HEADER DNA BINDING PROTEIN 22-OCT-13 4NB5 TITLE CRYSTAL STRUCTURE OF A TRANSCRIPTIONAL REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV0678, RVBD_0678; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS DNA BINDING, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.-C.SU,A.RADHAKRISHNAN,E.W.YU REVDAT 4 28-FEB-24 4NB5 1 REMARK SEQADV HETSYN REVDAT 3 18-JUN-14 4NB5 1 JRNL REVDAT 2 21-MAY-14 4NB5 1 JRNL REVDAT 1 23-APR-14 4NB5 0 JRNL AUTH A.RADHAKRISHNAN,N.KUMAR,C.C.WRIGHT,T.H.CHOU,M.L.TRINGIDES, JRNL AUTH 2 J.R.BOLLA,H.T.LEI,K.R.RAJASHANKAR,C.C.SU,G.E.PURDY,E.W.YU JRNL TITL CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR RV0678 OF JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.BIOL.CHEM. V. 289 16526 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24737322 JRNL DOI 10.1074/JBC.M113.538959 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 78052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1783 - 4.9790 0.97 2649 145 0.1880 0.1952 REMARK 3 2 4.9790 - 3.9530 0.99 2715 141 0.1404 0.1522 REMARK 3 3 3.9530 - 3.4536 0.98 2665 140 0.1459 0.1600 REMARK 3 4 3.4536 - 3.1380 0.99 2685 155 0.1556 0.1960 REMARK 3 5 3.1380 - 2.9131 0.99 2708 134 0.1597 0.1700 REMARK 3 6 2.9131 - 2.7414 0.98 2670 136 0.1631 0.1563 REMARK 3 7 2.7414 - 2.6041 0.98 2655 142 0.1525 0.1554 REMARK 3 8 2.6041 - 2.4908 0.98 2691 149 0.1524 0.1769 REMARK 3 9 2.4908 - 2.3949 0.98 2688 148 0.1535 0.1814 REMARK 3 10 2.3949 - 2.3123 0.98 2660 150 0.1532 0.1934 REMARK 3 11 2.3123 - 2.2400 0.97 2641 155 0.1519 0.2018 REMARK 3 12 2.2400 - 2.1760 0.98 2633 137 0.1525 0.2030 REMARK 3 13 2.1760 - 2.1187 0.97 2637 153 0.1582 0.1662 REMARK 3 14 2.1187 - 2.0670 0.97 2679 148 0.1629 0.2021 REMARK 3 15 2.0670 - 2.0200 0.97 2628 162 0.1682 0.2085 REMARK 3 16 2.0200 - 1.9770 0.97 2596 162 0.1730 0.2105 REMARK 3 17 1.9770 - 1.9375 0.97 2673 113 0.1795 0.1970 REMARK 3 18 1.9375 - 1.9009 0.97 2680 125 0.1836 0.2205 REMARK 3 19 1.9009 - 1.8670 0.97 2656 116 0.1878 0.2311 REMARK 3 20 1.8670 - 1.8353 0.97 2655 133 0.1993 0.2503 REMARK 3 21 1.8353 - 1.8057 0.96 2585 135 0.2023 0.2327 REMARK 3 22 1.8057 - 1.7779 0.96 2638 124 0.2071 0.2198 REMARK 3 23 1.7779 - 1.7518 0.96 2637 136 0.2057 0.2498 REMARK 3 24 1.7518 - 1.7271 0.96 2596 146 0.2148 0.2733 REMARK 3 25 1.7271 - 1.7038 0.96 2616 152 0.2192 0.2546 REMARK 3 26 1.7038 - 1.6816 0.95 2624 134 0.2338 0.2662 REMARK 3 27 1.6816 - 1.6606 0.96 2591 133 0.2411 0.2622 REMARK 3 28 1.6606 - 1.6406 0.94 2568 129 0.2353 0.2888 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4899 REMARK 3 ANGLE : 0.902 6590 REMARK 3 CHIRALITY : 0.052 700 REMARK 3 PLANARITY : 0.003 880 REMARK 3 DIHEDRAL : 15.162 1981 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000082980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ACSD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78058 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG1000, 0.05M NACL, 0.1M REMARK 280 NAAC(4.0), AND 4% GLYCEROL, VAPOR DIFFUSION, TEMPERATURE 298K, REMARK 280 PH 4.