data_4NCV # _entry.id 4NCV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NCV pdb_00004ncv 10.2210/pdb4ncv/pdb RCSB RCSB083042 ? ? WWPDB D_1000083042 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1FRO 'Trimeric Foldon of the T4 phagehead fibritin (NMR structure)' unspecified PDB 4NCU 'foldon domain wild type (X-ray)' unspecified PDB 4NCW . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NCV _pdbx_database_status.recvd_initial_deposition_date 2013-10-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Graewert, M.A.' 1 'Berthelmann, A.' 2 'Lach, J.' 3 'Groll, M.' 4 'Eichler, J.' 5 # _citation.id primary _citation.title 'Versatile C(3)-symmetric scaffolds and their use for covalent stabilization of the foldon trimer.' _citation.journal_abbrev Org.Biomol.Chem. _citation.journal_volume 12 _citation.page_first 2606 _citation.page_last 2614 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1477-0520 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24637609 _citation.pdbx_database_id_DOI 10.1039/c3ob42251h # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Berthelmann, A.' 1 ? primary 'Lach, J.' 2 ? primary 'Grawert, M.A.' 3 ? primary 'Groll, M.' 4 ? primary 'Eichler, J.' 5 ? # _cell.entry_id 4NCV _cell.length_a 27.970 _cell.length_b 47.930 _cell.length_c 27.970 _cell.angle_alpha 90.00 _cell.angle_beta 92.82 _cell.angle_gamma 90.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NCV _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Fibritin 3110.499 3 ? ? 'C-terminus fragment (UNP residues 458-484)' ? 2 water nat water 18.015 126 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)GYIPEAPRDGQAYVRKDGEWVLLSTFL' _entity_poly.pdbx_seq_one_letter_code_can XGYIPEAPRDGQAYVRKDGEWVLLSTFL _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLY n 1 3 TYR n 1 4 ILE n 1 5 PRO n 1 6 GLU n 1 7 ALA n 1 8 PRO n 1 9 ARG n 1 10 ASP n 1 11 GLY n 1 12 GLN n 1 13 ALA n 1 14 TYR n 1 15 VAL n 1 16 ARG n 1 17 LYS n 1 18 ASP n 1 19 GLY n 1 20 GLU n 1 21 TRP n 1 22 VAL n 1 23 LEU n 1 24 LEU n 1 25 SER n 1 26 THR n 1 27 PHE n 1 28 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Enterobacteria phage T4' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 10665 _pdbx_entity_src_syn.details 'This sequence occurs naturally in bacteriophage T4 fibritin at its C-terminus and harbors an trimesic acid N-conjugate' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D9IEJ2_BPT4 _struct_ref.pdbx_db_accession D9IEJ2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GYIPEAPRDGQAYVRKDGEWVLLSTFL _struct_ref.pdbx_align_begin 458 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4NCV A 2 ? 28 ? D9IEJ2 458 ? 484 ? 1 27 2 1 4NCV B 2 ? 28 ? D9IEJ2 458 ? 484 ? 1 27 3 1 4NCV C 2 ? 28 ? D9IEJ2 458 ? 484 ? 1 27 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4NCV ACE A 1 ? UNP D9IEJ2 ? ? 'SEE REMARK 999' 0 1 2 4NCV ACE B 1 ? UNP D9IEJ2 ? ? 'SEE REMARK 999' 0 2 3 4NCV ACE C 1 ? UNP D9IEJ2 ? ? 'SEE REMARK 999' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4NCV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_percent_sol 38.