data_4NAK # _entry.id 4NAK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NAK pdb_00004nak 10.2210/pdb4nak/pdb RCSB RCSB082959 ? ? WWPDB D_1000082959 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1W77 ;The crystal structure of a plant 2C-methyl-D-erythritol 4-phosphate cytidylyltransferase exhibits a distinct quaternary structure compared to bacterial homologues and a possible role in feedback regulation for cytidine monophosphate. ; unspecified PDB 2YC5 'Inhibitors of the herbicidal target IspD: allosteric site binding.' unspecified PDB 1INI 'Structure of 4-diphosphocytidyl-2-C- methylerythritol synthetase involved in mevalonate- independent isoprenoid biosynthesis.' unspecified PDB 4NAI 'Arabidopsis thaliana IspD apo' unspecified PDB 4NAL . unspecified PDB 4NAN . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NAK _pdbx_database_status.recvd_initial_deposition_date 2013-10-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kunfermann, A.' 1 'Witschel, M.' 2 'Illarionov, B.' 3 'Martin, R.' 4 'Rottmann, M.' 5 'Hoffken, H.W.' 6 'Seet, M.' 7 'Eisenreich, W.' 8 'Knolker, H.-J.' 9 'Fischer, M.' 10 'Bacher, A.' 11 'Groll, M.' 12 'Diederich, F.' 13 # _citation.id primary _citation.title 'Pseudilins: Halogenated, Allosteric Inhibitors of the Non-Mevalonate Pathway Enzyme IspD.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 53 _citation.page_first 2235 _citation.page_last 2239 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24446431 _citation.pdbx_database_id_DOI 10.1002/anie.201309557 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kunfermann, A.' 1 ? primary 'Witschel, M.' 2 ? primary 'Illarionov, B.' 3 ? primary 'Martin, R.' 4 ? primary 'Rottmann, M.' 5 ? primary 'Hoffken, H.W.' 6 ? primary 'Seet, M.' 7 ? primary 'Eisenreich, W.' 8 ? primary 'Knolker, H.J.' 9 ? primary 'Fischer, M.' 10 ? primary 'Bacher, A.' 11 ? primary 'Groll, M.' 12 ? primary 'Diederich, F.' 13 ? # _cell.entry_id 4NAK _cell.length_a 75.240 _cell.length_b 75.240 _cell.length_c 224.140 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NAK _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic' 25430.193 1 2.7.7.60 R149S ? ? 2 non-polymer syn PENTABROMOPSEUDILIN 553.665 1 ? ? ? ? 3 non-polymer syn 2,3-DIHYDROXY-1,4-DITHIOBUTANE 154.251 1 ? ? ? ? 4 non-polymer syn 'CADMIUM ION' 112.411 5 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 6 ? ? ? ? 6 water nat water 18.015 69 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '4-diphosphocytidyl-2C-methyl-D-erythritol synthase, MEP cytidylyltransferase, AtMECT, AtMEPCT' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MEKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPG KERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEM QTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSEDS ; _entity_poly.pdbx_seq_one_letter_code_can ;MEKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPG KERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEM QTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSEDS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 LYS n 1 4 SER n 1 5 VAL n 1 6 SER n 1 7 VAL n 1 8 ILE n 1 9 LEU n 1 10 LEU n 1 11 ALA n 1 12 GLY n 1 13 GLY n 1 14 GLN n 1 15 GLY n 1 16 LYS n 1 17 ARG n 1 18 MET n 1 19 LYS n 1 20 MET n 1 21 SER n 1 22 MET n 1 23 PRO n 1 24 LYS n 1 25 GLN n 1 26 TYR n 1 27 ILE n 1 28 PRO n 1 29 LEU n 1 30 LEU n 1 31 GLY n 1 32 GLN n 1 33 PRO n 1 34 ILE n 1 35 ALA n 1 36 LEU n 1 37 TYR n 1 38 SER n 1 39 PHE n 1 40 PHE n 1 41 THR n 1 42 PHE n 1 43 SER n 1 44 ARG n 1 45 MET n 1 46 PRO n 1 47 GLU n 1 48 VAL n 1 49 LYS n 1 50 GLU n 1 51 ILE n 1 52 VAL n 1 53 VAL n 1 54 VAL n 1 55 CYS n 1 56 ASP n 1 57 PRO n 1 58 PHE n 1 59 PHE n 1 60 ARG n 1 61 ASP n 1 62 ILE n 1 63 PHE n 1 64 GLU n 1 65 GLU n 1 66 TYR n 1 67 GLU n 1 68 GLU n 1 69 SER n 1 70 ILE n 1 71 ASP n 1 72 VAL n 1 73 ASP n 1 74 LEU n 1 75 SER n 1 76 PHE n 1 77 ALA n 1 78 ILE n 1 79 PRO n 1 80 GLY n 1 81 LYS n 1 82 GLU n 1 83 ARG n 1 84 GLN n 1 85 ASP n 1 86 SER n 1 87 VAL n 1 88 TYR n 1 89 SER n 1 90 GLY n 1 91 LEU n 1 92 GLN n 1 93 GLU n 1 94 ILE n 1 95 ASP n 1 96 VAL n 1 97 ASN n 1 98 SER n 1 99 GLU n 1 100 LEU n 1 101 VAL n 1 102 CYS n 1 103 ILE n 1 104 HIS n 1 105 ASP n 1 106 SER n 1 107 ALA n 1 108 ARG n 1 109 PRO n 1 110 LEU n 1 111 VAL n 1 112 ASN n 1 113 THR n 1 114 GLU n 1 115 ASP n 1 116 VAL n 1 117 GLU n 1 118 LYS n 1 119 VAL n 1 120 LEU n 1 121 LYS n 1 122 ASP n 1 123 GLY n 1 124 SER n 1 125 ALA n 1 126 VAL n 1 127 GLY n 1 128 ALA n 1 129 ALA n 1 130 VAL n 1 131 LEU n 1 132 GLY n 1 133 VAL n 1 134 PRO n 1 135 ALA n 1 136 LYS n 1 137 ALA n 1 138 THR n 1 139 ILE n 1 140 LYS n 1 141 GLU n 1 142 VAL n 1 143 ASN n 1 144 SER n 1 145 ASP n 1 146 SER n 1 147 LEU n 1 148 VAL n 1 149 VAL n 1 150 LYS n 1 151 THR n 1 152 LEU n 1 153 ASP n 1 154 ARG n 1 155 LYS n 1 156 THR n 1 157 LEU n 1 158 TRP n 1 159 GLU n 1 160 MET n 1 161 GLN n 1 162 THR n 1 163 PRO n 1 164 GLN n 1 165 VAL n 1 166 ILE n 1 167 LYS n 1 168 PRO n 1 169 GLU n 1 170 LEU n 1 171 LEU n 1 172 LYS n 1 173 LYS n 1 174 GLY n 1 175 PHE n 1 176 GLU n 1 177 LEU n 1 178 VAL n 1 179 LYS n 1 180 SER n 1 181 GLU n 1 182 GLY n 1 183 LEU n 1 184 GLU n 1 185 VAL n 1 186 THR n 1 187 ASP n 1 188 ASP n 1 189 VAL n 1 190 SER n 1 191 ILE n 1 192 VAL n 1 193 GLU n 1 194 TYR n 1 195 LEU n 1 196 LYS n 1 197 HIS n 1 198 PRO n 1 199 VAL n 1 200 TYR n 1 201 VAL n 1 202 SER n 1 203 GLN n 1 204 GLY n 1 205 SER n 1 206 TYR n 1 207 THR n 1 208 ASN n 1 209 ILE n 1 210 LYS n 1 211 VAL n 1 212 THR n 1 213 THR n 1 214 PRO n 1 215 ASP n 1 216 ASP n 1 217 LEU n 1 218 LEU n 1 219 LEU n 1 220 ALA n 1 221 GLU n 1 222 ARG n 1 223 ILE n 1 224 LEU n 1 225 SER n 1 226 GLU n 1 227 ASP n 1 228 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'mouse-ear cress, thale-cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'At2g02500, ISPD, MCT, MECT, MEPCT, T8K22.20' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 1007065 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain M15 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNCO113 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ISPD_ARATH _struct_ref.pdbx_db_accession P69834 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGK ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQ TPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSEDS ; _struct_ref.pdbx_align_begin 76 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NAK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 228 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P69834 _struct_ref_seq.db_align_beg 76 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 302 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 76 _struct_ref_seq.pdbx_auth_seq_align_end 302 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4NAK MET A 1 ? UNP P69834 ? ? 