HEADER TRANSCRIPTION REGULATOR 21-OCT-13 4N9I TITLE CRYSTAL STRUCTURE OF TRANSCRIPTION REGULATION PROTEIN CRP COMPLEXED TITLE 2 WITH CGMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATABOLITE GENE ACTIVATOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CYCLIC AMP RECEPTOR PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CRP, BN17_32921, ECS4208, LF82_0356; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A(+) KEYWDS DNA BINDING, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR B.-J.LEE,S.-H.SEOK,H.IM,H.-J.YOON REVDAT 2 08-NOV-23 4N9I 1 REMARK REVDAT 1 09-JUL-14 4N9I 0 JRNL AUTH S.H.SEOK,H.IM,H.S.WON,M.D.SEO,Y.S.LEE,H.J.YOON,M.J.CHA, JRNL AUTH 2 J.Y.PARK,B.J.LEE JRNL TITL STRUCTURES OF INACTIVE CRP SPECIES REVEAL THE ATOMIC DETAILS JRNL TITL 2 OF THE ALLOSTERIC TRANSITION THAT DISCRIMINATES CYCLIC JRNL TITL 3 NUCLEOTIDE SECOND MESSENGERS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1726 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24914983 JRNL DOI 10.1107/S139900471400724X REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 42771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2221 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2697 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.1750 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.09000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : -4.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.008 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6596 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8908 ; 2.116 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 804 ; 7.006 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 288 ;34.641 ;24.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1248 ;17.817 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;23.106 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1020 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4792 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3996 ; 1.782 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6448 ; 2.995 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2600 ; 4.137 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2460 ; 6.284 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.549 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H,-K,-L REMARK 3 TWIN FRACTION : 0.451 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4N9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000082921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45063 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.14700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3HIF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, PH 7.