HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 24-OCT-13 4NCE TITLE INFLUENZA POLYMERASE BASIC PROTEIN 2 (PB2) BOUND TO 7-METHYL-GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE BASIC PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CAP-BINDING DOMAIN; COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 392809; SOURCE 4 STRAIN: STRAIN A/VICTORIA/3/1975 H3N2; SOURCE 5 GENE: PB2, POLYMERASE BASIC PROTEIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS INFLUENZA VIRUS, CAP-BINDING DOMAIN, TRANSCRIPTION-TRANSCRIPTION KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.D.JACOBS REVDAT 4 20-SEP-23 4NCE 1 REMARK SEQADV REVDAT 3 27-AUG-14 4NCE 1 JRNL REVDAT 2 06-AUG-14 4NCE 1 JRNL REVDAT 1 30-JUL-14 4NCE 0 JRNL AUTH M.P.CLARK,M.W.LEDEBOER,I.DAVIES,R.A.BYRN,S.M.JONES,E.PEROLA, JRNL AUTH 2 A.TSAI,M.JACOBS,K.NTI-ADDAE,U.K.BANDARAGE,M.J.BOYD, JRNL AUTH 3 R.S.BETHIEL,J.J.COURT,H.DENG,J.P.DUFFY,W.A.DORSCH, JRNL AUTH 4 L.J.FARMER,H.GAO,W.GU,K.JACKSON,D.H.JACOBS,J.M.KENNEDY, JRNL AUTH 5 B.LEDFORD,J.LIANG,F.MALTAIS,M.MURCKO,T.WANG,M.W.WANNAMAKER, JRNL AUTH 6 H.B.BENNETT,J.R.LEEMAN,C.MCNEIL,W.P.TAYLOR,C.MEMMOTT, JRNL AUTH 7 M.JIANG,R.RIJNBRAND,C.BRAL,U.GERMANN,A.NEZAMI,Y.ZHANG, JRNL AUTH 8 F.G.SALITURO,Y.L.BENNANI,P.S.CHARIFSON JRNL TITL DISCOVERY OF A NOVEL, FIRST-IN-CLASS, ORALLY BIOAVAILABLE JRNL TITL 2 AZAINDOLE INHIBITOR (VX-787) OF INFLUENZA PB2. JRNL REF J.MED.CHEM. V. 57 6668 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25019388 JRNL DOI 10.1021/JM5007275 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 442 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 644 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -1.27000 REMARK 3 B12 (A**2) : 0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.310 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.390 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1421 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1930 ; 1.386 ; 2.023 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 167 ; 6.455 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;36.349 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 262 ;18.258 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.365 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 206 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1071 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 817 ; 0.444 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1321 ; 0.893 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 604 ; 1.596 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 607 ; 2.620 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 416 REMARK 3 RESIDUE RANGE : A 502 A 502 REMARK 3 ORIGIN FOR THE GROUP (A): -41.3469 -2.0196 2.0527 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.0391 REMARK 3 T33: 0.0190 T12: 0.0022 REMARK 3 T13: 0.0114 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.7742 L22: 2.2721 REMARK 3 L33: 0.8735 L12: -0.0601 REMARK 3 L13: 0.2290 L23: 0.4193 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: 0.0366 S13: -0.0838 REMARK 3 S21: -0.0202 S22: -0.0280 S23: 0.2357 REMARK 3 S31: 0.0520 S32: -0.1488 S33: 0.0317 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 417 A 483 REMARK 3 ORIGIN FOR THE GROUP (A): -32.3094 1.1409 5.2695 REMARK 3 T TENSOR REMARK 3 T11: 0.0408 T22: 0.0511 REMARK 3 T33: 0.0392 T12: 0.0074 REMARK 3 T13: -0.0066 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 1.5276 L22: 5.8249 REMARK 3 L33: 2.2642 L12: 0.6595 REMARK 3 L13: -0.4394 L23: -1.4337 REMARK 3 S TENSOR REMARK 3 S11: -0.0713 S12: 0.0297 S13: 0.0922 REMARK 3 S21: -0.0791 S22: 0.0099 S23: -0.3705 REMARK 3 S31: -0.0975 S32: 0.0517 S33: 0.0614 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9272 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.450 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VQZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7 UL OF PROTEIN SOLUTION (9.7 MG/ML REMARK 280 PROTEIN, 50 MM TRIS BUFFER PH 8, 200 MM SODIUM CHLORIDE, 2 MM REMARK 280 DITHIOTHREITOL, 5 MM