'initiating methionine' 75 1 1 4NAK SER A 75 ? UNP P69834 ARG 149 'engineered mutation' 149 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DTT non-polymer . 2,3-DIHYDROXY-1,4-DITHIOBUTANE 1,4-DITHIOTHREITOL 'C4 H10 O2 S2' 154.251 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PBQ non-polymer . PENTABROMOPSEUDILIN ? 'C10 H4 Br5 N O' 553.665 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4NAK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_percent_sol 48.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '50 mM HEPES, 50 mM CdSO4, 800 mM KAc, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-02-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'LN2 cooled fixed-exit. Si(111) monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 4NAK _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.8 _reflns.number_obs 22147 _reflns.number_all ? _reflns.percent_possible_obs 95.8 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.9 _reflns_shell.percent_possible_all 97.3 _reflns_shell.Rmerge_I_obs 0.536 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4NAK _refine.ls_number_reflns_obs 21039 _refine.ls_number_reflns_all 22147 _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 95.77 _refine.ls_R_factor_obs 0.19194 _refine.ls_R_factor_all 0.194 _refine.ls_R_factor_R_work 0.19059 _refine.ls_R_factor_R_free 0.21821 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1108 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.955 _refine.B_iso_mean 45.488 _refine.aniso_B[1][1] 0.42 _refine.aniso_B[2][2] 0.42 _refine.aniso_B[3][3] -1.35 _refine.aniso_B[1][2] 0.42 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model 'PDB ENTRY 4NAI' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.201 _refine.pdbx_overall_ESU_R_Free 0.116 _refine.overall_SU_ML 0.079 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.670 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1631 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 1736 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.005 0.019 ? 1684 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.050 2.009 ? 2286 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 4.849 5.000 ? 206 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 30.404 25.882 ? 68 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13.119 15.000 ? 298 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8.245 15.000 ? 5 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.064 0.200 ? 272 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.004 0.021 ? 1226 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2.443 3.000 ? 1684 ? 'X-RAY DIFFRACTION' r_sphericity_free 22.600 5.000 ? 31 ? 'X-RAY DIFFRACTION' r_sphericity_bonded 9.371 5.000 ? 1706 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.845 _refine_ls_shell.number_reflns_R_work 1494 _refine_ls_shell.R_factor_R_work 0.195 _refine_ls_shell.percent_reflns_obs 96.86 _refine_ls_shell.R_factor_R_free 0.245 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 79 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4NAK _struct.title 'Arabidopsis thaliana IspD in complex with pentabromo-pseudilin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NAK _struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE INHIBITOR' _struct_keywords.text ;herbicide, anti-infectives, pseudilin, natural product, drug discovery, allosteric inhibition, Rossmann Fold, Transferase, TRANSFERASE-TRANSFERASE INHIBITOR complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 5 ? O N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 35 ? ARG A 44 ? ALA A 109 ARG A 118 1 ? 10 HELX_P HELX_P2 2 ASP A 56 ? PHE A 58 ? ASP A 130 PHE A 132 5 ? 3 HELX_P HELX_P3 3 PHE A 59 ? GLU A 65 ? PHE A 133 GLU A 139 1 ? 7 HELX_P HELX_P4 4 GLU A 82 ? GLN A 92 ? GLU A 156 GLN A 166 1 ? 11 HELX_P HELX_P5 5 ASN A 112 ? GLY A 127 ? ASN A 186 GLY A 201 1 ? 16 HELX_P HELX_P6 6 LYS A 167 ? GLY A 182 ? LYS A 241 GLY A 256 1 ? 16 HELX_P HELX_P7 7 SER A 190 ? LEU A 195 ? SER A 264 LEU A 269 1 ? 6 HELX_P HELX_P8 8 THR A 213 ? LEU A 224 ? THR A 287 LEU A 298 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ILE 34 O ? ? ? 1_555 L K . K ? ? A ILE 108 A K 411 1_555 ? ? ? ? ? ? ? 2.774 ? ? metalc2 metalc ? ? A ALA 35 O ? ? ? 1_555 L K . K ? ? A ALA 109 A K 411 1_555 ? ? ? ? ? ? ? 3.493 ? ? metalc3 metalc ? ? A SER 38 OG ? ? ? 1_555 L K . K ? ? A SER 112 A K 411 1_555 ? ? ? ? ? ? ? 2.628 ? ? metalc4 metalc ? ? A SER 43 O ? ? ? 1_555 M K . K ? ? A SER 117 A K 412 1_555 ? ? ? ? ? ? ? 3.093 ? ? metalc5 metalc ? ? A MET 45 O ? ? ? 1_555 M K . K ? ? A MET 119 A K 412 1_555 ? ? ? ? ? ? ? 2.794 ? ? metalc6 metalc ? ? A VAL 48 O ? ? ? 1_555 M K . K ? ? A VAL 122 A K 412 1_555 ? ? ? ? ? ? ? 3.350 ? ? metalc7 metalc ? ? A GLU 64 OE2 ? ? ? 1_555 G CD . CD ? ? A GLU 138 A CD 406 1_555 ? ? ? ? ? ? ? 2.029 ? ? metalc8 metalc ? ? A GLU 67 OE1 ? ? ? 1_555 G CD . CD ? ? A GLU 141 A CD 406 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc9 metalc ? ? A ASP 71 O ? ? ? 1_555 M K . K ? ? A ASP 145 A K 412 1_555 ? ? ? ? ? ? ? 3.429 ? ? metalc10 metalc ? ? A GLU 93 OE1 ? ? ? 1_555 E CD . CD ? ? A GLU 167 A CD 404 1_555 ? ? ? ? ? ? ? 2.409 ? ? metalc11 metalc ? ? A GLU 93 OE2 ? ? ? 1_555 E CD . CD ? ? A GLU 167 A CD 404 1_555 ? ? ? ? ? ? ? 2.524 ? ? metalc12 metalc ? ? A SER 106 O ? ? ? 1_555 L K . K ? ? A SER 180 A K 411 1_555 ? ? ? ? ? ? ? 2.724 ? ? metalc13 metalc ? ? A ASP 115 OD2 ? ? ? 1_555 N K . K ? ? A ASP 189 A K 413 1_555 ? ? ? ? ? ? ? 2.603 ? ? metalc14 metalc ? ? A GLN 164 OE1 ? ? ? 