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_details '1.4 M Na/K-phosphate, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-07-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'LN2 cooled fixed-exit. Si(111) monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 4NCV _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.2 _reflns.number_obs 22182 _reflns.number_all ? _reflns.percent_possible_obs 95.8 _reflns.pdbx_Rmerge_I_obs 0.032 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.2 _reflns_shell.d_res_low 1.3 _reflns_shell.percent_possible_all 91.9 _reflns_shell.Rmerge_I_obs 0.495 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4NCV _refine.ls_number_reflns_obs 21062 _refine.ls_number_reflns_all 22171 _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 1.20 _refine.ls_percent_reflns_obs 95.86 _refine.ls_R_factor_obs 0.13490 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.13346 _refine.ls_R_factor_R_free 0.16317 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1109 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.983 _refine.correlation_coeff_Fo_to_Fc_free 0.976 _refine.B_iso_mean 16.351 _refine.aniso_B[1][1] -0.82 _refine.aniso_B[2][2] 0.15 _refine.aniso_B[3][3] 0.67 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.05 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 4NCU _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.039 _refine.pdbx_overall_ESU_R_Free 0.039 _refine.overall_SU_ML 0.026 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.332 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 663 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 789 _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.007 0.020 ? 681 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 625 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.233 1.980 ? 926 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.716 3.000 ? 1434 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.897 5.000 ? 80 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 40.030 22.727 ? 33 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 9.640 15.000 ? 102 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 16.526 15.000 ? 6 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.070 0.200 ? 93 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.021 ? 773 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 161 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1.535 3.000 ? 1302 ? 'X-RAY DIFFRACTION' r_sphericity_free 22.615 5.000 ? 32 ? 'X-RAY DIFFRACTION' r_sphericity_bonded 5.802 5.000 ? 1378 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.200 _refine_ls_shell.d_res_low 1.231 _refine_ls_shell.number_reflns_R_work 1458 _refine_ls_shell.R_factor_R_work 0.258 _refine_ls_shell.percent_reflns_obs 89.71 _refine_ls_shell.R_factor_R_free 0.287 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4NCV _struct.title 'Foldon domain wild type N-conjugate' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NCV _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'trimeric scaffold, chemical ligation, folding, trazido-functionalized trimesic acid scaffold, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 25 ? PHE A 27 ? SER A 24 PHE A 26 5 ? 3 HELX_P HELX_P2 2 SER B 25 ? PHE B 27 ? SER B 24 PHE B 26 5 ? 3 HELX_P HELX_P3 3 SER C 25 ? PHE C 27 ? SER C 24 PHE C 26 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A GLY 2 N ? ? A ACE 0 A GLY 1 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale2 covale both ? B ACE 1 C ? ? ? 