M7GTP) WAS MIXED WITH 0.35 UL HAMPTON REMARK 280 RESEARCH SILVER BULLET SCREENING REAGENT #36. THIS MIXTURE WAS REMARK 280 COMBINED WITH 0.35 UL OF WELL SOLUTION (APPROXIMATELY 1.3 M REMARK 280 SODIUM FORMATE, 100 MM SODIUM CITRATE BUFFER PH 4.6, 5 MM REMARK 280 DITHIOTHREITOL) AND SUSPENDED OVER 1 ML OF WELL SOLUTION, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 4.7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.37333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.18667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.28000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 9.09333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 315 REMARK 465 HIS A 316 REMARK 465 MET A 317 REMARK 465 ARG A 318 REMARK 465 ILE A 319 REMARK 465 SER A 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 342 NH2 ARG A 369 4454 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 390 -178.03 -172.46 REMARK 500 ASP A 441 116.07 -164.13 REMARK 500 ASN A 456 25.83 -76.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 11H A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 11H A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NCM RELATED DB: PDB DBREF 4NCE A 317 483 UNP P31345 PB2_I75A3 317 483 SEQADV 4NCE GLY A 315 UNP P31345 EXPRESSION TAG SEQADV 4NCE HIS A 316 UNP P31345 EXPRESSION TAG SEQADV 4NCE MET A 317 UNP P31345 LEU 317 CONFLICT SEQADV 4NCE LYS A 389 UNP P31345 ARG 389 CONFLICT SEQRES 1 A 169 GLY HIS MET ARG ILE SER SER SER PHE SER PHE GLY GLY SEQRES 2 A 169 PHE THR PHE LYS ARG THR SER GLY SER SER ILE LYS ARG SEQRES 3 A 169 GLU GLU GLU VAL LEU THR GLY ASN LEU GLN THR LEU LYS SEQRES 4 A 169 ILE ARG VAL HIS GLU GLY TYR GLU GLU PHE THR MET VAL SEQRES 5 A 169 GLY LYS ARG ALA THR ALA ILE LEU ARG LYS ALA THR ARG SEQRES 6 A 169 ARG LEU VAL GLN LEU ILE VAL SER GLY LYS ASP GLU GLN SEQRES 7 A 169 SER ILE ALA GLU ALA ILE ILE VAL ALA MET VAL PHE SER SEQRES 8 A 169 GLN GLU ASP CYS MET ILE LYS ALA VAL ARG GLY ASP LEU SEQRES 9 A 169 ASN PHE VAL ASN ARG ALA ASN GLN ARG LEU ASN PRO MET SEQRES 10 A 169 HIS GLN LEU LEU ARG HIS PHE GLN LYS ASP ALA LYS VAL SEQRES 11 A 169 LEU PHE GLN ASN TRP GLY ILE GLU HIS ILE ASP ASN VAL SEQRES 12 A 169 MET GLY MET VAL GLY VAL LEU PRO ASP MET THR PRO SER SEQRES 13 A 169 THR GLU MET SER MET ARG GLY ILE ARG VAL SER LYS MET HET MGT A 501 33 HET 11H A 502 24 HET 11H A 503 24 HETNAM MGT 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE HETNAM 11H 9,10-DIOXO-9,10-DIHYDROANTHRACENE-2,6-DISULFONIC ACID FORMUL 2 MGT C11 H20 N5 O14 P3 FORMUL 3 11H 2(C14 H8 O8 S2) FORMUL 5 HOH *43(H2 O) HELIX 1 1 ASP A 390 SER A 405 1 16 HELIX 2 2 GLU A 407 ALA A 413 1 7 HELIX 3 3 ASN A 422 GLN A 426 5 5 HELIX 4 4 ASN A 429 ASP A 441 1 13 HELIX 5 5 ALA A 442 GLY A 450 1 9 SHEET 1 A 8 SER A 322 PHE A 325 0 SHEET 2 A 8 PHE A 328 GLY A 335 -1 O PHE A 330 N PHE A 323 SHEET 3 A 8 GLU A 361 VAL A 366 -1 O VAL A 366 N THR A 329 SHEET 4 A 8 ALA A 370 ALA A 377 -1 O LYS A 376 N GLU A 361 SHEET 5 A 8 ARG A 380 GLY A 388 -1 O SER A 387 N THR A 371 SHEET 6 A 8 ILE A 478 SER A 481 1 O SER A 481 N VAL A 386 SHEET 7 A 8 MET A 460 VAL A 463 -1 N VAL A 461 O VAL A 480 SHEET 8 A 8 PRO A 469 SER A 470 -1 O SER A 470 N GLY A 462 SHEET 1 B 2 ILE A 338 LEU A 345 0 SHEET 2 B 2 THR A 351 GLU A 358 -1 O GLU A 358 N ILE A 338 SHEET 1 C 2 ILE A 451 HIS A 453 0 SHEET 2 C 2 MET A 473 MET A 475 -1 O SER A 474 N GLU A 452 SITE 1 AC1 13 PHE A 323 ARG A 355 HIS A 357 GLU A 361 SITE 2 AC1 13 PHE A 363 LYS A 376 PHE A 404 GLN A 406 SITE 3 AC1 13 ASN A 429 HIS A 432 HOH A 622 HOH A 623 SITE 4 AC1 13 HOH A 632 SITE 1 AC2 14 ARG A 340 GLU A 342 GLU A 343 GLN A 350 SITE 2 AC2 14 THR A 351 LEU A 352 LYS A 353 LYS A 389 SITE 3 AC2 14 PHE A 420 VAL A 421 PRO A 430 LYS A 482 SITE 4 AC2 14 11H A 503 HOH A 639 SITE 1 AC3 7 LYS A 389 ARG A 423 MET A 458 GLY A 459 SITE 2 AC3 7 MET A 483 11H A 502 HOH A 612 CRYST1 81.440 81.440 54.560 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012279 0.007089 0.000000 0.00000 SCALE2 0.000000 0.014179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018328 0.00000