1_555 D CD . CD ? ? A GLN 238 A CD 403 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc15 metalc ? ? A ASP 187 OD1 ? ? ? 1_555 F CD . CD ? ? A ASP 261 A CD 405 1_555 ? ? ? ? ? ? ? 2.449 ? ? metalc16 metalc ? ? A HIS 197 ND1 ? ? ? 1_555 H CD . CD ? ? A HIS 271 A CD 407 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc17 metalc ? ? A ASN 208 OD1 ? ? ? 1_555 K K . K ? ? A ASN 282 A K 410 1_555 ? ? ? ? ? ? ? 2.837 ? ? metalc18 metalc ? ? A ILE 209 O ? ? ? 1_555 K K . K ? ? A ILE 283 A K 410 1_555 ? ? ? ? ? ? ? 2.760 ? ? metalc19 metalc ? ? A ASP 216 OD2 ? ? ? 1_555 I K . K ? ? A ASP 290 A K 408 1_555 ? ? ? ? ? ? ? 2.734 ? ? metalc20 metalc ? ? A ASP 216 OD1 ? ? ? 1_555 I K . K ? ? A ASP 290 A K 408 1_555 ? ? ? ? ? ? ? 3.296 ? ? metalc21 metalc ? ? B PBQ . N11 ? ? ? 1_555 D CD . CD ? ? A PBQ 401 A CD 403 1_555 ? ? ? ? ? ? ? 2.228 ? ? metalc22 metalc ? ? B PBQ . O ? ? ? 1_555 D CD . CD ? ? A PBQ 401 A CD 403 1_555 ? ? ? ? ? ? ? 2.421 ? ? metalc23 metalc ? ? F CD . CD ? ? ? 1_555 O HOH . O ? ? A CD 405 A HOH 517 1_555 ? ? ? ? ? ? ? 2.340 ? ? metalc24 metalc ? ? F CD . CD ? ? ? 1_555 O HOH . O ? ? A CD 405 A HOH 560 1_555 ? ? ? ? ? ? ? 2.494 ? ? metalc25 metalc ? ? H CD . CD ? ? ? 1_555 O HOH . O ? ? A CD 407 A HOH 507 1_555 ? ? ? ? ? ? ? 2.543 ? ? metalc26 metalc ? ? J K . K ? ? ? 1_555 O HOH . O ? ? A K 409 A HOH 538 1_555 ? ? ? ? ? ? ? 3.239 ? ? metalc27 metalc ? ? N K . K ? ? ? 1_555 O HOH . O ? ? A K 413 A HOH 505 1_555 ? ? ? ? ? ? ? 2.713 ? ? metalc28 metalc ? ? N K . K ? ? ? 1_555 O HOH . O ? ? A K 413 A HOH 508 1_555 ? ? ? ? ? ? ? 2.696 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 162 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 236 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 163 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 237 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 5.09 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 73 ? ALA A 77 ? ASP A 147 ALA A 151 A 2 VAL A 48 ? VAL A 54 ? VAL A 122 VAL A 128 A 3 VAL A 5 ? LEU A 10 ? VAL A 79 LEU A 84 A 4 LEU A 100 ? ASP A 105 ? LEU A 174 ASP A 179 A 5 TRP A 158 ? ILE A 166 ? TRP A 232 ILE A 240 A 6 ALA A 128 ? PRO A 134 ? ALA A 202 PRO A 208 A 7 TYR A 200 ? GLN A 203 ? TYR A 274 GLN A 277 B 1 PRO A 28 ? LEU A 29 ? PRO A 102 LEU A 103 B 2 GLN A 32 ? PRO A 33 ? GLN A 106 PRO A 107 C 1 GLU A 141 ? VAL A 142 ? GLU A 215 VAL A 216 C 2 VAL A 148 ? VAL A 149 ? VAL A 222 VAL A 223 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 73 ? O ASP A 147 N ILE A 51 ? N ILE A 125 A 2 3 O VAL A 52 ? O VAL A 126 N VAL A 7 ? N VAL A 81 A 3 4 N LEU A 10 ? N LEU A 84 O HIS A 104 ? O HIS A 178 A 4 5 N VAL A 101 ? N VAL A 175 O ILE A 166 ? O ILE A 240 A 5 6 O VAL A 165 ? O VAL A 239 N ALA A 129 ? N ALA A 203 A 6 7 N ALA A 128 ? N ALA A 202 O TYR A 200 ? O TYR A 274 B 1 2 N LEU A 29 ? N LEU A 103 O GLN A 32 ? O GLN A 106 C 1 2 N GLU A 141 ? N GLU A 215 O VAL A 149 ? O VAL A 223 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PBQ 401 ? 8 'BINDING SITE FOR RESIDUE PBQ A 401' AC2 Software A DTT 402 ? 8 'BINDING SITE FOR RESIDUE DTT A 402' AC3 Software A CD 403 ? 2 'BINDING SITE FOR RESIDUE CD A 403' AC4 Software A CD 404 ? 2 'BINDING SITE FOR RESIDUE CD A 404' AC5 Software A CD 405 ? 4 'BINDING SITE FOR RESIDUE CD A 405' AC6 Software A CD 406 ? 3 'BINDING SITE FOR RESIDUE CD A 406' AC7 Software A CD 407 ? 5 'BINDING SITE FOR RESIDUE CD A 407' AC8 Software A K 408 ? 1 'BINDING SITE FOR RESIDUE K A 408' AC9 Software A K 409 ? 3 'BINDING SITE FOR RESIDUE K A 409' BC1 Software A K 410 ? 5 'BINDING SITE FOR RESIDUE K A 410' BC2 Software A K 411 ? 5 'BINDING SITE FOR RESIDUE K A 411' BC3 Software A K 412 ? 5 'BINDING SITE FOR RESIDUE K A 412' BC4 Software A K 413 ? 4 'BINDING SITE FOR RESIDUE K A 413' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ALA A 129 ? ALA A 203 . ? 1_555 ? 2 AC1 8 GLN A 164 ? GLN A 238 . ? 1_555 ? 3 AC1 8 VAL A 165 ? VAL A 239 . ? 1_555 ? 4 AC1 8 LEU A 171 ? LEU A 245 . ? 1_555 ? 5 AC1 8 SER A 190 ? SER A 264 . ? 1_555 ? 6 AC1 8 ILE A 191 ? ILE A 265 . ? 1_555 ? 7 AC1 8 VAL A 192 ? VAL A 266 . ? 1_555 ? 8 AC1 8 CD D . ? CD A 403 . ? 1_555 ? 9 AC2 8 LYS A 121 ? LYS A 195 . ? 1_555 ? 10 AC2 8 ASP A 122 ? ASP A 196 . ? 2_665 ? 11 AC2 8 ALA A 125 ? ALA A 199 . ? 2_665 ? 12 AC2 8 VAL A 126 ? VAL A 200 . ? 2_665 ? 13 AC2 8 TYR A 200 ? TYR A 274 . ? 2_665 ? 14 AC2 8 K J . ? K A 409 . ? 3_565 ? 15 AC2 8 K J . ? K A 409 . ? 2_665 ? 16 AC2 8 K J . ? K A 409 . ? 1_555 ? 17 AC3 2 GLN A 164 ? GLN A 238 . ? 1_555 ? 18 AC3 2 PBQ B . ? PBQ A 401 . ? 1_555 ? 19 AC4 2 GLU A 93 ? GLU A 167 . ? 1_555 ? 20 AC4 2 GLU A 93 ? GLU A 167 . ? 4_555 ? 21 AC5 4 ASP A 187 ? ASP A 261 . ? 1_555 ? 22 AC5 4 HOH O . ? HOH A 517 . ? 1_555 ? 23 AC5 4 HOH O . ? HOH A 526 . ? 1_555 ? 24 AC5 4 HOH O . ? HOH A 560 . ? 1_555 ? 25 AC6 3 GLU A 64 ? GLU A 138 . ? 1_555 ? 26 AC6 3 GLU A 67 ? GLU A 141 . ? 1_555 ? 27 AC6 3 ASP A 95 ? ASP A 169 . ? 4_555 ? 28 AC7 5 GLU A 47 ? GLU A 121 . ? 3_565 ? 29 AC7 5 GLU A 117 ? GLU A 191 . ? 3_565 ? 30 AC7 5 HIS A 197 ? HIS A 271 . ? 1_555 ? 31 AC7 5 HOH O . ? HOH A 507 . ? 1_555 ? 32 AC7 5 HOH O . ? HOH A 539 . ? 3_565 ? 33 AC8 1 ASP A 216 ? ASP A 290 . ? 1_555 ? 34 AC9 3 DTT C . ? DTT A 402 . ? 1_555 ? 35 AC9 3 DTT C . ? DTT A 402 . ? 3_565 ? 36 AC9 3 DTT C . ? DTT A 402 . ? 2_665 ? 37 BC1 5 ARG A 108 ? ARG A 182 . ? 1_555 ? 38 BC1 5 PRO A 109 ? PRO A 183 . ? 1_555 ? 39 BC1 5 LEU A 110 ? LEU A 184 . ? 1_555 ? 40 BC1 5 ASN A 208 ? ASN A 282 . ? 1_555 ? 41 BC1 5 ILE A 209 ? ILE A 283 . ? 1_555 ? 42 BC2 5 ILE A 34 ? ILE A 108 . ? 1_555 ? 43 BC2 5 ALA A 35 ? ALA A 109 . ? 1_555 ? 44 BC2 5 SER A 38 ? SER A 112 . ? 1_555 ? 45 BC2 5 SER A 106 ? SER A 180 . ? 1_555 ? 46 BC2 5 PRO A 109 ? PRO A 183 . ? 1_555 ? 47 BC3 5 SER A 43 ? SER A 117 . ? 1_555 ? 48 BC3 5 MET A 45 ? MET A 119 . ? 1_555 ? 49 BC3 5 VAL A 48 ? VAL A 122 . ? 1_555 ? 50 BC3 5 ASP A 71 ? ASP A 145 . ? 1_555 ? 51 BC3 5 VAL A 72 ? VAL A 146 . ? 1_555 ? 52 BC4 4 ASN A 112 ? ASN A 186 . ? 1_555 ? 53 BC4 4 ASP A 115 ? ASP A 189 . ? 1_555 ? 54 BC4 4 HOH O . ? HOH A 505 . ? 1_555 ? 55 BC4 4 HOH O . ? HOH A 508 . ? 