1_555 B GLY 2 N ? ? B ACE 0 B GLY 1 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 20 ? LEU A 23 ? GLU A 19 LEU A 22 A 2 ALA A 13 ? LYS A 17 ? ALA A 12 LYS A 16 A 3 TYR B 14 ? LYS B 17 ? TYR B 13 LYS B 16 A 4 GLU B 20 ? LEU B 23 ? GLU B 19 LEU B 22 B 1 TYR C 14 ? LYS C 17 ? TYR C 13 LYS C 16 B 2 GLU C 20 ? LEU C 23 ? GLU C 19 LEU C 22 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 22 ? O VAL A 21 N VAL A 15 ? N VAL A 14 A 2 3 N TYR A 14 ? N TYR A 13 O ARG B 16 ? O ARG B 15 A 3 4 N VAL B 15 ? N VAL B 14 O VAL B 22 ? O VAL B 21 B 1 2 N VAL C 15 ? N VAL C 14 O VAL C 22 ? O VAL C 21 # _database_PDB_matrix.entry_id 4NCV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4NCV _atom_sites.fract_transf_matrix[1][1] 0.035753 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001759 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020864 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.035796 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 GLY 2 1 1 GLY GLY A . n A 1 3 TYR 3 2 2 TYR TYR A . n A 1 4 ILE 4 3 3 ILE ILE A . n A 1 5 PRO 5 4 4 PRO PRO A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 ALA 7 6 6 ALA ALA A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 GLY 11 10 10 GLY GLY A . n A 1 12 GLN 12 11 11 GLN GLN A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 TYR 14 13 13 TYR TYR A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 ARG 16 15 15 ARG ARG A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 ASP 18 17 17 ASP ASP A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 TRP 21 20 20 TRP TRP A . n A 1 22 VAL 22 21 21 VAL VAL A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 SER 25 24 24 SER SER A . n A 1 26 THR 26 25 25 THR THR A . n A 1 27 PHE 27 26 26 PHE PHE A . n A 1 28 LEU 28 27 27 LEU LEU A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 GLY 2 1 1 GLY GLY B . n B 1 3 TYR 3 2 2 TYR TYR B . n B 1 4 ILE 4 3 3 ILE ILE B . n B 1 5 PRO 5 4 4 PRO PRO B . n B 1 6 GLU 6 5 5 GLU GLU B . n B 1 7 ALA 7 6 6 ALA ALA B . n B 1 8 PRO 8 7 7 PRO PRO B . n B 1 9 ARG 9 8 8 ARG ARG B . n B 1 10 ASP 10 9 9 ASP ASP B . n B 1 11 GLY 11 10 10 GLY GLY B . n B 1 12 GLN 12 11 11 GLN GLN B . n B 1 13 ALA 13 12 12 ALA ALA B . n B 1 14 TYR 14 13 13 TYR TYR B . n B 1 15 VAL 15 14 14 VAL VAL B . n B 1 16 ARG 16 15 15 ARG ARG B . n B 1 17 LYS 17 16 16 LYS LYS B . n B 1 18 ASP 18 17 17 ASP ASP B . n B 1 19 GLY 19 18 18 GLY GLY B . n B 1 20 GLU 20 19 19 GLU GLU B . n B 1 21 TRP 21 20 20 TRP TRP B . n B 1 22 VAL 22 21 21 VAL VAL B . n B 1 23 LEU 23 22 22 LEU LEU B . n B 1 24 LEU 24 23 23 LEU LEU B . n B 1 25 SER 25 24 24 SER SER B . n B 1 26 THR 26 25 25 THR THR B . n B 1 27 PHE 27 26 26 PHE PHE B . n B 1 28 LEU 28 27 27 LEU LEU B . n C 1 1 ACE 1 0 ? ? ? C . n C 1 2 GLY 2 1 1 GLY GLY C . n C 1 3 TYR 3 2 2 TYR TYR C . n C 1 4 ILE 4 3 3 ILE ILE C . n C 1 5 PRO 5 4 4 PRO PRO C . n C 1 6 GLU 6 5 5 GLU GLU C . n C 1 7 ALA 7 6 6 ALA ALA C . n C 1 8 PRO 8 7 7 PRO PRO C . n C 1 9 ARG 9 8 8 ARG ARG C . n C 1 10 ASP 10 9 9 ASP ASP C . n C 1 11 GLY 11 10 10 GLY GLY C . n C 1 12 GLN 12 11 11 GLN GLN C . n C 1 13 ALA 13 12 12 ALA ALA C . n C 1 14 TYR 14 13 13 TYR TYR C . n C 1 15 VAL 15 14 14 VAL VAL C . n C 1 16 ARG 16 15 15 ARG ARG C . n C 1 17 LYS 17 16 16 LYS LYS C . n C 1 18 ASP 18 17 17 ASP ASP C . n C 1 19 GLY 19 18 18 GLY GLY C . n C 1 20 GLU 20 19 19 GLU GLU C . n C 1 21 TRP 21 20 20 TRP TRP C . n C 1 22 VAL 22 21 21 VAL VAL C . n C 1 23 LEU 23 22 22 LEU LEU C . n C 1 24 LEU 24 23 23 LEU LEU C . n C 1 25 SER 25 24 