HEADER OXIDOREDUCTASE 23-OCT-13 4NB7
TITLE CRYSTAL STRUCTURE OF TWO-DOMAIN LACCASE FROM STREPTOMYCES LIVIDANS
TITLE 2 AC1709 IN COMPLEX WITH AZIDE AFTER 180 MIN SOAKING
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: COPPER OXIDASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: LACCASE;
COMPND 5 EC: 1.10.3.2;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LIVIDANS;
SOURCE 3 ORGANISM_TAXID: 457428;
SOURCE 4 STRAIN: TK24;
SOURCE 5 GENE: SSPG_00990;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30
KEYWDS MULTICOPPER BLUE PROTEIN, TWO-DOMAIN LACCASE, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.GABDULKHAKOV,S.TISCHENKO,L.YUREVICH,A.LISOV,A.LEONTIEVSKY
REVDAT 3 08-NOV-23 4NB7 1 REMARK HETSYN LINK
REVDAT 2 15-NOV-17 4NB7 1 REMARK
REVDAT 1 29-OCT-14 4NB7 0
JRNL AUTH A.GABDULKHAKOV,S.TISCHENKO,L.YUREVICH,A.LISOV,A.LEONTIEVSKY
JRNL TITL CRYSTAL STRUCTURE OF TWO-DOMAIN LACCASE FROM STREPTOMYCES
JRNL TITL 2 LIVIDANS AC1709 IN COMPLEX WITH AZIDE AFTER 180 MIN SOAKING
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.55 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.38
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 3 NUMBER OF REFLECTIONS : 31553
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.162
REMARK 3 R VALUE (WORKING SET) : 0.161
REMARK 3 FREE R VALUE : 0.181
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1578
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 44.3842 - 5.6680 0.99 2959 156 0.1506 0.1664
REMARK 3 2 5.6680 - 4.5003 1.00 2800 147 0.1108 0.1308
REMARK 3 3 4.5003 - 3.9318 1.00 2759 145 0.1142 0.1226
REMARK 3 4 3.9318 - 3.5725 1.00 2729 144 0.1402 0.1568
REMARK 3 5 3.5725 - 3.3165 1.00 2725 143 0.1642 0.2033
REMARK 3 6 3.3165 - 3.1210 1.00 2716 143 0.1969 0.2390
REMARK 3 7 3.1210 - 2.9648 1.00 2681 141 0.2030 0.2394
REMARK 3 8 2.9648 - 2.8357 1.00 2709 143 0.2305 0.2643
REMARK 3 9 2.8357 - 2.7266 1.00 2677 141 0.2810 0.3012
REMARK 3 10 2.7266 - 2.6325 1.00 2668 140 0.2854 0.3294
REMARK 3 11 2.6325 - 2.5502 0.95 2552 135 0.3325 0.2929
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.970
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 58.35
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.59
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.009 2353
REMARK 3 ANGLE : 1.237 3135
REMARK 3 CHIRALITY : 0.046 311
REMARK 3 PLANARITY : 0.006 400
REMARK 3 DIHEDRAL : 17.391 893
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4NB7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-13.
