE A 157 MET SELENOMETHIONINE MODRES 4N9H MSE A 163 MET SELENOMETHIONINE MODRES 4N9H MSE A 189 MET SELENOMETHIONINE MODRES 4N9H MSE B 59 MET SELENOMETHIONINE MODRES 4N9H MSE B 114 MET SELENOMETHIONINE MODRES 4N9H MSE B 120 MET SELENOMETHIONINE MODRES 4N9H MSE B 157 MET SELENOMETHIONINE MODRES 4N9H MSE B 163 MET SELENOMETHIONINE MODRES 4N9H MSE B 189 MET SELENOMETHIONINE HET MSE A 59 8 HET MSE A 114 8 HET MSE A 120 8 HET MSE A 157 8 HET MSE A 163 8 HET MSE A 189 8 HET MSE B 59 8 HET MSE B 114 8 HET MSE B 120 8 HET MSE B 157 8 HET MSE B 163 8 HET MSE B 189 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *113(H2 O) HELIX 1 1 PRO A 9 HIS A 17 1 9 HELIX 2 2 GLY A 71 GLU A 77 5 7 HELIX 3 3 TYR A 99 ASN A 109 1 11 HELIX 4 4 PRO A 110 VAL A 126 1 17 HELIX 5 5 ASN A 133 LYS A 152 1 20 HELIX 6 6 THR A 168 GLY A 177 1 10 HELIX 7 7 SER A 179 GLN A 193 1 15 HELIX 8 8 THR B 10 SER B 16 1 7 HELIX 9 9 GLY B 71 PHE B 76 5 6 HELIX 10 10 TYR B 99 ASN B 109 1 11 HELIX 11 11 PRO B 110 LYS B 130 1 21 HELIX 12 12 ASN B 133 LYS B 152 1 20 HELIX 13 13 THR B 168 GLY B 177 1 10 HELIX 14 14 SER B 179 GLN B 193 1 15 SHEET 1 A 4 HIS A 19 TYR A 23 0 SHEET 2 A 4 CYS A 92 SER A 98 -1 O GLU A 96 N HIS A 19 SHEET 3 A 4 THR A 38 LYS A 44 -1 N LEU A 39 O ILE A 97 SHEET 4 A 4 PHE A 69 ILE A 70 -1 O ILE A 70 N TYR A 40 SHEET 1 B 4 THR A 28 ILE A 30 0 SHEET 2 B 4 TRP A 85 ALA A 88 -1 O VAL A 86 N LEU A 29 SHEET 3 B 4 SER A 46 LYS A 52 -1 N ALA A 48 O ARG A 87 SHEET 4 B 4 GLU A 58 ASN A 65 -1 O MSE A 59 N ILE A 51 SHEET 1 C 4 MSE A 157 HIS A 159 0 SHEET 2 C 4 GLY A 162 LYS A 166 -1 O GLN A 164 N MSE A 157 SHEET 3 C 4 THR A 202 TYR A 206 -1 O VAL A 205 N MSE A 163 SHEET 4 C 4 ILE A 196 HIS A 199 -1 N SER A 197 O VAL A 204 SHEET 1 D 4 HIS B 19 TYR B 23 0 SHEET 2 D 4 CYS B 92 SER B 98 -1 O CYS B 92 N TYR B 23 SHEET 3 D 4 THR B 38 LYS B 44 -1 N LEU B 39 O ILE B 97 SHEET 4 D 4 PHE B 69 ILE B 70 -1 O ILE B 70 N TYR B 40 SHEET 1 E 4 THR B 28 ILE B 30 0 SHEET 2 E 4 TRP B 85 ALA B 88 -1 O VAL B 86 N ILE B 30 SHEET 3 E 4 SER B 46 LEU B 50 -1 N LEU B 50 O TRP B 85 SHEET 4 E 4 ILE B 60 ASN B 65 -1 O LEU B 61 N VAL B 49 SHEET 1 F 4 MSE B 157 THR B 158 0 SHEET 2 F 4 GLY B 162 LYS B 166 -1 O GLN B 164 N MSE B 157 SHEET 3 F 4 THR B 202 TYR B 206 -1 O ILE B 203 N ILE B 165 SHEET 4 F 4 ILE B 196 HIS B 199 -1 N HIS B 199 O THR B 202 LINK C GLU A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N ILE A 60 1555 1555 1.32 LINK C LEU A 113 N MSE A 114 1555 1555 1.31 LINK C MSE A 114 N ARG A 115 1555 1555 1.33 LINK C GLN A 119 N MSE A 120 1555 1555 1.32 LINK C MSE A 120 N ALA A 121 1555 1555 1.33 LINK C ALA A 156 N MSE A 157 1555 1555 1.33 LINK C MSE A 157 N THR A 158 1555 1555 1.33 LINK C GLY A 162 N MSE A 163 1555 1555 1.33 LINK C MSE A 163 N GLN A 164 1555 1555 1.32 LINK C LYS A 188 N MSE A 189 1555 1555 1.32 LINK C MSE A 189 N LEU A 190 1555 1555 1.32 LINK C GLU B 58 N MSE B 59 1555 1555 1.37 LINK C MSE B 59 N ILE B 60 1555 1555 1.33 LINK C LEU B 113 N MSE B 114 1555 1555 1.33 LINK C MSE B 114 N ARG B 115 1555 1555 1.35 LINK C GLN B 119 N MSE B 120 1555 1555 1.33 LINK C MSE B 120 N ALA B 121 1555 1555 1.34 LINK C ALA B 156 N MSE B 157 1555 1555 1.32 LINK C MSE B 157 N THR B 158 1555 1555 1.33 LINK C GLY B 162 N MSE B 163 1555 1555 1.41 LINK C MSE B 163 N GLN B 164 1555 1555 1.40 LINK C LYS B 188 N MSE B 189 1555 1555 1.34 LINK C MSE B 189 N LEU B 190 1555 1555 1.32 CRYST1 120.617 120.617 60.349 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008291 0.004787 0.000000 0.00000 SCALE2 0.000000 0.009573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016570 0.00000