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.08550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 LEU B 2 REMARK 465 GLY B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 GLN B 6 REMARK 465 THR B 7 REMARK 465 MET C 0 REMARK 465 VAL C 1 REMARK 465 LEU C 2 REMARK 465 GLY C 3 REMARK 465 LYS C 4 REMARK 465 PRO C 5 REMARK 465 GLN C 6 REMARK 465 THR C 7 REMARK 465 MET D 0 REMARK 465 VAL D 1 REMARK 465 LEU D 2 REMARK 465 GLY D 3 REMARK 465 LYS D 4 REMARK 465 PRO D 5 REMARK 465 GLN D 6 REMARK 465 THR D 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LYS D 201 O HOH D 452 2.07 REMARK 500 OE1 GLN D 119 O HOH D 406 2.07 REMARK 500 O HOH B 449 O HOH B 456 2.08 REMARK 500 OH TYR D 206 O HOH D 442 2.10 REMARK 500 O HOH C 452 O HOH C 460 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 139 CB VAL A 139 CG1 -0.132 REMARK 500 VAL A 204 CB VAL A 204 CG2 0.144 REMARK 500 GLU B 171 CD GLU B 171 OE1 -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 VAL D 131 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 PRO D 154 C - N - CD ANGL. DEV. = -13.7 DEGREES REMARK 500 ASP D 192 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 37 12.61 -142.92 REMARK 500 ALA B 198 58.97 -142.39 REMARK 500 GLN C 80 174.41 -53.31 REMARK 500 ASN C 109 84.78 -150.53 REMARK 500 LYS D 26 -5.87 87.27 REMARK 500 ASP D 53 -179.09 -69.98 REMARK 500 GLU D 55 10.82 -63.34 REMARK 500 ASN D 109 81.62 -151.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 77 GLU C 78 119.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCG C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCG D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N9H RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT CYCLIC NUCLEOTIDE DBREF 4N9I A 0 209 UNP C3SQJ7 C3SQJ7_ECOLX 1 210 DBREF 4N9I B 0 209 UNP C3SQJ7 C3SQJ7_ECOLX 1 210 DBREF 4N9I C 0 209 UNP C3SQJ7 C3SQJ7_ECOLX 1 210 DBREF 4N9I D 0 209 UNP C3SQJ7 C3SQJ7_ECOLX 1 210 SEQRES 1 A 210 MET VAL LEU GLY LYS PRO GLN THR ASP PRO THR LEU GLU SEQRES 2 A 210 TRP PHE LEU SER HIS CYS HIS ILE HIS LYS TYR PRO SER SEQRES 3 A 210 LYS SER THR LEU ILE HIS GLN GLY GLU LYS ALA GLU THR SEQRES 4 A 210 LEU TYR TYR ILE VAL LYS GLY SER VAL ALA VAL LEU ILE SEQRES 5 A 210 LYS ASP GLU GLU GLY LYS GLU MET ILE LEU SER TYR LEU SEQRES 6 A 210 ASN GLN GLY ASP PHE ILE GLY GLU LEU GLY LEU PHE GLU SEQRES 7 A 210 GLU GLY GLN GLU ARG SER ALA TRP VAL ARG ALA LYS THR SEQRES 8 A 210 ALA CYS GLU VAL ALA GLU ILE SER TYR LYS LYS PHE ARG SEQRES 9 A 210 GLN LEU ILE GLN VAL ASN PRO ASP ILE LEU MET ARG LEU SEQRES 10 A 210 SER ALA GLN MET ALA ARG ARG LEU GLN VAL THR SER GLU SEQRES 11 A 210 LYS VAL GLY ASN LEU ALA PHE LEU ASP VAL THR GLY