REMARK 100 THE DEPOSITION ID IS D_1000082982.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 08-DEC-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 9.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : BESSY
REMARK 200 BEAMLINE : 14.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841
REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31563
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70
REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4GYB
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 80.51
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.31
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 31%(V/V) PEG MONOMETHYL ETHER 550,
REMARK 280 0.1M NACL, 0.1M GLYCINE, PH 9.0, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 296K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290 5555 Z,X,Y
REMARK 290 6555 Z+1/2,-X+1/2,-Y
REMARK 290 7555 -Z+1/2,-X,Y+1/2
REMARK 290 8555 -Z,X+1/2,-Y+1/2
REMARK 290 9555 Y,Z,X
REMARK 290 10555 -Y,Z+1/2,-X+1/2
REMARK 290 11555 Y+1/2,-Z+1/2,-X
REMARK 290 12555 -Y+1/2,-Z,X+1/2
REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4
REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4
REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4
REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4
REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4
REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4
REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4
REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4
REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4
REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4
REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4
REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 88.75500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.75500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 88.75500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.75500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 88.75500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 88.75500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 88.75500
REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 88.75500
REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 88.75500
REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 88.75500
REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 88.75500
REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 88.75500
REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 88.75500
REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 88.75500
REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 88.75500
REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 88.75500
REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 88.75500
REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 88.75500
REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 44.37750
REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 133.13250
REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 133.13250
REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 44.37750
REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 44.37750
REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 44.37750
REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 133.13250
REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 133.13250
REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 44.37750
REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 133.13250
REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 44.37750
REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 133.13250
REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 44.37750
REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 133.13250
REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 133.13250
REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 133.13250
REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 44.37750
REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 133.13250
REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 44.37750
REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 44.37750
REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 44.37750
REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 133.13250
REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 133.13250
REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 44.37750
REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 44.37750
REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 133.13250
REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 133.13250
REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 133.13250
REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 133.13250
REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 44.37750
REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 133.13250
REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 44.37750
REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 133.13250
REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 44.37750
REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 44.37750
REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 44.37750
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 23590 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 31260 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 578 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ASP A 2
REMARK 465 ARG A 3
REMARK 465 ARG A 4
REMARK 465 GLY A 5
REMARK 465 PHE A 6
REMARK 465 ASN A 7
REMARK 465 ARG A 8
REMARK 465 ARG A 9
REMARK 465 VAL A 10
REMARK 465 LEU A 11
REMARK 465 LEU A 12
REMARK 465 GLY A 13
REMARK 465 GLY A 14
REMARK 465 ALA A 15
REMARK 465 ALA A 16
REMARK 465 ALA A 17
REMARK 465 ALA A 18
REMARK 465 THR A 19
REMARK 465 SER A 20
REMARK 465 LEU A 21
REMARK 465 SER A 22
REMARK 465 ILE A 23
REMARK 465 ALA A 24
REMARK 465 PRO A 25
REMARK 465 GLU A 26
REMARK 465 VAL A 27
REMARK 465 ALA A 28
REMARK 465 GLY A 29
REMARK 465 ALA A 30
REMARK 465 ALA A 31
REMARK 465 PRO A 32
REMARK 465 ALA A 33
REMARK 465 ALA A 34
REMARK 465 LYS A 35
REMARK 465 PRO A 316
REMARK 465 HIS A 317
REMARK 465 GLU A 318
REMARK 465 HIS A 319
REMARK 465 GLY A 320
REMARK 465 GLY A 321
REMARK 465 ALA A 322
REMARK 465 THR A 323
REMARK 465 ALA A 324
REMARK 465 LYS A 325
REMARK 465 SER A 326
REMARK 465 GLY A 327
REMARK 465 GLU A 328
REMARK 465 SER A 329
REMARK 465 GLY A 330
REMARK 465 GLU A 331
REMARK 465 PRO A 332
REMARK 465 THR A 333
REMARK 465 GLY A 334
REMARK 465 GLY A 335
REMARK 465 ALA A 336
REMARK 465 ALA A 337
REMARK 465 ALA A 338
REMARK 465 HIS A 339
REMARK 465 GLU A 340
REMARK 465 HIS A 341
REMARK 465 GLU A 342
REMARK 465 HIS A 343
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ILE A 37 15.89 -145.35
REMARK 500 THR A 38 -21.80 -160.00
REMARK 500 ASP A 197 -120.98 46.89
REMARK 500 MET A 198 30.08 -99.83
REMARK 500 ASN A 243 -159.63 -137.93
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU A 401 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 231 ND1
REMARK 620 2 CYS A 288 SG 132.5
REMARK 620 3 HIS A 293 ND1 107.6 118.0
REMARK 620 N 1 2
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU A 403 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 236 NE2
REMARK 620 2 HIS A 287 NE2 109.6
REMARK 620 N 1
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CU A 402 CU