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 ASN A 6 REMARK 465 ASP A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 ASP A 10 REMARK 465 GLN A 11 REMARK 465 MET A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 162 REMARK 465 THR A 163 REMARK 465 GLY A 164 REMARK 465 GLU A 165 REMARK 465 ASP A 166 REMARK 465 ASP A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 VAL B 3 REMARK 465 SER B 4 REMARK 465 VAL B 5 REMARK 465 ASN B 6 REMARK 465 ASP B 7 REMARK 465 GLY B 8 REMARK 465 VAL B 9 REMARK 465 ASP B 10 REMARK 465 GLN B 11 REMARK 465 MET B 12 REMARK 465 GLY B 13 REMARK 465 ALA B 14 REMARK 465 GLY B 164 REMARK 465 GLU B 165 REMARK 465 ASP B 166 REMARK 465 ASP B 167 REMARK 465 HIS B 168 REMARK 465 HIS B 169 REMARK 465 HIS B 170 REMARK 465 HIS B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 VAL C 3 REMARK 465 SER C 4 REMARK 465 VAL C 5 REMARK 465 ASN C 6 REMARK 465 ASP C 7 REMARK 465 GLY C 8 REMARK 465 VAL C 9 REMARK 465 ASP C 10 REMARK 465 GLN C 11 REMARK 465 MET C 12 REMARK 465 GLY C 13 REMARK 465 ALA C 14 REMARK 465 GLU C 15 REMARK 465 THR C 163 REMARK 465 GLY C 164 REMARK 465 GLU C 165 REMARK 465 ASP C 166 REMARK 465 ASP C 167 REMARK 465 HIS C 168 REMARK 465 HIS C 169 REMARK 465 HIS C 170 REMARK 465 HIS C 171 REMARK 465 HIS C 172 REMARK 465 HIS C 173 REMARK 465 VAL D 3 REMARK 465 SER D 4 REMARK 465 VAL D 5 REMARK 465 ASN D 6 REMARK 465 ASP D 7 REMARK 465 GLY D 8 REMARK 465 VAL D 9 REMARK 465 ASP D 10 REMARK 465 GLN D 11 REMARK 465 MET D 12 REMARK 465 GLY D 13 REMARK 465 ALA D 14 REMARK 465 GLU D 15 REMARK 465 ARG D 162 REMARK 465 THR D 163 REMARK 465 GLY D 164 REMARK 465 GLU D 165 REMARK 465 ASP D 166 REMARK 465 ASP D 167 REMARK 465 HIS D 168 REMARK 465 HIS D 169 REMARK 465 HIS D 170 REMARK 465 HIS D 171 REMARK 465 HIS D 172 REMARK 465 HIS D 173 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP D 154 O HOH A 309 1545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 36 CZ ARG A 36 NH1 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 96 CG - CD - NE ANGL. DEV. = -18.5 DEGREES REMARK 500 ARG B 96 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG C 36 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 162 149.62 159.78 REMARK 500 GLN C 161 49.88 -92.