24 SER SER C . n C 1 26 THR 26 25 25 THR THR C . n C 1 27 PHE 27 26 26 PHE PHE C . n C 1 28 LEU 28 27 27 LEU LEU C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 101 4 HOH HOH A . D 2 HOH 2 102 7 HOH HOH A . D 2 HOH 3 103 9 HOH HOH A . D 2 HOH 4 104 11 HOH HOH A . D 2 HOH 5 105 13 HOH HOH A . D 2 HOH 6 106 16 HOH HOH A . D 2 HOH 7 107 21 HOH HOH A . D 2 HOH 8 108 22 HOH HOH A . D 2 HOH 9 109 23 HOH HOH A . D 2 HOH 10 110 24 HOH HOH A . D 2 HOH 11 111 29 HOH HOH A . D 2 HOH 12 112 40 HOH HOH A . D 2 HOH 13 113 47 HOH HOH A . D 2 HOH 14 114 49 HOH HOH A . D 2 HOH 15 115 51 HOH HOH A . D 2 HOH 16 116 57 HOH HOH A . D 2 HOH 17 117 59 HOH HOH A . D 2 HOH 18 118 60 HOH HOH A . D 2 HOH 19 119 61 HOH HOH A . D 2 HOH 20 120 66 HOH HOH A . D 2 HOH 21 121 77 HOH HOH A . D 2 HOH 22 122 81 HOH HOH A . D 2 HOH 23 123 83 HOH HOH A . D 2 HOH 24 124 84 HOH HOH A . D 2 HOH 25 125 90 HOH HOH A . D 2 HOH 26 126 91 HOH HOH A . D 2 HOH 27 127 94 HOH HOH A . D 2 HOH 28 128 99 HOH HOH A . D 2 HOH 29 129 100 HOH HOH A . D 2 HOH 30 130 103 HOH HOH A . D 2 HOH 31 131 106 HOH HOH A . D 2 HOH 32 132 109 HOH HOH A . D 2 HOH 33 133 110 HOH HOH A . D 2 HOH 34 134 111 HOH HOH A . D 2 HOH 35 135 112 HOH HOH A . D 2 HOH 36 136 113 HOH HOH A . D 2 HOH 37 137 114 HOH HOH A . D 2 HOH 38 138 121 HOH HOH A . D 2 HOH 39 139 125 HOH HOH A . E 2 HOH 1 101 2 HOH HOH B . E 2 HOH 2 102 3 HOH HOH B . E 2 HOH 3 103 8 HOH HOH B . E 2 HOH 4 104 12 HOH HOH B . E 2 HOH 5 105 14 HOH HOH B . E 2 HOH 6 106 19 HOH HOH B . E 2 HOH 7 107 25 HOH HOH B . E 2 HOH 8 108 32 HOH HOH B . E 2 HOH 9 109 33 HOH HOH B . E 2 HOH 10 110 34 HOH HOH B . E 2 HOH 11 111 35 HOH HOH B . E 2 HOH 12 112 37 HOH HOH B . E 2 HOH 13 113 38 HOH HOH B . E 2 HOH 14 114 41 HOH HOH B . E 2 HOH 15 115 44 HOH HOH B . E 2 HOH 16 116 46 HOH HOH B . E 2 HOH 17 117 50 HOH HOH B . E 2 HOH 18 118 54 HOH HOH B . E 2 HOH 19 119 56 HOH HOH B . E 2 HOH 20 120 62 HOH HOH B . E 2 HOH 21 121 63 HOH HOH B . E 2 HOH 22 122 64 HOH HOH B . E 2 HOH 23 123 71 HOH HOH B . E 2 HOH 24 124 72 HOH HOH B . E 2 HOH 25 125 74 HOH HOH B . E 2 HOH 26 126 75 HOH HOH B . E 2 HOH 27 127 76 HOH HOH B . E 2 HOH 28 128 78 HOH HOH B . E 2 HOH 29 129 79 HOH HOH B . E 2 HOH 30 130 82 HOH HOH B . E 2 HOH 31 131 85 HOH HOH B . E 2 HOH 32 132 86 HOH HOH B . E 2 HOH 33 133 87 HOH HOH B . E 2 HOH 34 134 88 HOH HOH B . E 2 HOH 35 135 93 HOH HOH B . E 2 HOH 36 136 96 HOH HOH B . E 2 HOH 37 137 101 HOH HOH B . E 2 HOH 38 138 105 HOH HOH B . E 2 HOH 39 139 108 HOH HOH B . E 2 HOH 40 140 117 HOH HOH B . E 2 HOH 41 141 118 HOH HOH B . E 2 HOH 42 142 123 HOH HOH B . E 2 HOH 43 143 126 HOH HOH B . F 2 HOH 1 101 1 HOH HOH C . F 2 HOH 2 102 5 HOH HOH C . F 2 HOH 3 103 6 HOH HOH C . F 2 HOH 4 104 10 HOH HOH C . F 2 HOH 5 105 15 HOH HOH C . F 2 HOH 6 106 17 HOH HOH C . F 2 HOH 7 107 18 HOH HOH C . F 2 HOH 8 108 20 HOH HOH C . F 2 HOH 9 109 26 HOH HOH C . F 2 HOH 10 110 27 HOH HOH C . F 2 HOH 11 111 28 HOH HOH C . F 2 HOH 12 112 30 HOH HOH C . F 2 HOH 13 113 31 HOH HOH C . F 2 HOH 14 114 36 HOH HOH C . F 2 HOH 15 115 39 HOH HOH C . F 2 HOH 16 116 42 HOH HOH C . F 2 HOH 17 117 43 HOH HOH C . F 2 HOH 18 118 45 HOH HOH C . F 2 HOH 19 119 48 HOH HOH C . F 2 HOH 20 120 52 HOH HOH C . F 2 HOH 21 121 53 HOH HOH C . F 2 HOH 22 122 55 HOH HOH C . F 2 HOH 23 123 58 HOH HOH C . F 2 HOH 24 124 65 HOH HOH C . F 2 HOH 25 125 67 HOH HOH C . F 2 HOH 26 126 68 HOH HOH C . F 2 HOH 27 127 69 HOH HOH C . F 2 HOH 28 128 70 HOH HOH C . F 2 HOH 29 129 73 HOH HOH C . F 2 HOH 30 130 80 HOH HOH C . F 2 HOH 31 131 89 HOH HOH C . F 2 HOH 32 132 92 HOH HOH C . F 2 HOH 33 133 95 HOH HOH C . F 2 HOH 34 134 97 HOH HOH C . F 2 HOH 35 135 98 HOH HOH C . F 2 HOH 36 136 102 HOH HOH C . F 2 HOH 37 137 104 HOH HOH C . F 2 HOH 38 138 107 HOH HOH C . F 2 HOH 39 139 115 HOH HOH C . F 2 HOH 40 140 116 HOH HOH C . F 2 HOH 41 141 119 HOH HOH C . F 2 HOH 42 142 120 HOH HOH C . F 2 HOH 43 143 122 HOH HOH C . F 2 HOH 44 144 124 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3320 ? 1 MORE -23 ? 1 'SSA (A^2)' 4680 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-12 2 'Structure model' 1 1 2014-10-08 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 0.9557 -2.3945 30.8845 0.0123 0.0100 0.0076 -0.0004 -0.0026 0.0003 0.1993 0.3863 0.1742 -0.2642 0.1149 -0.0908 -0.0195 -0.0222 -0.0217 0.0108 0.0293 0.0318 -0.0318 -0.0152 -0.0099 'X-RAY DIFFRACTION' 2 ? refined 11.4084 -2.7378 32.9509 0.0140 0.0138 0.0149 0.0009 -0.0016 -0.0078 0.2786 0.5048 0.1701 -0.0137 -0.0167 0.0787 -0.0308 -0.0401 0.0169 0.0172 0.0509 -0.0646 -0.0355 0.0299 -0.0202 'X-RAY DIFFRACTION' 3 ? refined 6.7660 -10.0428 26.4926 0.0376 0.0204 0.0132 0.0017 -0.0014 -0.0098 0.1998 0.7764 0.1022 -0.1547 -0.0282 0.2159 -0.0378 0.0248 -0.0310 -0.0335 0.0542 -0.0038 0.0186 0.0361 -0.0163 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 27 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 0 B 27 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 1 C 27 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0029 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 4NCV _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;A TRIMESIC ACID DERIVATIVE WAS USED TO CROSSLINK THE THREE FOLDON SUBUNITS AT THEIR N-NERMINI. ONLY PART OF THE TRIMESIC ACID IS DEFINED IN THE ELECTRON DENSITY FOR THIS STRUCTURE. IT IS PRESENT AS AN ACE GROUP IN THE COORDINATES. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 9 ? ? -142.84 20.65 2 1 ARG B 8 ? ? -101.21 62.04 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id C _pdbx_unobs_or_zero_occ_residues.auth_comp_id ACE _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id C _pdbx_unobs_or_zero_occ_residues.label_comp_id ACE _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASP N N N N 48 ASP CA C N S 49 ASP C C N N 50 ASP O O N N 51 ASP CB C N N 52 ASP CG C N N 53 ASP OD1 O N N 54 ASP OD2 O N N 55 ASP OXT O N N 56 ASP H H N N 57 ASP H2 H N N 58 ASP HA H N N 59 ASP HB2 H N N 60 ASP HB3 H N N 61 ASP HD2 H N N 62 ASP HXT H N N 63 GLN N N N N 64 GLN CA C N S 65 GLN C C N N 66 GLN O O N N 67 GLN CB C N N 68 GLN CG C N N 69 GLN CD C N N 70 GLN OE1 O N N 71 GLN NE2 N N N 72 GLN OXT O N N 73 GLN H H N N 74 GLN H2 H N N 75 GLN HA H N N 76 GLN HB2 H N N 77 GLN HB3 H N N 78 GLN HG2 H N N 79 GLN HG3 H N N 80 GLN HE21 H N N 81 GLN HE22 H N N 82 GLN HXT H N N 83 GLU N N N N 84 GLU CA C N S 85 GLU C C N N 86 GLU O O N N 87 GLU CB C N N 88 GLU CG C N N 89 GLU CD C N N 90 GLU OE1 O N N 91 GLU OE2 O N N 92 GLU OXT O N N 93 GLU H H N N 94 GLU H2 H N N 95 GLU HA H N N 96 GLU HB2 H N N 97 GLU HB3 H N N 98 GLU HG2 H N N 99 GLU HG3 H N N 100 GLU HE2 H N N 101 GLU HXT H N N 102 GLY N N N N 103 GLY CA C N N 104 GLY C C N N 105 GLY O O N N 106 GLY OXT O N N 107 GLY H H N N 108 GLY H2 H N N 109 GLY HA2 H N N 110 GLY