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 289 NE2
REMARK 620 2 HOH A 531 O 77.7
REMARK 620 N 1
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 404
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 405
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 406
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 407
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 408
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 409
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 410
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 411
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 412
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 413
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 414
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 7PE A 416
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 417
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 418
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4GYB RELATED DB: PDB
REMARK 900 TWO-DOMAIN LACCASE FROM STREPTOMYCES LIVIDANS AT 2.4 A RESOLUTION
REMARK 900 AC1709
REMARK 900 RELATED ID: 4NAJ RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF TWO-DOMAIN LACCASE FROM STREPTOMYCES LIVIDANS
REMARK 900 AC1709 IN COMPLEX WITH AZIDE AFTER 90 MIN SOAKING
DBREF 4NB7 A 1 343 UNP D6EFA0 D6EFA0_STRLI 1 343
SEQRES 1 A 343 MET ASP ARG ARG GLY PHE ASN ARG ARG VAL LEU LEU GLY
SEQRES 2 A 343 GLY ALA ALA ALA ALA THR SER LEU SER ILE ALA PRO GLU
SEQRES 3 A 343 VAL ALA GLY ALA ALA PRO ALA ALA LYS GLY ILE THR ALA
SEQRES 4 A 343 ARG THR ALA PRO ALA GLY GLY GLU VAL ARG HIS LEU LYS
SEQRES 5 A 343 MET TYR ALA GLU LYS LEU ALA ASP GLY GLN MET GLY TYR
SEQRES 6 A 343 GLY PHE GLU LYS GLY LYS ALA SER VAL PRO GLY PRO LEU
SEQRES 7 A 343 ILE GLU VAL ASN GLU GLY ASP THR LEU HIS ILE GLU PHE
SEQRES 8 A 343 THR ASN THR MET ASP VAL ARG ALA SER LEU HIS VAL HIS
SEQRES 9 A 343 GLY LEU ASP TYR GLU ILE SER SER ASP GLY THR ALA MET
SEQRES 10 A 343 ASN LYS SER ASP VAL GLU PRO GLY GLY THR ARG THR TYR
SEQRES 11 A 343 THR TRP ARG THR HIS LYS PRO GLY ARG ARG ASP ASP GLY
SEQRES 12 A 343 THR TRP ARG PRO GLY SER ALA GLY TYR TRP HIS TYR HIS
SEQRES 13 A 343 ASP HIS VAL VAL GLY THR GLU HIS GLY THR GLY GLY ILE
SEQRES 14 A 343 ARG ASN GLY LEU TYR GLY PRO VAL ILE VAL ARG ARG LYS
SEQRES 15 A 343 GLY ASP VAL LEU PRO ASP ALA THR HIS THR ILE VAL PHE
SEQRES 16 A 343 ASN ASP MET THR ILE ASN ASN ARG LYS PRO HIS THR GLY
SEQRES 17 A 343 PRO ASP PHE GLU ALA THR VAL GLY ASP ARG VAL GLU ILE
SEQRES 18 A 343 VAL MET ILE THR HIS GLY GLU TYR TYR HIS THR PHE HIS
SEQRES 19 A 343 MET HIS GLY HIS ARG TRP ALA ASP ASN ARG THR GLY ILE
SEQRES 20 A 343 LEU THR GLY PRO ASP ASP PRO SER ARG VAL ILE ASP ASN
SEQRES 21 A 343 LYS ILE THR GLY PRO ALA ASP SER PHE GLY PHE GLN ILE
SEQRES 22 A 343 ILE ALA GLY GLU GLY VAL GLY ALA GLY ALA TRP MET TYR
SEQRES 23 A 343 HIS CYS HIS VAL GLN SER HIS SER ASP MET GLY MET VAL
SEQRES 24 A 343 GLY LEU PHE LEU VAL LYS LYS PRO ASP GLY THR ILE PRO
SEQRES 25 A 343 GLY TYR GLU PRO HIS GLU HIS GLY GLY ALA THR ALA LYS
SEQRES 26 A 343 SER GLY GLU SER GLY GLU PRO THR GLY GLY ALA ALA ALA
SEQRES 27 A 343 HIS GLU HIS GLU HIS
HET CU A 401 1
HET CU A 402 1
HET CU A 403 1
HET CU A 404 1
HET AZI A 405 3
HET AZI A 406 3
HET AZI A 407 3
HET AZI A 408 3
HET AZI A 409 3
HET AZI A 410 3
HET PG4 A 411 13
HET PE5 A 412 27
HET P6G A 413 19
HET GOL A 414 6
HET GOL A 415 6
HET 7PE A 416 21
HET 1PE A 417 16
HET 1PE A 418 16
HETNAM CU COPPER (II) ION
HETNAM AZI AZIDE ION
HETNAM PG4 TETRAETHYLENE GLYCOL
HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
HETNAM P6G HEXAETHYLENE GLYCOL
HETNAM GOL GLYCEROL
HETNAM 7PE 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)