ARG SEQRES 12 A 210 ILE ALA GLN THR LEU LEU ASN LEU ALA LYS GLN PRO ASP SEQRES 13 A 210 ALA MET THR HIS PRO ASP GLY MET GLN ILE LYS ILE THR SEQRES 14 A 210 ARG GLN GLU ILE GLY GLN ILE VAL GLY CYS SER ARG GLU SEQRES 15 A 210 THR VAL GLY ARG ILE LEU LYS MET LEU GLU ASP GLN ASN SEQRES 16 A 210 LEU ILE SER ALA HIS GLY LYS THR ILE VAL VAL TYR GLY SEQRES 17 A 210 THR ARG SEQRES 1 B 210 MET VAL LEU GLY LYS PRO GLN THR ASP PRO THR LEU GLU SEQRES 2 B 210 TRP PHE LEU SER HIS CYS HIS ILE HIS LYS TYR PRO SER SEQRES 3 B 210 LYS SER THR LEU ILE HIS GLN GLY GLU LYS ALA GLU THR SEQRES 4 B 210 LEU TYR TYR ILE VAL LYS GLY SER VAL ALA VAL LEU ILE SEQRES 5 B 210 LYS ASP GLU GLU GLY LYS GLU MET ILE LEU SER TYR LEU SEQRES 6 B 210 ASN GLN GLY ASP PHE ILE GLY GLU LEU GLY LEU PHE GLU SEQRES 7 B 210 GLU GLY GLN GLU ARG SER ALA TRP VAL ARG ALA LYS THR SEQRES 8 B 210 ALA CYS GLU VAL ALA GLU ILE SER TYR LYS LYS PHE ARG SEQRES 9 B 210 GLN LEU ILE GLN VAL ASN PRO ASP ILE LEU MET ARG LEU SEQRES 10 B 210 SER ALA GLN MET ALA ARG ARG LEU GLN VAL THR SER GLU SEQRES 11 B 210 LYS VAL GLY ASN LEU ALA PHE LEU ASP VAL THR GLY ARG SEQRES 12 B 210 ILE ALA GLN THR LEU LEU ASN LEU ALA LYS GLN PRO ASP SEQRES 13 B 210 ALA MET THR HIS PRO ASP GLY MET GLN ILE LYS ILE THR SEQRES 14 B 210 ARG GLN GLU ILE GLY GLN ILE VAL GLY CYS SER ARG GLU SEQRES 15 B 210 THR VAL GLY ARG ILE LEU LYS MET LEU GLU ASP GLN ASN SEQRES 16 B 210 LEU ILE SER ALA HIS GLY LYS THR ILE VAL VAL TYR GLY SEQRES 17 B 210 THR ARG SEQRES 1 C 210 MET VAL LEU GLY LYS PRO GLN THR ASP PRO THR LEU GLU SEQRES 2 C 210 TRP PHE LEU SER HIS CYS HIS ILE HIS LYS TYR PRO SER SEQRES 3 C 210 LYS SER THR LEU ILE HIS GLN GLY GLU LYS ALA GLU THR SEQRES 4 C 210 LEU TYR TYR ILE VAL LYS GLY SER VAL ALA VAL LEU ILE SEQRES 5 C 210 LYS ASP GLU GLU GLY LYS GLU MET ILE LEU SER TYR LEU SEQRES 6 C 210 ASN GLN GLY ASP PHE ILE GLY GLU LEU GLY LEU PHE GLU SEQRES 7 C 210 GLU GLY GLN GLU ARG SER ALA TRP VAL ARG ALA LYS THR SEQRES 8 C 210 ALA CYS GLU VAL ALA GLU ILE SER TYR LYS LYS PHE ARG SEQRES 9 C 210 GLN LEU ILE GLN VAL ASN PRO ASP ILE LEU MET ARG LEU SEQRES 10 C 210 SER ALA GLN MET ALA ARG ARG LEU GLN VAL THR SER GLU SEQRES 11 C 210 LYS VAL GLY ASN LEU ALA PHE LEU ASP VAL THR GLY ARG SEQRES 12 C 210 ILE ALA GLN THR LEU LEU ASN LEU ALA LYS GLN PRO ASP SEQRES 13 C 210 ALA MET THR HIS PRO ASP GLY MET GLN ILE LYS ILE THR SEQRES 14 C 210 ARG GLN GLU ILE GLY GLN ILE VAL GLY CYS SER ARG GLU SEQRES 15 C 210 THR VAL GLY ARG ILE LEU LYS MET LEU GLU ASP GLN ASN SEQRES 16 C 210 LEU ILE SER ALA HIS GLY LYS THR ILE VAL VAL TYR GLY SEQRES 17 C 210 THR ARG SEQRES 1 D 210 MET VAL LEU GLY LYS PRO GLN THR ASP PRO THR LEU GLU SEQRES 2 D 210 TRP PHE LEU SER HIS CYS HIS ILE