HA3 H N N 111 GLY HXT H N N 112 HOH O O N N 113 HOH H1 H N N 114 HOH H2 H N N 115 ILE N N N N 116 ILE CA C N S 117 ILE C C N N 118 ILE O O N N 119 ILE CB C N S 120 ILE CG1 C N N 121 ILE CG2 C N N 122 ILE CD1 C N N 123 ILE OXT O N N 124 ILE H H N N 125 ILE H2 H N N 126 ILE HA H N N 127 ILE HB H N N 128 ILE HG12 H N N 129 ILE HG13 H N N 130 ILE HG21 H N N 131 ILE HG22 H N N 132 ILE HG23 H N N 133 ILE HD11 H N N 134 ILE HD12 H N N 135 ILE HD13 H N N 136 ILE HXT H N N 137 LEU N N N N 138 LEU CA C N S 139 LEU C C N N 140 LEU O O N N 141 LEU CB C N N 142 LEU CG C N N 143 LEU CD1 C N N 144 LEU CD2 C N N 145 LEU OXT O N N 146 LEU H H N N 147 LEU H2 H N N 148 LEU HA H N N 149 LEU HB2 H N N 150 LEU HB3 H N N 151 LEU HG H N N 152 LEU HD11 H N N 153 LEU HD12 H N N 154 LEU HD13 H N N 155 LEU HD21 H N N 156 LEU HD22 H N N 157 LEU HD23 H N N 158 LEU HXT H N N 159 LYS N N N N 160 LYS CA C N S 161 LYS C C N N 162 LYS O O N N 163 LYS CB C N N 164 LYS CG C N N 165 LYS CD C N N 166 LYS CE C N N 167 LYS NZ N N N 168 LYS OXT O N N 169 LYS H H N N 170 LYS H2 H N N 171 LYS HA H N N 172 LYS HB2 H N N 173 LYS HB3 H N N 174 LYS HG2 H N N 175 LYS HG3 H N N 176 LYS HD2 H N N 177 LYS HD3 H N N 178 LYS HE2 H N N 179 LYS HE3 H N N 180 LYS HZ1 H N N 181 LYS HZ2 H N N 182 LYS HZ3 H N N 183 LYS HXT H N N 184 PHE N N N N 185 PHE CA C N S 186 PHE C C N N 187 PHE O O N N 188 PHE CB C N N 189 PHE CG C Y N 190 PHE CD1 C Y N 191 PHE CD2 C Y N 192 PHE CE1 C Y N 193 PHE CE2 C Y N 194 PHE CZ C Y N 195 PHE OXT O N N 196 PHE H H N N 197 PHE H2 H N N 198 PHE HA H N N 199 PHE HB2 H N N 200 PHE HB3 H N N 201 PHE HD1 H N N 202 PHE HD2 H N N 203 PHE HE1 H N N 204 PHE HE2 H N N 205 PHE HZ H N N 206 PHE HXT H N N 207 PRO N N N N 208 PRO CA C N S 209 PRO C C N N 210 PRO O O N N 211 PRO CB C N N 212 PRO CG C N N 213 PRO CD C N N 214 PRO OXT O N N 215 PRO H H N N 216 PRO HA H N N 217 PRO HB2 H N N 218 PRO HB3 H N N 219 PRO HG2 H N N 220 PRO HG3 H N N 221 PRO HD2 H N N 222 PRO HD3 H N N 223 PRO HXT H N N 224 SER N N N N 225 SER CA C N S 226 SER C C N N 227 SER O O N N 228 SER CB C N N 229 SER OG O N N 230 SER OXT O N N 231 SER H H N N 232 SER H2 H N N 233 SER HA H N N 234 SER HB2 H N N 235 SER HB3 H N N 236 SER HG H N N 237 SER HXT H N N 238 THR N N N N 239 THR CA C N S 240 THR C C N N 241 THR O O N N 242 THR CB C N R 243 THR OG1 O N N 244 THR CG2 C N N 245 THR OXT O N N 246 THR H H N N 247 THR H2 H N N 248 THR HA H N N 249 THR HB H N N 250 THR HG1 H N N 251 THR HG21 H N N 252 THR HG22 H N N 253 THR HG23 H N N 254 THR HXT H N N 255 TRP N N N N 256 TRP CA C N S 257 TRP C C N N 258 TRP O O N N 259 TRP CB C N N 260 TRP CG C Y N 261 TRP CD1 C Y N 262 TRP CD2 C Y N 263 TRP NE1 N Y N 264 TRP CE2 C Y N 265 TRP CE3 C Y N 266 TRP CZ2 C Y N 267 TRP CZ3 C Y N 268 TRP CH2 C Y N 269 TRP OXT O N N 270 TRP H H N N 271 TRP H2 H N N 272 TRP HA H N N 273 TRP HB2 H N N 274 TRP HB3 H N N 275 TRP HD1 H N N 276 TRP HE1 H N N 277 TRP HE3 H N N 278 TRP HZ2 H N N 279 TRP HZ3 H N N 280 TRP HH2 H N N 281 TRP HXT H N N 282 TYR N N N N 283 TYR CA C N S 284 TYR C C N N 285 TYR O O N N 286 TYR CB C N N 287 TYR CG C Y N 288 TYR CD1 C Y N 289 TYR CD2 C Y N 290 TYR CE1 C Y N 291 TYR CE2 C Y N 292 TYR CZ C Y N 293 TYR OH O N N 294 TYR OXT O N N 295 TYR H H N N 296 TYR H2 H N N 297 TYR HA H N N 298 TYR HB2 H N N 299 TYR HB3 H N N 300 TYR HD1 H N N 301 TYR HD2 H N N 302 TYR HE1 H N N 303 TYR HE2 H N N 304 TYR