HETNAM 2 7PE ETHOXY)ETHANOL
HETNAM 1PE PENTAETHYLENE GLYCOL
HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-
HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE
HETSYN 3 PE5 GLYCOL PEG400
HETSYN P6G POLYETHYLENE GLYCOL PEG400
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
HETSYN 7PE POLYETHYLENE GLYCOL FRAGMENT
HETSYN 1PE PEG400
FORMUL 2 CU 4(CU 2+)
FORMUL 6 AZI 6(N3 1-)
FORMUL 12 PG4 C8 H18 O5
FORMUL 13 PE5 C18 H38 O9
FORMUL 14 P6G C12 H26 O7
FORMUL 15 GOL 2(C3 H8 O3)
FORMUL 17 7PE C14 H30 O7
FORMUL 18 1PE 2(C10 H22 O6)
FORMUL 20 HOH *88(H2 O)
HELIX 1 1 GLU A 109 ASP A 113 5 5
HELIX 2 2 GLY A 165 GLY A 172 1 8
HELIX 3 3 VAL A 290 MET A 296 1 7
SHEET 1 A 4 MET A 63 GLY A 66 0
SHEET 2 A 4 VAL A 48 LYS A 57 -1 N TYR A 54 O GLY A 66
SHEET 3 A 4 THR A 86 ASN A 93 1 O THR A 86 N ARG A 49
SHEET 4 A 4 THR A 127 ARG A 133 -1 O ARG A 128 N PHE A 91
SHEET 1 B 4 ILE A 79 ASN A 82 0
SHEET 2 B 4 TYR A 174 ARG A 180 1 O ILE A 178 N ILE A 79
SHEET 3 B 4 GLY A 151 HIS A 156 -1 N TRP A 153 O VAL A 177
SHEET 4 B 4 HIS A 102 VAL A 103 -1 N HIS A 102 O HIS A 156
SHEET 1 C 2 GLY A 138 ARG A 139 0
SHEET 2 C 2 TRP A 145 ARG A 146 -1 O ARG A 146 N GLY A 138
SHEET 1 D 4 THR A 199 ILE A 200 0
SHEET 2 D 4 ALA A 189 ASN A 196 -1 N ASN A 196 O THR A 199
SHEET 3 D 4 ARG A 218 HIS A 226 1 O GLU A 220 N ALA A 189
SHEET 4 D 4 SER A 268 ILE A 274 -1 O PHE A 269 N MET A 223
SHEET 1 E 5 ASP A 210 THR A 214 0
SHEET 2 E 5 VAL A 299 LYS A 305 1 O LEU A 303 N PHE A 211
SHEET 3 E 5 GLY A 282 CYS A 288 -1 N TRP A 284 O PHE A 302
SHEET 4 E 5 HIS A 231 MET A 235 -1 N HIS A 234 O HIS A 287
SHEET 5 E 5 ASN A 260 THR A 263 -1 O THR A 263 N HIS A 231
SHEET 1 F 2 TRP A 240 ALA A 241 0
SHEET 2 F 2 VAL A 257 ILE A 258 -1 O ILE A 258 N TRP A 240
LINK ND1 HIS A 231 CU CU A 401 1555 1555 2.06
LINK NE2 HIS A 234 CU CU A 404 1555 1555 1.99
LINK NE2 HIS A 236 CU CU A 403 1555 1555 2.09
LINK NE2 HIS A 287 CU CU A 403 1555 1555 2.27
LINK SG CYS A 288 CU CU A 401 1555 1555 2.14
LINK NE2 HIS A 289 CU CU A 402 1555 1555 2.08
LINK ND1 HIS A 293 CU CU A 401 1555 1555 1.93
LINK CU CU A 402 O HOH A 531 1555 1555 2.62
CISPEP 1 GLY A 45 GLY A 46 0 4.02
CISPEP 2 VAL A 74 PRO A 75 0 -1.48
CISPEP 3 GLY A 208 PRO A 209 0 5.23
SITE 1 AC1 4 HIS A 231 CYS A 288 HIS A 293 MET A 298
SITE 1 AC2 4 HIS A 104 HIS A 156 HIS A 289 HOH A 531
SITE 1 AC3 4 HIS A 158 HIS A 236 HIS A 287 HOH A 531
SITE 1 AC4 5 HIS A 102 HIS A 234 HIS A 236 AZI A 409
SITE 2 AC4 5 HOH A 531
SITE 1 AC5 3 TYR A 229 TYR A 230 HIS A 293
SITE 1 AC6 7 LYS A 69 GLY A 70 HIS A 191 GLU A 212
SITE 2 AC6 7 ALA A 213 ASP A 217 VAL A 219
SITE 1 AC7 8 TRP A 240 ALA A 241 ASP A 242 ASN A 243
SITE 2 AC7 8 ARG A 256 LYS A 261 PHE A 269 GLY A 270
SITE 1 AC8 7 GLY A 148 ALA A 150 ARG A 181 ARG A 244
SITE 2 AC8 7 VAL A 257 HOH A 517 HOH A 550
SITE 1 AC9 11 HIS A 102 VAL A 103 TYR A 108 HIS A 234
SITE 2 AC9 11 MET A 235 HIS A 236 GLY A 237 HIS A 238
SITE 3 AC9 11 ASP A 259 CU A 404 HOH A 540
SITE 1 BC1 4 HIS A 50 LYS A 52 GLU A 90 HOH A 588
SITE 1 BC2 3 GLU A 109 ARG A 133 GLY A 278
SITE 1 BC3 4 ARG A 49 GLU A 68 LEU A 78 GLU A 80
SITE 1 BC4 7 ARG A 40 LYS A 69 PRO A 187 ASP A 188
SITE 2 BC4 7 VAL A 215 GLY A 216 ASP A 217
SITE 1 BC5 1 GLU A 47
SITE 1 BC6 8 ASP A 60 ARG A 170 ASN A 171 ASP A 197
SITE 2 BC6 8 ASN A 202 LYS A 204 1PE A 417 HOH A 546
SITE 1 BC7 7 GLN A 62 SER A 73 VAL A 74 PRO A 75
SITE 2 BC7 7 ASN A 202 7PE A 416 HOH A 523
SITE 1 BC8 3 LYS A 136 ARG A 139 ARG A 146
CRYST1 177.510 177.510 177.510 90.00 90.00 90.00 P 43 3 2 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005633 0.000000 0.000000 0.00000
SCALE2 0.000000 0.005633 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005633 0.00000