1_555 ? # _database_PDB_matrix.entry_id 4NAK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4NAK _atom_sites.fract_transf_matrix[1][1] 0.013291 _atom_sites.fract_transf_matrix[1][2] 0.007673 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015347 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004461 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CD K N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 75 ? ? ? A . n A 1 2 GLU 2 76 76 GLU GLU A . n A 1 3 LYS 3 77 77 LYS LYS A . n A 1 4 SER 4 78 78 SER SER A . n A 1 5 VAL 5 79 79 VAL VAL A . n A 1 6 SER 6 80 80 SER SER A . n A 1 7 VAL 7 81 81 VAL VAL A . n A 1 8 ILE 8 82 82 ILE ILE A . n A 1 9 LEU 9 83 83 LEU LEU A . n A 1 10 LEU 10 84 84 LEU LEU A . n A 1 11 ALA 11 85 85 ALA ALA A . n A 1 12 GLY 12 86 86 GLY GLY A . n A 1 13 GLY 13 87 87 GLY GLY A . n A 1 14 GLN 14 88 ? ? ? A . n A 1 15 GLY 15 89 ? ? ? A . n A 1 16 LYS 16 90 ? ? ? A . n A 1 17 ARG 17 91 ? ? ? A . n A 1 18 MET 18 92 ? ? ? A . n A 1 19 LYS 19 93 ? ? ? A . n A 1 20 MET 20 94 ? ? ? A . n A 1 21 SER 21 95 ? ? ? A . n A 1 22 MET 22 96 ? ? ? A . n A 1 23 PRO 23 97 97 PRO PRO A . n A 1 24 LYS 24 98 98 LYS LYS A . n A 1 25 GLN 25 99 99 GLN GLN A . n A 1 26 TYR 26 100 100 TYR TYR A . n A 1 27 ILE 27 101 101 ILE ILE A . n A 1 28 PRO 28 102 102 PRO PRO A . n A 1 29 LEU 29 103 103 LEU LEU A . n A 1 30 LEU 30 104 104 LEU LEU A . n A 1 31 GLY 31 105 105 GLY GLY A . n A 1 32 GLN 32 106 106 GLN GLN A . n A 1 33 PRO 33 107 107 PRO PRO A . n A 1 34 ILE 34 108 108 ILE ILE A . n A 1 35 ALA 35 109 109 ALA ALA A . n A 1 36 LEU 36 110 110 LEU LEU A . n A 1 37 TYR 37 111 111 TYR TYR A . n A 1 38 SER 38 112 112 SER SER A . n A 1 39 PHE 39 113 113 PHE PHE A . n A 1 40 PHE 40 114 114 PHE PHE A . n A 1 41 THR 41 115 115 THR THR A . n A 1 42 PHE 42 116 116 PHE PHE A . n A 1 43 SER 43 117 117 SER SER A . n A 1 44 ARG 44 118 118 ARG ARG A . n A 1 45 MET 45 119 119 MET MET A . n A 1 46 PRO 46 120 120 PRO PRO A . n A 1 47 GLU 47 121 121 GLU GLU A . n A 1 48 VAL 48 122 122 VAL VAL A . n A 1 49 LYS 49 123 123 LYS LYS A . n A 1 50 GLU 50 124 124 GLU GLU A . n A 1 51 ILE 51 125 125 ILE ILE A . n A 1 52 VAL 52 126 126 VAL VAL A . n A 1 53 VAL 53 127 127 VAL VAL A . n A 1 54 VAL 54 128 128 VAL VAL A . n A 1 55 CYS 55 129 129 CYS CYS A . n A 1 56 ASP 56 130 130 ASP ASP A . n A 1 57 PRO 57 131 131 PRO PRO A . n A 1 58 PHE 58 132 132 PHE PHE A . n A 1 59 PHE 59 133 133 PHE PHE A . n A 1 60 ARG 60 134 134 ARG ARG A . n A 1 61 ASP 61 135 135 ASP ASP A . n A 1 62 ILE 62 136 136 ILE ILE A . n A 1 63 PHE 63 137 137 PHE PHE A . n A 1 64 GLU 64 138 138 GLU GLU A . n A 1 65 GLU 65 139 139 GLU GLU A . n A 1 66 TYR 66 140 140 TYR TYR A . n A 1 67 GLU 67 141 141 GLU GLU A . n A 1 68 GLU 68 142 142 GLU GLU A . n A 1 69 SER 69 143 143 SER SER A . n A 1 70 ILE 70 144 144 ILE ILE A . n A 1 71 ASP 71 145 145 ASP ASP A . n A 1 72 VAL 72 146 146 VAL VAL A . n A 1 73 ASP 73 147 147 ASP ASP A . n A 1 74 LEU 74 148 148 LEU LEU A . n A 1 75 SER 75 149 149 SER SER A . n A 1 76 PHE 76 150 150 PHE PHE A . n A 1 77 ALA 77 151 151 ALA ALA A . n A 1 78 ILE 78 152 152 ILE ILE A . n A 1 79 PRO 79 153 153 PRO PRO A . n A 1 80 GLY 80 154 154 GLY GLY A . n A 1 81 LYS 81 155 155 LYS LYS A . n A 1 82 GLU 82 156 156 GLU GLU A . n A 1 83 ARG 83 157 157 ARG ARG A . n A 1 84 GLN 84 158 158 GLN GLN A . n A 1 85 ASP 85 159 159 ASP ASP A . n A 1 86 SER 86 160 160 SER SER A . n A 1 87 VAL 87 161 161 VAL VAL A . n A 1 88 TYR 88 162 162 TYR TYR A . n A 1 89 SER 89 163 163 SER SER A . n A 1 90 GLY 90 164 164 GLY GLY A . n A 1 91 LEU 91 165 165 LEU LEU A . n A 1 92 GLN 92 166 166 GLN GLN A . n A 1 93 GLU 93 167 167 GLU GLU A . n A 1 94 ILE 94 168 168 ILE ILE A . n A 1 95 ASP 95 169 169 ASP ASP A . n A 1 96 VAL 96 170 170 VAL VAL A . n A 1 97 ASN 97 171 171 ASN ASN A . n A 1 98 SER 98 172 172 SER SER A . n A 1 99 GLU 99 173 173 GLU GLU A . n A 1 100 LEU 100 174 174 LEU LEU A . n A 1 101 VAL 101 175 175 VAL VAL A . n A 1 102 CYS 102 176 176 CYS CYS A . n A 1 103 ILE 103 177 177 ILE ILE A . n A 1 104 HIS 104 178 178 HIS HIS A . n A 1 105 ASP 105 179 179 ASP ASP A . n A 1 106 SER 106 180 180 SER SER A . n A 1 107 ALA 107 181 181 ALA ALA A . n A 1 108 ARG 108 182 182 ARG ARG A . n A 1 109 PRO 109 183 183 PRO PRO A . n A 1 110 LEU 110 184 184 LEU LEU A . n A 1 111 VAL 111 185 185 VAL VAL A . n A 1 112 ASN 112 186 186 ASN ASN A . n A 1 113 THR 113 187 187 THR THR A . n A 1 114 GLU 114 188 188 GLU GLU A . n A 1 115 ASP 115 189 189 ASP ASP A . n A 1 116 VAL 116 190 190 VAL VAL A . n A 1 117 GLU 117 191 191 GLU GLU A . n A 1 118 LYS 118 192 192 LYS LYS A . n A 1 119 VAL 119 193 193 VAL VAL A . n A 1 120 LEU 120 194 194 LEU LEU A . n A 1 121 LYS 121 195 195 LYS LYS A . n A 1 122 ASP 122 196 196 ASP ASP A . n A 1 123 GLY 123 197 197 GLY GLY A . n A 1 124 SER 124 198 198 SER SER A . n A 1 125 ALA 125 199 199 ALA ALA A . n A 1 126 VAL 126 200 200 VAL VAL A . n A 1 127 GLY 127 201 201 GLY GLY A . n A 1 128 ALA 128 202 202 ALA ALA A . n A 1 129 ALA 129 203 203 ALA ALA A . n A 1 130 VAL 130 204 204 VAL VAL A . n A 1 131 LEU 131 205 205 LEU LEU A . n A 1 132 GLY 132 206 206 GLY GLY A . n A 1 133 VAL 133 207 207 VAL VAL A . n A 1 134 PRO 134 208 208 PRO PRO A . n A 1 135 ALA 135 209 209 ALA ALA A . n A 1 136 LYS 136 210 210 LYS LYS A . n A 1 137 ALA 137 211 211 ALA ALA A . n A 1 138 THR 138 212 212 THR THR A . n A 1 139 ILE 139 213 213 ILE ILE A . n A 1 140 LYS 140 214 214 LYS LYS A . n A 1 141 GLU 141 215 215 GLU GLU A . n A 1 142 VAL 142 216 216 VAL VAL A . n A 1 143 ASN 143 217 217 ASN ASN A . n A 1 144 SER 144 218 218 SER SER A . n A 1 145 ASP 145 219 219 ASP ASP A . n A 1 146 SER 146 220 220 SER SER A . n A 1 147 LEU 147 221 221 LEU LEU A . n A 1 148 VAL 148 222 222 VAL VAL A . n A 1 149 VAL 149 223 223 VAL VAL A . n A 1 150 LYS 150 224 224 LYS LYS A . n A 1 151 THR 151 225 ? ? ? A . n A 1 152 LEU 152 226 ? ? ? A . n A 1 153 ASP 153 227 ? ? ? A . n A 1 154 ARG 154 228 ? ? ? A . n A 1 155 LYS 155 229 ? ? ? A . n A 1 156 THR 156 230 230 THR THR A . n A 1 157 LEU 157 231 231 LEU LEU A . n A 1 158 TRP 158 232 232 TRP TRP A . n A 1 159 GLU 159 233 233 GLU GLU A . n A 1 160 MET 160 234 234 MET MET A . n A 1 161 GLN 161 235 235 GLN GLN A . n A 1 162 THR 162 236 236 THR THR A . n A 1 163 PRO 163 237 237 