HEADER HYDROLASE ACTIVATOR 24-OCT-13 4NC6 TITLE TBC DOMAIN OF HUMAN RAB GTPASE-ACTIVATING PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAB GTPASE-ACTIVATING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TBC DOMAIN, RESIDUES 536-849; COMPND 5 SYNONYM: GAP AND CENTROSOME-ASSOCIATED PROTEIN, RAB6 GTPASE- COMPND 6 ACTIVATING PROTEIN GAPCENA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RABGAP1, HSPC094; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPINJ KEYWDS TBC DOMAIN, GTPASE ACTIVATION, HYDROLASE ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR R.JANOWSKI,M.BOUTIN,M.COLL REVDAT 2 20-SEP-23 4NC6 1 REMARK REVDAT 1 19-AUG-15 4NC6 0 JRNL AUTH R.JANOWSKI,M.BOUTIN,M.COLL JRNL TITL TBC DOMAIN OF HUMAN RAB GTPASE-ACTIVATING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 26432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1402 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1760 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2407 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : 0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.340 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2624 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2535 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3567 ; 1.811 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5861 ; 0.955 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 5.407 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;39.495 ;24.104 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 501 ;14.706 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;25.561 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2984 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 647 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 539 A 581 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0863 19.4727 2.8998 REMARK 3 T TENSOR REMARK 3 T11: 0.0805 T22: 0.0569 REMARK 3 T33: 0.0716 T12: 0.0343 REMARK 3 T13: 0.0476 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 2.2349 L22: 1.4404 REMARK 3 L33: 4.1758 L12: 1.2047 REMARK 3 L13: -2.1624 L23: -2.2020 REMARK 3 S TENSOR REMARK 3 S11: 0.2309 S12: 0.3416 S13: 0.2502 REMARK 3 S21: 0.2478 S22: 0.1504 S23: 0.1908 REMARK 3 S31: -0.4399 S32: -0.2908 S33: -0.3813 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 582 A 703 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8865 -2.3826 11.2910 REMARK 3 T TENSOR REMARK 3 T11: 0.0226 T22: 0.0085 REMARK 3 T33: 0.0225 T12: 0.0016 REMARK 3 T13: -0.0037 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.0313 L22: 0.4894 REMARK 3 L33: 0.7053 L12: 0.0004 REMARK 3 L13: 0.2320 L23: -0.0925 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: 0.0432 S13: -0.1181 REMARK 3 S21: -0.0489 S22: 0.0078 S23: 0.0165 REMARK 3 S31: 0.0602 S32: -0.0012 S33: -0.0640 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 704 A 829 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7960 11.1938 27.2531 REMARK 3 T TENSOR REMARK 3 T11: 0.0586 T22: 0.0210 REMARK 3 T33: 0.0184 T12: -0.0187 REMARK 3 T13: -0.0036 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.2053 L22: 0.5154 REMARK 3 L33: 1.6376 L12: -0.0402 REMARK 3 L13: -0.0605 L23: 0.2455 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0330 S13: 0.0029 REMARK 3 S21: 0.0658 S22: 0.0240 S23: -0.0271 REMARK 3 S31: -0.0432 S32: -0.0210 S33: -0.0249 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3HZJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27%(W/V) PEG2000 MME, 100MM NA ACETATE REMARK 280 , PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.57500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.11000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.69500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.11000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.57500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.69500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 