HIS LYS TYR PRO SER SEQRES 3 D 210 LYS SER THR LEU ILE HIS GLN GLY GLU LYS ALA GLU THR SEQRES 4 D 210 LEU TYR TYR ILE VAL LYS GLY SER VAL ALA VAL LEU ILE SEQRES 5 D 210 LYS ASP GLU GLU GLY LYS GLU MET ILE LEU SER TYR LEU SEQRES 6 D 210 ASN GLN GLY ASP PHE ILE GLY GLU LEU GLY LEU PHE GLU SEQRES 7 D 210 GLU GLY GLN GLU ARG SER ALA TRP VAL ARG ALA LYS THR SEQRES 8 D 210 ALA CYS GLU VAL ALA GLU ILE SER TYR LYS LYS PHE ARG SEQRES 9 D 210 GLN LEU ILE GLN VAL ASN PRO ASP ILE LEU MET ARG LEU SEQRES 10 D 210 SER ALA GLN MET ALA ARG ARG LEU GLN VAL THR SER GLU SEQRES 11 D 210 LYS VAL GLY ASN LEU ALA PHE LEU ASP VAL THR GLY ARG SEQRES 12 D 210 ILE ALA GLN THR LEU LEU ASN LEU ALA LYS GLN PRO ASP SEQRES 13 D 210 ALA MET THR HIS PRO ASP GLY MET GLN ILE LYS ILE THR SEQRES 14 D 210 ARG GLN GLU ILE GLY GLN ILE VAL GLY CYS SER ARG GLU SEQRES 15 D 210 THR VAL GLY ARG ILE LEU LYS MET LEU GLU ASP GLN ASN SEQRES 16 D 210 LEU ILE SER ALA HIS GLY LYS THR ILE VAL VAL TYR GLY SEQRES 17 D 210 THR ARG HET PCG A 301 23 HET PCG B 301 23 HET PCG C 301 23 HET PCG D 301 23 HETNAM PCG CYCLIC GUANOSINE MONOPHOSPHATE FORMUL 5 PCG 4(C10 H12 N5 O7 P) FORMUL 9 HOH *268(H2 O) HELIX 1 1 ASP A 8 HIS A 17 1 10 HELIX 2 2 GLY A 71 PHE A 76 5 6 HELIX 3 3 TYR A 99 ASN A 109 1 11 HELIX 4 4 ASN A 109 GLU A 129 1 21 HELIX 5 5 ASN A 133 LYS A 152 1 20 HELIX 6 6 THR A 168 GLY A 177 1 10 HELIX 7 7 SER A 179 GLN A 193 1 15 HELIX 8 8 PRO B 9 SER B 16 1 8 HELIX 9 9 GLU B 72 GLU B 77 5 6 HELIX 10 10 TYR B 99 ASN B 109 1 11 HELIX 11 11 ASN B 109 THR B 127 1 19 HELIX 12 12 ASN B 133 LYS B 152 1 20 HELIX 13 13 THR B 168 GLY B 177 1 10 HELIX 14 14 SER B 179 GLN B 193 1 15 HELIX 15 15 PRO C 9 SER C 16 1 8 HELIX 16 16 GLY C 71 PHE C 76 5 6 HELIX 17 17 TYR C 99 ASN C 109 1 11 HELIX 18 18 ASN C 109 GLU C 129 1 21 HELIX 19 19 ASN C 133 ALA C 151 1 19 HELIX 20 20 THR C 168 GLY C 177 1 10 HELIX 21 21 SER C 179 GLN C 193 1 15 HELIX 22 22 PRO D 9 SER D 16 1 8 HELIX 23 23 GLY D 71 PHE D 76 5 6 HELIX 24 24 TYR D 99 ASN D 109 1 11 HELIX 25 25 ASN D 109 THR D 127 1 19 HELIX 26 26 ASN D 133 GLN D 153 1 21 HELIX 27 27 THR D 168 GLY D 177 1 10 HELIX 28 28 SER D 179 GLN D 193 1 15 SHEET 1 A 4 HIS A 19 TYR A 23 0 SHEET 2 A 4 CYS A 92 SER A 98 -1 O CYS A 92 N TYR A 23 SHEET 3 A 4 THR A 38 LYS A 44 -1 N TYR A 41 O ALA A 95 SHEET 4 A 4 PHE A 69 ILE A 70 -1 O ILE A 70 N TYR A 40 SHEET 1 B 4 THR A 28 ILE A 30 0 SHEET 2 B 4 TRP A 85 ALA A 88 -1 O VAL A 86 N LEU A 29 SHEET 3 B 4 SER A 46 LYS A 52 -1 N ALA A 48 O ARG A 87 SHEET 4 B 4 GLU A 58 ASN A 65 -1 O SER A 62 N VAL A 49 SHEET 1 C 4 MET A 157 HIS A 159 0 SHEET 2 C 4 GLY A 162 LYS A 166 -1 O GLN A 164 N MET A 157 SHEET 3 C 4 THR A 202 TYR A 206 -1 O VAL A 205 N MET A 163 