PRO PRO A . n A 1 164 GLN 164 238 238 GLN GLN A . n A 1 165 VAL 165 239 239 VAL VAL A . n A 1 166 ILE 166 240 240 ILE ILE A . n A 1 167 LYS 167 241 241 LYS LYS A . n A 1 168 PRO 168 242 242 PRO PRO A . n A 1 169 GLU 169 243 243 GLU GLU A . n A 1 170 LEU 170 244 244 LEU LEU A . n A 1 171 LEU 171 245 245 LEU LEU A . n A 1 172 LYS 172 246 246 LYS LYS A . n A 1 173 LYS 173 247 247 LYS LYS A . n A 1 174 GLY 174 248 248 GLY GLY A . n A 1 175 PHE 175 249 249 PHE PHE A . n A 1 176 GLU 176 250 250 GLU GLU A . n A 1 177 LEU 177 251 251 LEU LEU A . n A 1 178 VAL 178 252 252 VAL VAL A . n A 1 179 LYS 179 253 253 LYS LYS A . n A 1 180 SER 180 254 254 SER SER A . n A 1 181 GLU 181 255 255 GLU GLU A . n A 1 182 GLY 182 256 256 GLY GLY A . n A 1 183 LEU 183 257 257 LEU LEU A . n A 1 184 GLU 184 258 258 GLU GLU A . n A 1 185 VAL 185 259 259 VAL VAL A . n A 1 186 THR 186 260 260 THR THR A . n A 1 187 ASP 187 261 261 ASP ASP A . n A 1 188 ASP 188 262 262 ASP ASP A . n A 1 189 VAL 189 263 263 VAL VAL A . n A 1 190 SER 190 264 264 SER SER A . n A 1 191 ILE 191 265 265 ILE ILE A . n A 1 192 VAL 192 266 266 VAL VAL A . n A 1 193 GLU 193 267 267 GLU GLU A . n A 1 194 TYR 194 268 268 TYR TYR A . n A 1 195 LEU 195 269 269 LEU LEU A . n A 1 196 LYS 196 270 270 LYS LYS A . n A 1 197 HIS 197 271 271 HIS HIS A . n A 1 198 PRO 198 272 272 PRO PRO A . n A 1 199 VAL 199 273 273 VAL VAL A . n A 1 200 TYR 200 274 274 TYR TYR A . n A 1 201 VAL 201 275 275 VAL VAL A . n A 1 202 SER 202 276 276 SER SER A . n A 1 203 GLN 203 277 277 GLN GLN A . n A 1 204 GLY 204 278 278 GLY GLY A . n A 1 205 SER 205 279 279 SER SER A . n A 1 206 TYR 206 280 280 TYR TYR A . n A 1 207 THR 207 281 281 THR THR A . n A 1 208 ASN 208 282 282 ASN ASN A . n A 1 209 ILE 209 283 283 ILE ILE A . n A 1 210 LYS 210 284 284 LYS LYS A . n A 1 211 VAL 211 285 285 VAL VAL A . n A 1 212 THR 212 286 286 THR THR A . n A 1 213 THR 213 287 287 THR THR A . n A 1 214 PRO 214 288 288 PRO PRO A . n A 1 215 ASP 215 289 289 ASP ASP A . n A 1 216 ASP 216 290 290 ASP ASP A . n A 1 217 LEU 217 291 291 LEU LEU A . n A 1 218 LEU 218 292 292 LEU LEU A . n A 1 219 LEU 219 293 293 LEU LEU A . n A 1 220 ALA 220 294 294 ALA ALA A . n A 1 221 GLU 221 295 295 GLU GLU A . n A 1 222 ARG 222 296 296 ARG ARG A . n A 1 223 ILE 223 297 297 ILE ILE A . n A 1 224 LEU 224 298 298 LEU LEU A . n A 1 225 SER 225 299 ? ? ? A . n A 1 226 GLU 226 300 ? ? ? A . n A 1 227 ASP 227 301 ? ? ? A . n A 1 228 SER 228 302 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PBQ 1 401 1 PBQ LIG A . C 3 DTT 1 402 1 DTT DTT A . D 4 CD 1 403 1 CD CD A . E 4 CD 1 404 404 CD CD A . F 4 CD 1 405 3 CD CD A . G 4 CD 1 406 4 CD CD A . H 4 CD 1 407 5 CD CD A . I 5 K 1 408 6 K K A . J 5 K 1 409 7 K K A . K 5 K 1 410 8 K K A . L 5 K 1 411 19 K K A . M 5 K 1 412 10 K K A . N 5 K 1 413 11 K K A . O 6 HOH 1 501 12 HOH HOH A . O 6 HOH 2 502 13 HOH HOH A . O 6 HOH 3 503 15 HOH HOH A . O 6 HOH 4 504 16 HOH HOH A . O 6 HOH 5 505 19 HOH HOH A . O 6 HOH 6 506 20 HOH HOH A . O 6 HOH 7 507 22 HOH HOH A . O 6 HOH 8 508 23 HOH HOH A . O 6 HOH 9 509 24 HOH HOH A . O 6 HOH 10 510 25 HOH HOH A . O 6 HOH 11 511 26 HOH HOH A . O 6 HOH 12 512 27 HOH HOH A . O 6 HOH 13 513 28 HOH HOH A . O 6 HOH 14 514 29 HOH HOH A . O 6 HOH 15 515 30 HOH HOH A . O 6 HOH 16 516 31 HOH HOH A . O 6 HOH 17 517 32 HOH HOH A . O 6 HOH 18 518 33 HOH HOH A . O 6 HOH 19 519 34 HOH HOH A . O 6 HOH 20 520 37 HOH HOH A . O 6 HOH 21 521 38 HOH HOH A . O 6 HOH 22 522 39 HOH HOH A . O 6 HOH 23 523 40 HOH HOH A . O 6 HOH 24 524 41 HOH HOH A . O 6 HOH 25 525 42 HOH HOH A . O 6 HOH 26 526 43 HOH HOH A . O 6 HOH 27 527 44 HOH HOH A . O 6 HOH 28 528 45 HOH HOH A . O 6 HOH 29 529 46 HOH HOH A . O 6 HOH 30 530 48 HOH HOH A . O 6 HOH 31 531 49 HOH HOH A . O 6 HOH 32 532 51 HOH HOH A . O 6 HOH 33 533 52 HOH HOH A . O 6 HOH 34 534 53 HOH HOH A . O 6 HOH 35 535 54 HOH HOH A . O 6 HOH 36 536 56 HOH HOH A . O 6 HOH 37 537 57 HOH HOH A . O 6 HOH 38 538 58 HOH HOH A . O 6 HOH 39 539 61 HOH HOH A . O 6 HOH 40 540 62 HOH HOH A . O 6 HOH 41 541 63 HOH HOH A . O 6 HOH 42 542 64 HOH HOH A . O 6 HOH 43 543 65 HOH HOH A . O 6 HOH 44 544 66 HOH HOH A . O 6 HOH 45 545 67 HOH HOH A . O 6 HOH 46 546 68 HOH HOH A . O 6 HOH 47 547 69 HOH HOH A . O 6 HOH 48 548 70 HOH HOH A . O 6 HOH 49 549 71 HOH HOH A . O 6 HOH 50 550 72 HOH HOH A . O 6 HOH 51 551 73 HOH HOH A . O 6 HOH 52 552 74 HOH HOH A . O 6 HOH 53 553 75 HOH HOH A . O 6 HOH 54 554 76 HOH HOH A . O 6 HOH 55 555 77 HOH HOH A . O 6 HOH 56 556 78 HOH HOH A . O 6 HOH 57 557 79 HOH HOH A . O 6 HOH 58 558 80 HOH HOH A . O 6 HOH 59 559 81 HOH HOH A . O 6 HOH 60 560 82 HOH HOH A . O 6 HOH 61 561 83 HOH HOH A . O 6 HOH 62 562 85 HOH HOH A . O 6 HOH 63 563 86 HOH HOH A . O 6 HOH 64 564 87 HOH HOH A . O 6 HOH 65 565 90 HOH HOH A . O 6 HOH 66 566 92 HOH HOH A . O 6 HOH 67 567 93 HOH HOH A . O 6 HOH 68 568 94 HOH HOH A . O 6 HOH 69 569 96 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3090 ? 1 MORE -8 ? 1 'SSA (A^2)' 20290 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 17_554 x-y+1/3,-y+2/3,-z-1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 43.4398342538 0.0000000000 0.0000000000 -1.0000000000 -74.7133333333 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CD 404 ? E CD . 2 1 A K 409 ? J K . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ILE 34 ? A ILE 108 ? 1_555 K ? L K . ? A K 411 ? 1_555 O ? A ALA 35 ? A ALA 109 ? 1_555 70.6 ? 2 O ? A ILE 34 ? A ILE 108 ? 1_555 K ? L K . ? A K 411 ? 1_555 OG ? A SER 38 ? A SER 112 ? 1_555 141.1 ? 3 O ? A ALA 35 ? A ALA 109 ? 1_555 K ? L K . ? A K 411 ? 1_555 OG ? A SER 38 ? A SER 112 ? 1_555 75.3 ? 4 O ? A ILE 34 ? A ILE 108 ? 1_555 K ? L K . ? A K 411 ? 1_555 O ? A SER 106 ? A SER 180 ? 1_555 92.9 ? 5 O ? A ALA 35 ? A ALA 109 ? 1_555 K ? L K . ? A K 411 ? 1_555 O ? A SER 106 ? A SER 180 ? 1_555 106.7 ? 6 OG ? A SER 38 ? A SER 112 ? 1_555 K ? L K . ? A K 411 ? 1_555 O ? A SER 106 ? A SER 180 ? 1_555 114.7 ? 7 O ? A SER 43 ? A SER 117 ? 1_555 K ? M K . ? A K 412 ? 1_555 O ? A MET 45 ? A MET 119 ? 1_555 97.1 ? 8 O ? A SER 43 ? A SER 117 ? 1_555 K ? M K . ? A K 412 ? 1_555 O ? A VAL 48 ? A VAL 122 ? 1_555 123.5 ? 9 O ? A MET 45 ? A MET 119 ? 