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2JT B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2JT C 201 DBREF 4NB5 A 4 167 UNP I6Y8F7 I6Y8F7_MYCTU 2 165 DBREF 4NB5 B 4 167 UNP I6Y8F7 I6Y8F7_MYCTU 2 165 DBREF 4NB5 C 4 167 UNP I6Y8F7 I6Y8F7_MYCTU 2 165 DBREF 4NB5 D 4 167 UNP I6Y8F7 I6Y8F7_MYCTU 2 165 SEQADV 4NB5 VAL A 3 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS A 168 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS A 169 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS A 170 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS A 171 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS A 172 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS A 173 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 VAL B 3 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS B 168 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS B 169 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS B 170 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS B 171 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS B 172 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS B 173 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 VAL C 3 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS C 168 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS C 169 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS C 170 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS C 171 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS C 172 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS C 173 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 VAL D 3 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS D 168 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS D 169 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS D 170 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS D 171 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS D 172 UNP I6Y8F7 EXPRESSION TAG SEQADV 4NB5 HIS D 173 UNP I6Y8F7 EXPRESSION TAG SEQRES 1 A 171 VAL SER VAL ASN ASP GLY VAL ASP GLN MET GLY ALA GLU SEQRES 2 A 171 PRO ASP ILE MET GLU PHE VAL GLU GLN MET GLY GLY TYR SEQRES 3 A 171 PHE GLU SER ARG SER LEU THR ARG LEU ALA GLY ARG LEU SEQRES 4 A 171 LEU GLY TRP LEU LEU VAL CYS ASP PRO GLU ARG GLN SER SEQRES 5 A 171 SER GLU GLU LEU ALA THR ALA LEU ALA ALA SER SER GLY SEQRES 6 A 171 GLY ILE SER THR ASN ALA ARG MET LEU ILE GLN PHE GLY SEQRES 7 A 171 PHE ILE GLU ARG LEU ALA VAL ALA GLY ASP ARG ARG THR SEQRES 8 A 171 TYR PHE ARG LEU ARG PRO ASN ALA PHE ALA ALA GLY GLU SEQRES 9 A 171 ARG GLU ARG ILE ARG ALA MET ALA GLU LEU GLN ASP LEU SEQRES 10 A 171 ALA ASP VAL GLY LEU ARG ALA LEU GLY ASP ALA PRO PRO SEQRES 11 A 171 GLN ARG SER ARG ARG LEU ARG GLU MET ARG ASP LEU LEU