SHEET 4 C 4 ILE A 196 HIS A 199 -1 N HIS A 199 O THR A 202 SHEET 1 D 4 HIS B 19 TYR B 23 0 SHEET 2 D 4 CYS B 92 SER B 98 -1 O CYS B 92 N TYR B 23 SHEET 3 D 4 THR B 38 LYS B 44 -1 N LYS B 44 O GLU B 93 SHEET 4 D 4 PHE B 69 ILE B 70 -1 O ILE B 70 N TYR B 40 SHEET 1 E 4 THR B 28 ILE B 30 0 SHEET 2 E 4 TRP B 85 ALA B 88 -1 O VAL B 86 N ILE B 30 SHEET 3 E 4 VAL B 47 LYS B 52 -1 N ALA B 48 O ARG B 87 SHEET 4 E 4 GLU B 58 LEU B 64 -1 O SER B 62 N VAL B 49 SHEET 1 F 4 MET B 157 HIS B 159 0 SHEET 2 F 4 GLY B 162 LYS B 166 -1 O GLN B 164 N MET B 157 SHEET 3 F 4 THR B 202 TYR B 206 -1 O ILE B 203 N ILE B 165 SHEET 4 F 4 ILE B 196 SER B 197 -1 N SER B 197 O VAL B 204 SHEET 1 G 4 HIS C 19 TYR C 23 0 SHEET 2 G 4 CYS C 92 SER C 98 -1 O VAL C 94 N HIS C 21 SHEET 3 G 4 THR C 38 LYS C 44 -1 N LYS C 44 O GLU C 93 SHEET 4 G 4 PHE C 69 ILE C 70 -1 O ILE C 70 N TYR C 40 SHEET 1 H 4 THR C 28 ILE C 30 0 SHEET 2 H 4 TRP C 85 ALA C 88 -1 O VAL C 86 N LEU C 29 SHEET 3 H 4 SER C 46 LYS C 52 -1 N ALA C 48 O ARG C 87 SHEET 4 H 4 GLU C 58 ASN C 65 -1 O SER C 62 N VAL C 49 SHEET 1 I 4 MET C 157 HIS C 159 0 SHEET 2 I 4 GLY C 162 LYS C 166 -1 O GLN C 164 N MET C 157 SHEET 3 I 4 THR C 202 TYR C 206 -1 O VAL C 205 N MET C 163 SHEET 4 I 4 ILE C 196 HIS C 199 -1 N SER C 197 O VAL C 204 SHEET 1 J 4 HIS D 19 TYR D 23 0 SHEET 2 J 4 CYS D 92 SER D 98 -1 O CYS D 92 N TYR D 23 SHEET 3 J 4 THR D 38 LYS D 44 -1 N LEU D 39 O ILE D 97 SHEET 4 J 4 PHE D 69 ILE D 70 -1 O ILE D 70 N TYR D 40 SHEET 1 K 4 THR D 28 ILE D 30 0 SHEET 2 K 4 TRP D 85 ALA D 88 -1 O VAL D 86 N ILE D 30 SHEET 3 K 4 SER D 46 LYS D 52 -1 N ALA D 48 O ARG D 87 SHEET 4 K 4 GLU D 58 ASN D 65 -1 O SER D 62 N VAL D 49 SHEET 1 L 4 MET D 157 HIS D 159 0 SHEET 2 L 4 GLY D 162 LYS D 166 -1 O GLN D 164 N MET D 157 SHEET 3 L 4 THR D 202 TYR D 206 -1 O VAL D 205 N MET D 163 SHEET 4 L 4 ILE D 196 SER D 197 -1 N SER D 197 O VAL D 204 SITE 1 AC1 13 VAL A 49 SER A 62 GLY A 71 GLU A 72 SITE 2 AC1 13 ARG A 82 SER A 83 HOH A 405 HOH A 416 SITE 3 AC1 13 HOH A 468 HOH A 472 GLN B 125 LYS B 130 SITE 4 AC1 13 HOH B 402 SITE 1 AC2 9 VAL B 49 LEU B 61 GLY B 71 GLU B 72 SITE 2 AC2 9 ARG B 82 SER B 83 ARG B 123 HOH B 433 SITE 3 AC2 9 HOH B 444 SITE 1 AC3 12 VAL C 49 LEU C 61 SER C 62 GLY C 71 SITE 2 AC3 12 GLU C 72 ARG C 82 SER C 83 HOH C 410 SITE 3 AC3 12 HOH C 421 GLN D 125 LYS D 130 HOH D 401 SITE 1 AC4 10 VAL D 49 LEU D 61 SER D 62 GLY D 71 SITE 2 AC4 10 GLU D 72 ARG D 82 SER D 83 ARG D 123 SITE 3 AC4 10 HOH D 428 HOH D 438 CRYST1 42.568 56.171 186.718 90.00 90.18 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023492 0.000000 0.000074 0.00000 SCALE2 0.000000 0.017803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005356 0.00000