1_555 K ? M K . ? A K 412 ? 1_555 O ? A VAL 48 ? A VAL 122 ? 1_555 75.7 ? 10 O ? A SER 43 ? A SER 117 ? 1_555 K ? M K . ? A K 412 ? 1_555 O ? A ASP 71 ? A ASP 145 ? 1_555 92.0 ? 11 O ? A MET 45 ? A MET 119 ? 1_555 K ? M K . ? A K 412 ? 1_555 O ? A ASP 71 ? A ASP 145 ? 1_555 164.7 ? 12 O ? A VAL 48 ? A VAL 122 ? 1_555 K ? M K . ? A K 412 ? 1_555 O ? A ASP 71 ? A ASP 145 ? 1_555 89.1 ? 13 OE2 ? A GLU 64 ? A GLU 138 ? 1_555 CD ? G CD . ? A CD 406 ? 1_555 OE1 ? A GLU 67 ? A GLU 141 ? 1_555 94.9 ? 14 OE1 ? A GLU 93 ? A GLU 167 ? 1_555 CD ? E CD . ? A CD 404 ? 1_555 OE2 ? A GLU 93 ? A GLU 167 ? 1_555 52.6 ? 15 OD2 ? A ASP 115 ? A ASP 189 ? 1_555 K ? N K . ? A K 413 ? 1_555 O ? O HOH . ? A HOH 505 ? 1_555 121.6 ? 16 OD2 ? A ASP 115 ? A ASP 189 ? 1_555 K ? N K . ? A K 413 ? 1_555 O ? O HOH . ? A HOH 508 ? 1_555 82.9 ? 17 O ? O HOH . ? A HOH 505 ? 1_555 K ? N K . ? A K 413 ? 1_555 O ? O HOH . ? A HOH 508 ? 1_555 122.5 ? 18 OE1 ? A GLN 164 ? A GLN 238 ? 1_555 CD ? D CD . ? A CD 403 ? 1_555 N11 ? B PBQ . ? A PBQ 401 ? 1_555 82.6 ? 19 OE1 ? A GLN 164 ? A GLN 238 ? 1_555 CD ? D CD . ? A CD 403 ? 1_555 O ? B PBQ . ? A PBQ 401 ? 1_555 96.3 ? 20 N11 ? B PBQ . ? A PBQ 401 ? 1_555 CD ? D CD . ? A CD 403 ? 1_555 O ? B PBQ . ? A PBQ 401 ? 1_555 82.8 ? 21 OD1 ? A ASP 187 ? A ASP 261 ? 1_555 CD ? F CD . ? A CD 405 ? 1_555 O ? O HOH . ? A HOH 517 ? 1_555 137.0 ? 22 OD1 ? A ASP 187 ? A ASP 261 ? 1_555 CD ? F CD . ? A CD 405 ? 1_555 O ? O HOH . ? A HOH 560 ? 1_555 71.5 ? 23 O ? O HOH . ? A HOH 517 ? 1_555 CD ? F CD . ? A CD 405 ? 1_555 O ? O HOH . ? A HOH 560 ? 1_555 65.5 ? 24 ND1 ? A HIS 197 ? A HIS 271 ? 1_555 CD ? H CD . ? A CD 407 ? 1_555 O ? O HOH . ? A HOH 507 ? 1_555 107.7 ? 25 OD1 ? A ASN 208 ? A ASN 282 ? 1_555 K ? K K . ? A K 410 ? 1_555 O ? A ILE 209 ? A ILE 283 ? 1_555 111.2 ? 26 OD2 ? A ASP 216 ? A ASP 290 ? 1_555 K ? I K . ? A K 408 ? 1_555 OD1 ? A ASP 216 ? A ASP 290 ? 1_555 41.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-01-29 2 'Structure model' 1 1 2014-02-26 3 'Structure model' 1 2 2014-05-21 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.value' 21 4 'Structure model' '_struct_conn.pdbx_dist_value' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 4 'Structure model' '_struct_ref_seq_dif.details' 34 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 12.6668 _pdbx_refine_tls.origin_y 25.6812 _pdbx_refine_tls.origin_z -19.4394 _pdbx_refine_tls.T[1][1] 0.0117 _pdbx_refine_tls.T[2][2] 0.0265 _pdbx_refine_tls.T[3][3] 0.0737 _pdbx_refine_tls.T[1][2] 0.0139 _pdbx_refine_tls.T[1][3] -0.0125 _pdbx_refine_tls.T[2][3] 0.0083 _pdbx_refine_tls.L[1][1] 0.2472 _pdbx_refine_tls.L[2][2] 0.2892 _pdbx_refine_tls.L[3][3] 0.3064 _pdbx_refine_tls.L[1][2] 0.2639 _pdbx_refine_tls.L[1][3] 0.0210 _pdbx_refine_tls.L[2][3] -0.0170 _pdbx_refine_tls.S[1][1] 0.0140 _pdbx_refine_tls.S[1][2] -0.0223 _pdbx_refine_tls.S[1][3] -0.1315 _pdbx_refine_tls.S[2][1] 0.0194 _pdbx_refine_tls.S[2][2] -0.0311 _pdbx_refine_tls.S[2][3] -0.1450 _pdbx_refine_tls.S[3][1] -0.0229 _pdbx_refine_tls.S[3][2] -0.0415 _pdbx_refine_tls.S[3][3] 0.0171 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 76 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 298 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 REFMAC refinement . ? 2 XDS 'data reduction' . ? 3 XSCALE 'data scaling' . ? 4 REFMAC phasing . ? 5 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 538 ? ? 1_555 O A HOH 538 ? ? 2_665 1.38 2 1 O A HOH 507 ? ? 1_555 O A HOH 539 ? ? 3_565 2.02 3 1 OE2 A GLU 191 ? ? 1_555 CD A CD 407 ? ? 2_665 2.17 4 1 OE2 A GLU 121 ? ? 1_555 CD A CD 407 ? ? 2_665 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 235 ? ? -119.05 -162.55 2 1 VAL A 263 ? ? -100.96 75.53 3 1 THR A 286 ? ? -131.56 -52.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 75 ? A MET 1 2 1 Y 1 A GLN 88 ? A GLN 14 3 1 Y 1 A GLY 89 ? A GLY 15 4 1 Y 1 A LYS 90 ? A LYS 16 5 1 Y 1 A ARG 91 ? A ARG 17 6 1 Y 1 A MET 92 ? A MET 18 7 1 Y 1 A LYS 93 ? A LYS 19 8 1 Y 1 A MET 94 ? A MET 20 9 1 Y 1 A SER 95 ? A SER 21 10 1 Y 1 A MET 96 ? A MET 22 11 1 Y 1 A THR 225 ? A THR 151 12 1 Y 1 A LEU 226 ? A LEU 152 13 1 Y 1 A ASP 227 ? A ASP 153 14 1 Y 1 A ARG 228 ? A ARG 154 15 1 Y 1 A LYS 229 ? A LYS 155 16 1 Y 1 A SER 299 ? A SER 225 17 1 Y 1 A GLU 300 ? A GLU 226 18 1 Y 1 A ASP 301 ? A ASP 227 19 1 Y 1 A SER 302 ? A SER 228 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CD CD CD N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DTT S1 S N N 89 DTT C1 C N N 90 DTT C2 C N R 91 DTT O2 O N N 92 DTT C3 C N R 93 DTT O3 O N N 94 DTT C4 C N N 95 DTT S4 S N N 96 DTT HS1 H N N 97 DTT H11 H N N 98 DTT H12 H N N 99 DTT H2 H N N 100 DTT HO2 H N N 101 DTT H3 H N N 102 DTT HO3 H N N 103 DTT H41 H N N 104 DTT H42 H N N 105 DTT HS2 H N N 106 GLN N N N N 107 GLN CA C N S 108 GLN C C N N 109 GLN O O N N 110 GLN CB C N N 111 GLN CG C N N 112 GLN CD C N N 113 GLN OE1 O N N 114 GLN NE2 N N N 115 GLN OXT O N N 116 GLN H H N N 117 GLN H2 H N N 118 GLN HA H N N 119 GLN HB2 H N N 120 GLN HB3 H N N 121 GLN HG2 H N N 122 GLN HG3 H N N 123 GLN HE21 H N N 124 GLN HE22 H N N 125 GLN HXT H N N 126 GLU N N N N 127 GLU CA C N S 128 GLU C C N N 129 GLU O O N N 130 GLU CB C N N 131 GLU CG C N N 132 GLU CD C N N 133 GLU OE1 O N N 134 GLU OE2 O N N 135 GLU OXT O N N 136 GLU H H N N 137 GLU H2 H N N 138 GLU HA H N N 139 GLU HB2 H N N 140 GLU HB3 H N N 141 GLU HG2 H N N 142 GLU HG3 H N N 143 GLU HE2 H N N 144 GLU HXT H N N 145 GLY N N N N 146 GLY CA C N N 147 GLY C C N N 148 GLY O O N N 149 GLY OXT O N N 150 GLY H H N N 151 GLY H2 H N N 152 GLY HA2 H N N 153 GLY HA3 H N N 154 GLY HXT H N N 155 HIS N N N N 156 HIS CA C N S 157 HIS C C N N 158 HIS O O N N 159 HIS CB C N N 160 HIS CG C Y N 161 HIS ND1 N Y N 162 HIS CD2 C Y N 163 HIS CE1 C Y N 164 HIS NE2 N Y N 165 HIS OXT O N N 166 HIS H H N N 167 HIS H2 H N N 168 HIS HA H N N 169 HIS HB2 H N N 170 HIS HB3 H N N 171 HIS HD1 H N N 172 HIS HD2 H N N 173 HIS HE1 H N N 174 HIS HE2 H N N 175 HIS HXT H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 ILE N N N N 180 ILE CA C N S 181 ILE C C N N 182 ILE O O N N 183 ILE CB C N S 184 ILE CG1 C N N 185 ILE CG2 C N N 186 ILE CD1 C N N 187 ILE OXT O N N 188 ILE H H N N 189 ILE H2 