HH H N N 305 TYR HXT H N N 306 VAL N N N N 307 VAL CA C N S 308 VAL C C N N 309 VAL O O N N 310 VAL CB C N N 311 VAL CG1 C N N 312 VAL CG2 C N N 313 VAL OXT O N N 314 VAL H H N N 315 VAL H2 H N N 316 VAL HA H N N 317 VAL HB H N N 318 VAL HG11 H N N 319 VAL HG12 H N N 320 VAL HG13 H N N 321 VAL HG21 H N N 322 VAL HG22 H N N 323 VAL HG23 H N N 324 VAL HXT H N N 325 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASP N CA sing N N 45 ASP N H sing N N 46 ASP N H2 sing N N 47 ASP CA C sing N N 48 ASP CA CB sing N N 49 ASP CA HA sing N N 50 ASP C O doub N N 51 ASP C OXT sing N N 52 ASP CB CG sing N N 53 ASP CB HB2 sing N N 54 ASP CB HB3 sing N N 55 ASP CG OD1 doub N N 56 ASP CG OD2 sing N N 57 ASP OD2 HD2 sing N N 58 ASP OXT HXT sing N N 59 GLN N CA sing N N 60 GLN N H sing N N 61 GLN N H2 sing N N 62 GLN CA C sing N N 63 GLN CA CB sing N N 64 GLN CA HA sing N N 65 GLN C O doub N N 66 GLN C OXT sing N N 67 GLN CB CG sing N N 68 GLN CB HB2 sing N N 69 GLN CB HB3 sing N N 70 GLN CG CD sing N N 71 GLN CG HG2 sing N N 72 GLN CG HG3 sing N N 73 GLN CD OE1 doub N N 74 GLN CD NE2 sing N N 75 GLN NE2 HE21 sing N N 76 GLN NE2 HE22 sing N N 77 GLN OXT HXT sing N N 78 GLU N CA sing N N 79 GLU N H sing N N 80 GLU N H2 sing N N 81 GLU CA C sing N N 82 GLU CA CB sing N N 83 GLU CA HA sing N N 84 GLU C O doub N N 85 GLU C OXT sing N N 86 GLU CB CG sing N N 87 GLU CB HB2 sing N N 88 GLU CB HB3 sing N N 89 GLU CG CD sing N N 90 GLU CG HG2 sing N N 91 GLU CG HG3 sing N N 92 GLU CD OE1 doub N N 93 GLU CD OE2 sing N N 94 GLU OE2 HE2 sing N N 95 GLU OXT HXT sing N N 96 GLY N CA sing N N 97 GLY N H sing N N 98 GLY N H2 sing N N 99 GLY CA C sing N N 100 GLY CA HA2 sing N N 101 GLY CA HA3 sing N N 102 GLY C O doub N N 103 GLY C OXT sing N N 104 GLY OXT HXT sing N N 105 HOH O H1 sing N N 106 HOH O H2 sing N N 107 ILE N CA sing N N 108 ILE N H sing N N 109 ILE N H2 sing N N 110 ILE CA C sing N N 111 ILE CA CB sing N N 112 ILE CA HA sing N N 113 ILE C O doub N N 114 ILE C OXT sing N N 115 ILE CB CG1 sing N N 116 ILE CB CG2 sing N N 117 ILE CB HB sing N N 118 ILE CG1 CD1 sing N N 119 ILE CG1 HG12 sing N N 120 ILE CG1 HG13 sing N N 121 ILE CG2 HG21 sing N N 122 ILE CG2 HG22 sing N N 123 ILE CG2 HG23 sing N N 124 ILE CD1 HD11 sing N N 125 ILE CD1 HD12 sing N N 126 ILE CD1 HD13 sing N N 127 ILE OXT HXT sing N N 128 LEU N CA sing N N 129 LEU N H sing N N 130 LEU N H2 sing N N 131 LEU CA C sing N N 132 LEU CA CB sing N N 133 LEU CA HA sing N N 134 LEU C O doub N N 135 LEU C OXT sing N N 136 LEU CB CG sing N N 137 LEU CB HB2 sing N N 138 LEU CB HB3 sing N N 139 LEU CG CD1 sing N N 140 LEU CG CD2 sing N N 141 LEU CG HG sing N N 142 LEU CD1 HD11 sing N N 143 LEU CD1 HD12 sing N N 144 LEU CD1 HD13 sing N N 145 LEU CD2 HD21 sing N N 146 LEU CD2 HD22 sing N N 147 LEU CD2 HD23 sing N N 148 LEU OXT HXT sing N N 149 LYS N CA sing N N 150 LYS N H sing N N 151 LYS N H2 sing N N 152 LYS CA C sing N N 153 LYS CA CB sing N N 154 LYS CA HA sing N N 155 LYS C O doub N N 156 LYS C OXT sing N N 157 LYS CB CG sing N N 158 LYS CB HB2 sing N N 159 LYS CB HB3 sing N N 160 LYS CG CD sing N N 161 LYS CG HG2 sing N N 162 LYS CG HG3 sing N N 163 LYS CD CE sing N N 164 LYS CD HD2 sing N N 165 LYS CD HD3 sing N N 166 LYS CE NZ sing N N 167 LYS CE HE2 sing N N 168 LYS CE HE3 sing N N 169 LYS NZ HZ1 sing N N 170 LYS NZ HZ2 sing N N 171 LYS NZ HZ3 sing N N 172 LYS OXT HXT sing N