SEQRES 12 A 171 ALA TYR MET GLU ASN VAL VAL SER ASP ALA LEU GLY ARG SEQRES 13 A 171 TYR SER GLN ARG THR GLY GLU ASP ASP HIS HIS HIS HIS SEQRES 14 A 171 HIS HIS SEQRES 1 B 171 VAL SER VAL ASN ASP GLY VAL ASP GLN MET GLY ALA GLU SEQRES 2 B 171 PRO ASP ILE MET GLU PHE VAL GLU GLN MET GLY GLY TYR SEQRES 3 B 171 PHE GLU SER ARG SER LEU THR ARG LEU ALA GLY ARG LEU SEQRES 4 B 171 LEU GLY TRP LEU LEU VAL CYS ASP PRO GLU ARG GLN SER SEQRES 5 B 171 SER GLU GLU LEU ALA THR ALA LEU ALA ALA SER SER GLY SEQRES 6 B 171 GLY ILE SER THR ASN ALA ARG MET LEU ILE GLN PHE GLY SEQRES 7 B 171 PHE ILE GLU ARG LEU ALA VAL ALA GLY ASP ARG ARG THR SEQRES 8 B 171 TYR PHE ARG LEU ARG PRO ASN ALA PHE ALA ALA GLY GLU SEQRES 9 B 171 ARG GLU ARG ILE ARG ALA MET ALA GLU LEU GLN ASP LEU SEQRES 10 B 171 ALA ASP VAL GLY LEU ARG ALA LEU GLY ASP ALA PRO PRO SEQRES 11 B 171 GLN ARG SER ARG ARG LEU ARG GLU MET ARG ASP LEU LEU SEQRES 12 B 171 ALA TYR MET GLU ASN VAL VAL SER ASP ALA LEU GLY ARG SEQRES 13 B 171 TYR SER GLN ARG THR GLY GLU ASP ASP HIS HIS HIS HIS SEQRES 14 B 171 HIS HIS SEQRES 1 C 171 VAL SER VAL ASN ASP GLY VAL ASP GLN MET GLY ALA GLU SEQRES 2 C 171 PRO ASP ILE MET GLU PHE VAL GLU GLN MET GLY GLY TYR SEQRES 3 C 171 PHE GLU SER ARG SER LEU THR ARG LEU ALA GLY ARG LEU SEQRES 4 C 171 LEU GLY TRP LEU LEU VAL CYS ASP PRO GLU ARG GLN SER SEQRES 5 C 171 SER GLU GLU LEU ALA THR ALA LEU ALA ALA SER SER GLY SEQRES 6 C 171 GLY ILE SER THR ASN ALA ARG MET LEU ILE GLN PHE GLY SEQRES 7 C 171 PHE ILE GLU ARG LEU ALA VAL ALA GLY ASP ARG ARG THR SEQRES 8 C 171 TYR PHE ARG LEU ARG PRO ASN ALA PHE ALA ALA GLY GLU SEQRES 9 C 171 ARG GLU ARG ILE ARG ALA MET ALA GLU LEU GLN ASP LEU SEQRES 10 C 171 ALA ASP VAL GLY LEU ARG ALA LEU GLY ASP ALA PRO PRO SEQRES 11 C 171 GLN ARG SER ARG ARG LEU ARG GLU MET ARG ASP LEU LEU SEQRES 12 C 171 ALA TYR MET GLU ASN VAL VAL SER ASP ALA LEU GLY ARG SEQRES 13 C 171 TYR SER GLN ARG THR GLY GLU ASP ASP HIS HIS HIS HIS SEQRES 14 C 171 HIS HIS SEQRES 1 D 171 VAL SER VAL ASN ASP GLY VAL ASP GLN MET GLY ALA GLU SEQRES 2 D 171 PRO ASP ILE MET GLU PHE VAL GLU GLN MET GLY GLY TYR SEQRES 3 D 171 PHE GLU SER ARG SER LEU THR ARG LEU ALA GLY ARG LEU SEQRES 4 D 171 LEU GLY TRP LEU LEU VAL CYS ASP PRO GLU ARG GLN SER SEQRES 5 D 171 SER GLU GLU LEU ALA THR ALA LEU ALA ALA SER SER GLY SEQRES 6 D 171 GLY ILE SER THR ASN ALA ARG MET LEU ILE GLN PHE GLY SEQRES 7 D 171 PHE ILE GLU ARG LEU ALA VAL ALA GLY ASP ARG ARG THR SEQRES 8 D 171 TYR PHE ARG LEU ARG PRO ASN ALA PHE ALA ALA GLY GLU SEQRES 9 D 171 ARG GLU ARG ILE ARG ALA MET ALA GLU LEU GLN ASP LEU SEQRES 10 D 171 ALA ASP VAL GLY LEU ARG ALA LEU GLY ASP ALA PRO PRO SEQRES 11 D 171 GLN ARG SER ARG