H N N 190 ILE HA H N N 191 ILE HB H N N 192 ILE HG12 H N N 193 ILE HG13 H N N 194 ILE HG21 H N N 195 ILE HG22 H N N 196 ILE HG23 H N N 197 ILE HD11 H N N 198 ILE HD12 H N N 199 ILE HD13 H N N 200 ILE HXT H N N 201 K K K N N 202 LEU N N N N 203 LEU CA C N S 204 LEU C C N N 205 LEU O O N N 206 LEU CB C N N 207 LEU CG C N N 208 LEU CD1 C N N 209 LEU CD2 C N N 210 LEU OXT O N N 211 LEU H H N N 212 LEU H2 H N N 213 LEU HA H N N 214 LEU HB2 H N N 215 LEU HB3 H N N 216 LEU HG H N N 217 LEU HD11 H N N 218 LEU HD12 H N N 219 LEU HD13 H N N 220 LEU HD21 H N N 221 LEU HD22 H N N 222 LEU HD23 H N N 223 LEU HXT H N N 224 LYS N N N N 225 LYS CA C N S 226 LYS C C N N 227 LYS O O N N 228 LYS CB C N N 229 LYS CG C N N 230 LYS CD C N N 231 LYS CE C N N 232 LYS NZ N N N 233 LYS OXT O N N 234 LYS H H N N 235 LYS H2 H N N 236 LYS HA H N N 237 LYS HB2 H N N 238 LYS HB3 H N N 239 LYS HG2 H N N 240 LYS HG3 H N N 241 LYS HD2 H N N 242 LYS HD3 H N N 243 LYS HE2 H N N 244 LYS HE3 H N N 245 LYS HZ1 H N N 246 LYS HZ2 H N N 247 LYS HZ3 H N N 248 LYS HXT H N N 249 MET N N N N 250 MET CA C N S 251 MET C C N N 252 MET O O N N 253 MET CB C N N 254 MET CG C N N 255 MET SD S N N 256 MET CE C N N 257 MET OXT O N N 258 MET H H N N 259 MET H2 H N N 260 MET HA H N N 261 MET HB2 H N N 262 MET HB3 H N N 263 MET HG2 H N N 264 MET HG3 H N N 265 MET HE1 H N N 266 MET HE2 H N N 267 MET HE3 H N N 268 MET HXT H N N 269 PBQ CH C Y N 270 PBQ CG C Y N 271 PBQ CD1 C Y N 272 PBQ CD2 C Y N 273 PBQ CE2 C Y N 274 PBQ CR C Y N 275 PBQ O O N N 276 PBQ C3 C Y N 277 PBQ C7 C Y N 278 PBQ C8 C Y N 279 PBQ C9 C Y N 280 PBQ N11 N Y N 281 PBQ BR13 BR N N 282 PBQ BR14 BR N N 283 PBQ BR17 BR N N 284 PBQ BR18 BR N N 285 PBQ BR19 BR N N 286 PBQ H3 H N N 287 PBQ HD2 H N N 288 PBQ H11 H N N 289 PBQ H H N N 290 PHE N N N N 291 PHE CA C N S 292 PHE C C N N 293 PHE O O N N 294 PHE CB C N N 295 PHE CG C Y N 296 PHE CD1 C Y N 297 PHE CD2 C Y N 298 PHE CE1 C Y N 299 PHE CE2 C Y N 300 PHE CZ C Y N 301 PHE OXT O N N 302 PHE H H N N 303 PHE H2 H N N 304 PHE HA H N N 305 PHE HB2 H N N 306 PHE HB3 H N N 307 PHE HD1 H N N 308 PHE HD2 H N N 309 PHE HE1 H N N 310 PHE HE2 H N N 311 PHE HZ H N N 312 PHE HXT H N N 313 PRO N N N N 314 PRO CA C N S 315 PRO C C N N 316 PRO O O N N 317 PRO CB C N N 318 PRO CG C N N 319 PRO CD C N N 320 PRO OXT O N N 321 PRO H H N N 322 PRO HA H N N 323 PRO HB2 H N N 324 PRO HB3 H N N 325 PRO HG2 H N N 326 PRO HG3 H N N 327 PRO HD2 H N N 328 PRO HD3 H N N 329 PRO HXT H N N 330 SER N N N N 331 SER CA C N S 332 SER C C N N 333 SER O O N N 334 SER CB C N N 335 SER OG O N N 336 SER OXT O N N 337 SER H H N N 338 SER H2 H N N 339 SER HA H N N 340 SER HB2 H N N 341 SER HB3 H N N 342 SER HG H N N 343 SER HXT H N N 344 THR N N N N 345 THR CA C N S 346 THR C C N N 347 THR O O N N 348 THR CB C N R 349 THR OG1 O N N 350 THR CG2 C N N 351 THR OXT O N N 352 THR H H N N 353 THR H2 H N N 354 THR HA H N N 355 THR HB H N N 356 THR HG1 H N N 357 THR HG21 H N N 358 THR HG22 H N N 359 THR HG23 H N N 360 THR HXT H N N 361 TRP N N N N 362 TRP CA C N S 363 TRP C C N N 364 TRP O O N N 365 TRP CB C N N 366 TRP CG C Y N 367 TRP CD1 C Y N 368 TRP CD2 C Y N 369 TRP NE1 N Y N 370 TRP CE2 C Y N 371 TRP CE3 C Y N 372 TRP CZ2 C Y N 373 TRP CZ3 C Y N 374 TRP CH2 C Y N 375 TRP OXT O N N 376 TRP H H N N 377 TRP H2 H N N 378 TRP HA H N N 379 TRP HB2 H N N 380 TRP HB3 H N N 381 TRP HD1 H N N 382 TRP HE1 H N N 383 TRP HE3 H N N 384 TRP HZ2 H N N 385 TRP HZ3 H N N 386 TRP HH2 H N N 387 TRP HXT H N N 388 TYR N N N N 389 TYR CA C N S 390 TYR C C N N 391 TYR O O N N 392 TYR CB C N N 393 TYR CG C Y N 394 TYR CD1 C Y N 395 TYR CD2 C Y N 396 TYR CE1 C Y N 397 TYR CE2 C Y N 398 TYR CZ C Y N 399 TYR OH O N N 400 TYR OXT O N N 401 TYR H H N N 402 TYR H2 H N N 403 TYR HA H N N 404 TYR HB2 H N N 405 TYR HB3 H N N 406 TYR HD1 H N N 407 TYR HD2 H N N 408 TYR HE1 H N N 409 TYR HE2 H N N 410 TYR HH H N N 411 TYR HXT H N N 412 VAL N N N N 413 VAL CA C N S 414 VAL C C N N 415 VAL O O N N 416 VAL CB C N N 417 VAL CG1 C N N 418 VAL CG2 C N N 419 VAL OXT O N N 420 VAL H H N N 421 VAL H2 H N N 422 VAL HA H N N 423 VAL HB H N N 424 VAL HG11 H N N 425 VAL HG12 H N N 426 VAL HG13 H N N 427 VAL HG21 H N N 428 VAL HG22 H N N 429 VAL HG23 H N N 430 VAL HXT H N N 431 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DTT S1 C1 sing N N 83 DTT S1 HS1 sing N N 84 DTT C1 C2 sing N N 85 DTT C1 H11 sing N N 86 DTT C1 H12 sing N N 87 DTT C2 O2 sing N N 88 DTT C2 C3 sing N N 89 DTT C2 H2 sing N N 90 DTT O2 HO2 sing N N 91 DTT C3 O3 sing N N 92 DTT C3 C4 sing N N 93 DTT C3 H3 sing N N 94 DTT O3 HO3 sing N N 95 DTT C4 S4 sing N N 96 DTT C4 H41 sing N N 97 DTT C4 H42 sing N N 98 DTT S4 HS2 sing N N 99 GLN N CA sing N N 100 GLN N H sing N N 101 GLN N H2 sing N N 102 GLN CA C sing N N 103 GLN CA CB sing N N 104 GLN CA HA sing N N 105 GLN C O doub N N 106 GLN C OXT sing N N 107 GLN CB CG sing N N 108 GLN CB HB2 sing N N 109 GLN CB HB3 sing N N 110 GLN CG CD sing N N 111 GLN CG HG2 sing N N 112 GLN CG HG3 sing N N 113 GLN CD OE1 doub N N 114 GLN CD NE2 sing N N 115 GLN NE2 HE21 sing N N 116 GLN NE2 HE22 sing N N 117 GLN OXT HXT sing N N 118 GLU N CA sing N N 119 GLU N H sing N N 120 GLU N H2 sing N N 121 GLU CA C sing N N 122 GLU CA CB sing N N 123 GLU CA HA sing N N 124 GLU C O doub N N 125 GLU C OXT sing N N 126 GLU CB CG sing N N 127 GLU CB HB2 sing N N 128 GLU CB HB3 sing N N 129 GLU CG CD sing N N 130 GLU CG HG2 sing N N 131 GLU CG HG3 sing N N 132 GLU CD OE1 doub N N 133 GLU CD OE2 sing N N 134 GLU OE2 HE2 sing N N 135 GLU OXT HXT sing N N 136 GLY N CA sing N N 137 GLY N H sing N N 138 GLY N H2 sing N N 139 GLY CA C sing N N 140 GLY CA HA2 sing N N 141 GLY CA HA3 sing N N 142 GLY C O doub N N 143 GLY C OXT sing N N 144 GLY OXT HXT sing N N 145 HIS N CA sing N N 146 HIS N H sing N N 147 HIS N H2 sing N N 148 HIS CA C sing N N 149 HIS CA CB sing N N 150 HIS CA HA sing N N 151 HIS C O doub N N 152 HIS C OXT sing N N 153 HIS CB CG sing N N 154 HIS CB HB2 sing N N 155 HIS CB HB3 sing N N 156 HIS CG ND1 sing Y N 157 HIS CG CD2 doub Y N 158 HIS ND1 CE1 doub Y N 159 HIS ND1 HD1 sing N N 160 HIS CD2 NE2 sing Y N 161 HIS CD2 HD2 sing N N 162 HIS CE1 NE2 sing Y N 163 HIS CE1 HE1 sing N N 164 