536 REMARK 465 ILE A 537 REMARK 465 LEU A 538 REMARK 465 GLN A 830 REMARK 465 GLN A 831 REMARK 465 GLU A 832 REMARK 465 ASP A 833 REMARK 465 PRO A 834 REMARK 465 ILE A 835 REMARK 465 GLU A 836 REMARK 465 ARG A 837 REMARK 465 PHE A 838 REMARK 465 GLU A 839 REMARK 465 ARG A 840 REMARK 465 GLU A 841 REMARK 465 ASN A 842 REMARK 465 ARG A 843 REMARK 465 ARG A 844 REMARK 465 LEU A 845 REMARK 465 GLN A 846 REMARK 465 GLU A 847 REMARK 465 ALA A 848 REMARK 465 ASN A 849 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 612 O HOH A 1127 2.03 REMARK 500 O HOH A 1149 O HOH A 1201 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 572 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 622 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 708 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 551 85.84 -156.11 REMARK 500 PHE A 614 49.25 36.92 REMARK 500 PHE A 732 -2.16 70.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 539 THR A 540 132.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 902 DBREF 4NC6 A 536 849 UNP Q9Y3P9 RBGP1_HUMAN 536 849 SEQRES 1 A 314 LYS ILE LEU GLU THR TRP GLY GLU LEU LEU SER LYS TRP SEQRES 2 A 314 HIS LEU ASN LEU ASN VAL ARG PRO LYS GLN LEU SER SER SEQRES 3 A 314 LEU VAL ARG ASN GLY VAL PRO GLU ALA LEU ARG GLY GLU SEQRES 4 A 314 VAL TRP GLN LEU LEU ALA GLY CYS HIS ASN ASN ASP HIS SEQRES 5 A 314 LEU VAL GLU LYS TYR ARG ILE LEU ILE THR LYS GLU SER SEQRES 6 A 314 PRO GLN ASP SER ALA ILE THR ARG ASP ILE ASN ARG THR SEQRES 7 A 314 PHE PRO ALA HIS ASP TYR PHE LYS ASP THR GLY GLY ASP SEQRES 8 A 314 GLY GLN ASP SER LEU TYR LYS ILE CYS LYS ALA TYR SER SEQRES 9 A 314 VAL TYR ASP GLU GLU ILE GLY TYR CYS GLN GLY GLN SER SEQRES 10 A 314 PHE LEU ALA ALA VAL LEU LEU LEU HIS MET PRO GLU GLU SEQRES 11 A 314 GLN ALA PHE SER VAL LEU VAL LYS ILE MET PHE ASP TYR SEQRES 12 A 314 GLY LEU ARG GLU LEU PHE LYS GLN ASN PHE GLU ASP LEU SEQRES 13 A 314 HIS CYS LYS PHE TYR GLN LEU GLU ARG LEU MET GLN GLU SEQRES 14 A 314 TYR ILE PRO ASP LEU TYR ASN HIS PHE LEU ASP ILE SER SEQRES 15 A 314 LEU GLU ALA HIS MET TYR ALA SER GLN TRP PHE LEU THR SEQRES 16 A 314 LEU PHE THR ALA LYS PHE PRO LEU TYR MET VAL PHE HIS SEQRES 17 A 314 ILE ILE ASP LEU LEU LEU CYS GLU GLY ILE SER VAL ILE SEQRES 18 A 314 PHE ASN VAL ALA LEU GLY LEU LEU LYS THR SER LYS ASP SEQRES 19 A 314 ASP LEU LEU LEU THR ASP PHE GLU GLY ALA LEU LYS PHE SEQRES 20 A 314 PHE ARG VAL GLN LEU PRO LYS ARG TYR ARG SER GLU GLU SEQRES 21 A 314 ASN ALA LYS LYS LEU MET GLU LEU ALA CYS ASN MET LYS SEQRES 22 A 314 ILE SER GLN LYS LYS LEU LYS LYS TYR GLU LYS GLU TYR SEQRES 23 A 314 HIS THR MET ARG GLU GLN GLN ALA GLN GLN GLU ASP PRO SEQRES 24 A 314 ILE GLU ARG PHE GLU ARG GLU ASN ARG ARG LEU GLN GLU SEQRES 25 A 314 ALA ASN HET ACT A 901 4 HET CL A 902 1 HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 CL CL 1- FORMUL 4 HOH *294(H2 O) HELIX 1 1 GLU A 539 LEU A 550 1 12 HELIX 2 2 GLN A 558 ASN A 565 1 8 HELIX 3 3 PRO A 568 ALA A 570 5 3 HELIX 4 4 LEU A 571 GLY A 581 1 11 HELIX 5 5 ASN A 585 ILE A 596 1 12 HELIX 6 6 GLN A 602 ARG A 612 1 11 HELIX 7 7 GLY A 625 ASP A 642 1 18 HELIX 8 8 GLY A 650 LEU A 660 1 11 HELIX 9 9 PRO A 663 PHE A 676 1 14 HELIX 10 10 GLY A 679 ASN A 687 5 9 HELIX 11 11 PHE A 688 ILE A 706 1 19 HELIX 12 12 ILE A 706 ILE A 716 1 11 HELIX 13 13 GLU A 719 TYR A 723 5 5 HELIX 14 14 ALA A 724 LEU A 731 1 8 HELIX 15 15 PRO A 737 GLY A 752 1 16 HELIX 16 16 SER A 754 SER A 767 1 14 HELIX 17 17 LYS A 768 LEU A 771 5 4 HELIX 18 18 ASP A 775 VAL A 785 1 11 HELIX 19 19 VAL A 785 TYR A 791 1 7 HELIX 20 20 SER A 793 MET A 807 1 15 HELIX 21 21 SER A 810 ALA A 829 1 20 SITE 1 AC1 6 HIS A 617 HIS A 822 GLU A 826 HOH A1114 SITE 2 AC1 6 HOH A1120 HOH A1142 SITE 1 AC2 1 SER A 810 CRYST1 43.150 51.390 132.220 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023175 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007563 0.00000