ARG LEU ARG GLU MET ARG ASP LEU LEU SEQRES 12 D 171 ALA TYR MET GLU ASN VAL VAL SER ASP ALA LEU GLY ARG SEQRES 13 D 171 TYR SER GLN ARG THR GLY GLU ASP ASP HIS HIS HIS HIS SEQRES 14 D 171 HIS HIS HET 2JT B 201 25 HET 2JT C 201 25 HETNAM 2JT 1,3-DIHYDROXYPROPAN-2-YL OCTADECANOATE HETSYN 2JT 2-STEAROYLGLYCEROL; 2-MONOSTEARIN FORMUL 5 2JT 2(C21 H42 O4) FORMUL 7 HOH *581(H2 O) HELIX 1 1 ASP A 17 ARG A 32 1 16 HELIX 2 2 THR A 35 CYS A 48 1 14 HELIX 3 3 SER A 55 ALA A 63 1 9 HELIX 4 4 SER A 65 PHE A 79 1 15 HELIX 5 5 ASN A 100 LEU A 127 1 28 HELIX 6 6 PRO A 131 ARG A 134 5 4 HELIX 7 7 SER A 135 GLN A 161 1 27 HELIX 8 8 ASP B 17 SER B 31 1 15 HELIX 9 9 THR B 35 CYS B 48 1 14 HELIX 10 10 SER B 55 LEU B 62 1 8 HELIX 11 11 SER B 65 PHE B 79 1 15 HELIX 12 12 ASN B 100 LEU B 127 1 28 HELIX 13 13 PRO B 131 ARG B 134 5 4 HELIX 14 14 SER B 135 ARG B 162 1 28 HELIX 15 15 ASP C 17 ARG C 32 1 16 HELIX 16 16 THR C 35 CYS C 48 1 14 HELIX 17 17 SER C 55 ALA C 63 1 9 HELIX 18 18 SER C 65 PHE C 79 1 15 HELIX 19 19 ASN C 100 LEU C 127 1 28 HELIX 20 20 PRO C 131 ARG C 134 5 4 HELIX 21 21 SER C 135 GLN C 161 1 27 HELIX 22 22 ASP D 17 SER D 31 1 15 HELIX 23 23 THR D 35 CYS D 48 1 14 HELIX 24 24 SER D 55 ALA D 63 1 9 HELIX 25 25 SER D 65 PHE D 79 1 15 HELIX 26 26 ASN D 100 LEU D 127 1 28 HELIX 27 27 PRO D 131 ARG D 134 5 4 HELIX 28 28 SER D 135 SER D 160 1 26 SHEET 1 A 3 GLN A 53 SER A 54 0 SHEET 2 A 3 TYR A 94 LEU A 97 -1 O PHE A 95 N GLN A 53 SHEET 3 A 3 ILE A 82 LEU A 85 -1 N LEU A 85 O TYR A 94 SHEET 1 B 3 GLN B 53 SER B 54 0 SHEET 2 B 3 TYR B 94 LEU B 97 -1 O PHE B 95 N GLN B 53 SHEET 3 B 3 ILE B 82 LEU B 85 -1 N LEU B 85 O TYR B 94 SHEET 1 C 3 GLN C 53 SER C 54 0 SHEET 2 C 3 TYR C 94 LEU C 97 -1 O PHE C 95 N GLN C 53 SHEET 3 C 3 ILE C 82 LEU C 85 -1 N LEU C 85 O TYR C 94 SHEET 1 D 3 GLN D 53 SER D 54 0 SHEET 2 D 3 TYR D 94 LEU D 97 -1 O PHE D 95 N GLN D 53 SHEET 3 D 3 ILE D 82 LEU D 85 -1 N GLU D 83 O ARG D 96 CISPEP 1 ASP A 49 PRO A 50 0 -2.63 CISPEP 2 ASP B 49 PRO B 50 0 1.46 CISPEP 3 ASP C 49 PRO C 50 0 -1.52 CISPEP 4 ASP D 49 PRO D 50 0 -1.65 SITE 1 AC1 15 ARG A 32 GLU A 108 ARG A 109 ARG A 111 SITE 2 AC1 15 ALA A 112 GLU A 115 HOH A 266 ARG B 32 SITE 3 AC1 15 PHE B 79 PHE B 81 GLY B 105 GLU B 106 SITE 4 AC1 15 GLU B 108 ARG B 109 HOH B 310 SITE 1 AC2 13 ARG C 32 LEU C 34 PHE C 81 PHE C 102 SITE 2 AC2 13 GLY C 105 GLU C 106 ARG C 109 GLU D 108 SITE 3 AC2 13 ARG D 109 ARG D 111 ALA D 112 GLU D 115 SITE 4 AC2 13 LEU D 116 CRYST1 54.539 57.245 61.441 82.24 68.40 72.20 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018336 -0.005885 -0.007113 0.00000 SCALE2 0.000000 0.018347 -0.000466 0.00000 SCALE3 0.000000 0.000000 0.017511 0.00000