HIS NE2 HE2 sing N N 165 HIS OXT HXT sing N N 166 HOH O H1 sing N N 167 HOH O H2 sing N N 168 ILE N CA sing N N 169 ILE N H sing N N 170 ILE N H2 sing N N 171 ILE CA C sing N N 172 ILE CA CB sing N N 173 ILE CA HA sing N N 174 ILE C O doub N N 175 ILE C OXT sing N N 176 ILE CB CG1 sing N N 177 ILE CB CG2 sing N N 178 ILE CB HB sing N N 179 ILE CG1 CD1 sing N N 180 ILE CG1 HG12 sing N N 181 ILE CG1 HG13 sing N N 182 ILE CG2 HG21 sing N N 183 ILE CG2 HG22 sing N N 184 ILE CG2 HG23 sing N N 185 ILE CD1 HD11 sing N N 186 ILE CD1 HD12 sing N N 187 ILE CD1 HD13 sing N N 188 ILE OXT HXT sing N N 189 LEU N CA sing N N 190 LEU N H sing N N 191 LEU N H2 sing N N 192 LEU CA C sing N N 193 LEU CA CB sing N N 194 LEU CA HA sing N N 195 LEU C O doub N N 196 LEU C OXT sing N N 197 LEU CB CG sing N N 198 LEU CB HB2 sing N N 199 LEU CB HB3 sing N N 200 LEU CG CD1 sing N N 201 LEU CG CD2 sing N N 202 LEU CG HG sing N N 203 LEU CD1 HD11 sing N N 204 LEU CD1 HD12 sing N N 205 LEU CD1 HD13 sing N N 206 LEU CD2 HD21 sing N N 207 LEU CD2 HD22 sing N N 208 LEU CD2 HD23 sing N N 209 LEU OXT HXT sing N N 210 LYS N CA sing N N 211 LYS N H sing N N 212 LYS N H2 sing N N 213 LYS CA C sing N N 214 LYS CA CB sing N N 215 LYS CA HA sing N N 216 LYS C O doub N N 217 LYS C OXT sing N N 218 LYS CB CG sing N N 219 LYS CB HB2 sing N N 220 LYS CB HB3 sing N N 221 LYS CG CD sing N N 222 LYS CG HG2 sing N N 223 LYS CG HG3 sing N N 224 LYS CD CE sing N N 225 LYS CD HD2 sing N N 226 LYS CD HD3 sing N N 227 LYS CE NZ sing N N 228 LYS CE HE2 sing N N 229 LYS CE HE3 sing N N 230 LYS NZ HZ1 sing N N 231 LYS NZ HZ2 sing N N 232 LYS NZ HZ3 sing N N 233 LYS OXT HXT sing N N 234 MET N CA sing N N 235 MET N H sing N N 236 MET N H2 sing N N 237 MET CA C sing N N 238 MET CA CB sing N N 239 MET CA HA sing N N 240 MET C O doub N N 241 MET C OXT sing N N 242 MET CB CG sing N N 243 MET CB HB2 sing N N 244 MET CB HB3 sing N N 245 MET CG SD sing N N 246 MET CG HG2 sing N N 247 MET CG HG3 sing N N 248 MET SD CE sing N N 249 MET CE HE1 sing N N 250 MET CE HE2 sing N N 251 MET CE HE3 sing N N 252 MET OXT HXT sing N N 253 PBQ CH CR sing Y N 254 PBQ CH C3 doub Y N 255 PBQ CH BR14 sing N N 256 PBQ CG CD1 sing Y N 257 PBQ CG CD2 sing Y N 258 PBQ CG CR doub Y N 259 PBQ CD1 C9 doub Y N 260 PBQ CD1 N11 sing Y N 261 PBQ CD2 CE2 doub Y N 262 PBQ CE2 C3 sing Y N 263 PBQ CE2 BR13 sing N N 264 PBQ CR O sing N N 265 PBQ C7 C8 doub Y N 266 PBQ C7 N11 sing Y N 267 PBQ C7 BR19 sing N N 268 PBQ C8 C9 sing Y N 269 PBQ C8 BR18 sing N N 270 PBQ C9 BR17 sing N N 271 PBQ C3 H3 sing N N 272 PBQ CD2 HD2 sing N N 273 PBQ N11 H11 sing N N 274 PBQ O H sing N N 275 PHE N CA sing N N 276 PHE N H sing N N 277 PHE N H2 sing N N 278 PHE CA C sing N N 279 PHE CA CB sing N N 280 PHE CA HA sing N N 281 PHE C O doub N N 282 PHE C OXT sing N N 283 PHE CB CG sing N N 284 PHE CB HB2 sing N N 285 PHE CB HB3 sing N N 286 PHE CG CD1 doub Y N 287 PHE CG CD2 sing Y N 288 PHE CD1 CE1 sing Y N 289 PHE CD1 HD1 sing N N 290 PHE CD2 CE2 doub Y N 291 PHE CD2 HD2 sing N N 292 PHE CE1 CZ doub Y N 293 PHE CE1 HE1 sing N N 294 PHE CE2 CZ sing Y N 295 PHE CE2 HE2 sing N N 296 PHE CZ HZ sing N N 297 PHE OXT HXT sing N N 298 PRO N CA sing N N 299 PRO N CD sing N N 300 PRO N H sing N N 301 PRO CA C sing N N 302 PRO CA CB sing N N 303 PRO CA HA sing N N 304 PRO C O doub N N 305 PRO C OXT sing N N 306 PRO CB CG sing N N 307 PRO CB HB2 sing N N 308 PRO CB HB3 sing N N 309 PRO CG CD sing N N 310 PRO CG HG2 sing N N 311 PRO CG HG3 sing N N 312 PRO CD HD2 sing N N 313 PRO CD HD3 sing N N 314 PRO OXT HXT sing N N 315 SER N CA sing N N 316 SER N H sing N N 317 SER N H2 sing N N 318 SER CA C sing N N 319 SER CA CB sing N N 320 SER CA HA sing N N 321 SER C O doub N N 322 SER C OXT sing N N 323 SER CB OG sing N N 324 SER CB HB2 sing N N 325 SER CB HB3 sing N N 326 SER OG HG sing N N 327 SER OXT HXT sing N N 328 THR N CA sing N N 329 THR N H sing N N 330 THR N H2 sing N N 331 THR CA C sing N N 332 THR CA CB sing N N 333 THR CA HA sing N N 334 THR C O doub N N 335 THR C OXT sing N N 336 THR CB OG1 sing N N 337 THR CB CG2 sing N N 338 THR CB HB sing N N 339 THR OG1 HG1 sing N N 340 THR CG2 HG21 sing N N 341 THR CG2 HG22 sing N N 342 THR CG2 HG23 sing N N 343 THR OXT HXT sing N N 344 TRP N CA sing N N 345 TRP N H sing N N 346 TRP N H2 sing N N 347 TRP CA C sing N N 348 TRP CA CB sing N N 349 TRP CA HA sing N N 350 TRP C O doub N N 351 TRP C OXT sing N N 352 TRP CB CG sing N N 353 TRP CB HB2 sing N N 354 TRP CB HB3 sing N N 355 TRP CG CD1 doub Y N 356 TRP CG CD2 sing Y N 357 TRP CD1 NE1 sing Y N 358 TRP CD1 HD1 sing N N 359 TRP CD2 CE2 doub Y N 360 TRP CD2 CE3 sing Y N 361 TRP NE1 CE2 sing Y N 362 TRP NE1 HE1 sing N N 363 TRP CE2 CZ2 sing Y N 364 TRP CE3 CZ3 doub Y N 365 TRP CE3 HE3 sing N N 366 TRP CZ2 CH2 doub Y N 367 TRP CZ2 HZ2 sing N N 368 TRP CZ3 CH2 sing Y N 369 TRP CZ3 HZ3 sing N N 370 TRP CH2 HH2 sing N N 371 TRP OXT HXT sing N N 372 TYR N CA sing N N 373 TYR N H sing N N 374 TYR N H2 sing N N 375 TYR CA C sing N N 376 TYR CA CB sing N N 377 TYR CA HA sing N N 378 TYR C O doub N N 379 TYR C OXT sing N N 380 TYR CB CG sing N N 381 TYR CB HB2 sing N N 382 TYR CB HB3 sing N N 383 TYR CG CD1 doub Y N 384 TYR CG CD2 sing Y N 385 TYR CD1 CE1 sing Y N 386 TYR CD1 HD1 sing N N 387 TYR CD2 CE2 doub Y N 388 TYR CD2 HD2 sing N N 389 TYR CE1 CZ doub Y N 390 TYR CE1 HE1 sing N N 391 TYR CE2 CZ sing Y N 392 TYR CE2 HE2 sing N N 393 TYR CZ OH sing N N 394 TYR OH HH sing N N 395 TYR OXT HXT sing N N 396 VAL N CA sing N N 397 VAL N H sing N N 398 VAL N H2 sing N N 399 VAL CA C sing N N 400 VAL CA CB sing N N 401 VAL CA HA sing N N 402 VAL C O doub N N 403 VAL C OXT sing N N 404 VAL CB CG1 sing N N 405 VAL CB CG2 sing N N 406 VAL CB HB sing N N 407 VAL CG1 HG11 sing N N 408 VAL CG1 HG12 sing N N 409 VAL CG1 HG13 sing N N 410 VAL CG2 HG21 sing N N 411 VAL CG2 HG22 sing N N 412 VAL CG2 HG23 sing N N 413 VAL OXT HXT sing N N 414 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 PENTABROMOPSEUDILIN PBQ 3 2,3-DIHYDROXY-1,4-DITHIOBUTANE DTT 4 'CADMIUM ION' CD 5 'POTASSIUM ION' K 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4NAI _pdbx_initial_refinement_model.details 'PDB ENTRY 4NAI' #