N 173 PHE N CA sing N N 174 PHE N H sing N N 175 PHE N H2 sing N N 176 PHE CA C sing N N 177 PHE CA CB sing N N 178 PHE CA HA sing N N 179 PHE C O doub N N 180 PHE C OXT sing N N 181 PHE CB CG sing N N 182 PHE CB HB2 sing N N 183 PHE CB HB3 sing N N 184 PHE CG CD1 doub Y N 185 PHE CG CD2 sing Y N 186 PHE CD1 CE1 sing Y N 187 PHE CD1 HD1 sing N N 188 PHE CD2 CE2 doub Y N 189 PHE CD2 HD2 sing N N 190 PHE CE1 CZ doub Y N 191 PHE CE1 HE1 sing N N 192 PHE CE2 CZ sing Y N 193 PHE CE2 HE2 sing N N 194 PHE CZ HZ sing N N 195 PHE OXT HXT sing N N 196 PRO N CA sing N N 197 PRO N CD sing N N 198 PRO N H sing N N 199 PRO CA C sing N N 200 PRO CA CB sing N N 201 PRO CA HA sing N N 202 PRO C O doub N N 203 PRO C OXT sing N N 204 PRO CB CG sing N N 205 PRO CB HB2 sing N N 206 PRO CB HB3 sing N N 207 PRO CG CD sing N N 208 PRO CG HG2 sing N N 209 PRO CG HG3 sing N N 210 PRO CD HD2 sing N N 211 PRO CD HD3 sing N N 212 PRO OXT HXT sing N N 213 SER N CA sing N N 214 SER N H sing N N 215 SER N H2 sing N N 216 SER CA C sing N N 217 SER CA CB sing N N 218 SER CA HA sing N N 219 SER C O doub N N 220 SER C OXT sing N N 221 SER CB OG sing N N 222 SER CB HB2 sing N N 223 SER CB HB3 sing N N 224 SER OG HG sing N N 225 SER OXT HXT sing N N 226 THR N CA sing N N 227 THR N H sing N N 228 THR N H2 sing N N 229 THR CA C sing N N 230 THR CA CB sing N N 231 THR CA HA sing N N 232 THR C O doub N N 233 THR C OXT sing N N 234 THR CB OG1 sing N N 235 THR CB CG2 sing N N 236 THR CB HB sing N N 237 THR OG1 HG1 sing N N 238 THR CG2 HG21 sing N N 239 THR CG2 HG22 sing N N 240 THR CG2 HG23 sing N N 241 THR OXT HXT sing N N 242 TRP N CA sing N N 243 TRP N H sing N N 244 TRP N H2 sing N N 245 TRP CA C sing N N 246 TRP CA CB sing N N 247 TRP CA HA sing N N 248 TRP C O doub N N 249 TRP C OXT sing N N 250 TRP CB CG sing N N 251 TRP CB HB2 sing N N 252 TRP CB HB3 sing N N 253 TRP CG CD1 doub Y N 254 TRP CG CD2 sing Y N 255 TRP CD1 NE1 sing Y N 256 TRP CD1 HD1 sing N N 257 TRP CD2 CE2 doub Y N 258 TRP CD2 CE3 sing Y N 259 TRP NE1 CE2 sing Y N 260 TRP NE1 HE1 sing N N 261 TRP CE2 CZ2 sing Y N 262 TRP CE3 CZ3 doub Y N 263 TRP CE3 HE3 sing N N 264 TRP CZ2 CH2 doub Y N 265 TRP CZ2 HZ2 sing N N 266 TRP CZ3 CH2 sing Y N 267 TRP CZ3 HZ3 sing N N 268 TRP CH2 HH2 sing N N 269 TRP OXT HXT sing N N 270 TYR N CA sing N N 271 TYR N H sing N N 272 TYR N H2 sing N N 273 TYR CA C sing N N 274 TYR CA CB sing N N 275 TYR CA HA sing N N 276 TYR C O doub N N 277 TYR C OXT sing N N 278 TYR CB CG sing N N 279 TYR CB HB2 sing N N 280 TYR CB HB3 sing N N 281 TYR CG CD1 doub Y N 282 TYR CG CD2 sing Y N 283 TYR CD1 CE1 sing Y N 284 TYR CD1 HD1 sing N N 285 TYR CD2 CE2 doub Y N 286 TYR CD2 HD2 sing N N 287 TYR CE1 CZ doub Y N 288 TYR CE1 HE1 sing N N 289 TYR CE2 CZ sing Y N 290 TYR CE2 HE2 sing N N 291 TYR CZ OH sing N N 292 TYR OH HH sing N N 293 TYR OXT HXT sing N N 294 VAL N CA sing N N 295 VAL N H sing N N 296 VAL N H2 sing N N 297 VAL CA C sing N N 298 VAL CA CB sing N N 299 VAL CA HA sing N N 300 VAL C O doub N N 301 VAL C OXT sing N N 302 VAL CB CG1 sing N N 303 VAL CB CG2 sing N N 304 VAL CB HB sing N N 305 VAL CG1 HG11 sing N N 306 VAL CG1 HG12 sing N N 307 VAL CG1 HG13 sing N N 308 VAL CG2 HG21 sing N N 309 VAL CG2 HG22 sing N N 310 VAL CG2 HG23 sing N N 311 VAL OXT HXT sing N N 312 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4NCU _pdbx_initial_refinement_model.details ? #