HEADER FLUORESCENT PROTEIN, DE NOVO PROTEIN 26-OCT-13 4NDJ TITLE CRYSTAL STRUCTURE OF A COMPUTATIONAL DESIGNED ENGRAILED HOMEODOMAIN TITLE 2 VARIANT FUSED WITH YFP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN, CHIMERIC CONSTRUCT,GFP-LIKE COMPND 3 FLUORESCENT CHROMOPROTEIN FP506, RELATED; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, EIMERIA ACERVULINA; SOURCE 3 ORGANISM_COMMON: JELLYFISH, COCCIDIAN PARASITE; SOURCE 4 ORGANISM_TAXID: 6100, 5801; SOURCE 5 GENE: GFP, EAH_00062270; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELIX-TURN-HELIX, FLUORESCENT PROTEIN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.MOU,S.L.MAYO REVDAT 5 18-OCT-17 4NDJ 1 COMPND SOURCE REMARK DBREF REVDAT 5 2 1 SEQADV REVDAT 4 19-AUG-15 4NDJ 1 JRNL REVDAT 3 15-JUL-15 4NDJ 1 JRNL REVDAT 2 28-JAN-15 4NDJ 1 DBREF REVDAT 1 05-NOV-14 4NDJ 0 JRNL AUTH Y.MOU,P.S.HUANG,L.M.THOMAS,S.L.MAYO JRNL TITL USING MOLECULAR DYNAMICS SIMULATIONS AS AN AID IN THE JRNL TITL 2 PREDICTION OF DOMAIN SWAPPING OF COMPUTATIONALLY DESIGNED JRNL TITL 3 PROTEIN VARIANTS. JRNL REF J.MOL.BIOL. V. 427 2697 2015 JRNL REFN ISSN 0022-2836 JRNL PMID 26101839 JRNL DOI 10.1016/J.JMB.2015.06.006 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 38078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9644 - 4.4539 0.90 2538 124 0.1907 0.2040 REMARK 3 2 4.4539 - 3.5372 0.99 2641 141 0.1539 0.1845 REMARK 3 3 3.5372 - 3.0906 1.00 2635 138 0.1689 0.1750 REMARK 3 4 3.0906 - 2.8083 1.00 2603 150 0.1805 0.2181 REMARK 3 5 2.8083 - 2.6072 1.00 2609 144 0.1787 0.2134 REMARK 3 6 2.6072 - 2.4535 1.00 2578 147 0.1801 0.2029 REMARK 3 7 2.4535 - 2.3307 1.00 2600 129 0.1796 0.2403 REMARK 3 8 2.3307 - 2.2293 1.00 2547 141 0.1732 0.2091 REMARK 3 9 2.2293 - 2.1435 1.00 2602 131 0.1741 0.2158 REMARK 3 10 2.1435 - 2.0696 1.00 2587 110 0.1676 0.1847 REMARK 3 11 2.0696 - 2.0049 1.00 2558 143 0.1663 0.1949 REMARK 3 12 2.0049 - 1.9476 1.00 2570 134 0.1607 0.1822 REMARK 3 13 1.9476 - 1.8963 1.00 2542 144 0.1703 0.2029 REMARK 3 14 1.8963 - 1.8500 1.00 2577 115 0.1922 0.2296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2347 REMARK 3 ANGLE : 1.191 3167 REMARK 3 CHIRALITY : 0.080 331 REMARK 3 PLANARITY : 0.005 412 REMARK 3 DIHEDRAL : 16.561 884 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2960 7.1238 -43.7959 REMARK 3 T TENSOR REMARK 3 T11: 0.2024 T22: 0.1322 REMARK 3 T33: 0.3351 T12: 0.0203 REMARK 3 T13: 0.0081 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 4.0906 L22: 3.3086 REMARK 3 L33: 1.3166 L12: -0.1437 REMARK 3 L13: 0.5161 L23: -0.2941 REMARK 3 S TENSOR REMARK 3 S11: 0.0995 S12: 0.3668 S13: -0.3599 REMARK 3 S21: -0.4115 S22: 0.0439 S23: -0.4866 REMARK 3 S31: 0.0773 S32: 0.1955 S33: -0.0920 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 34:59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3216 17.0803 -36.3319 REMARK 3 T TENSOR REMARK 3 T11: 0.2728 T22: 0.0881 REMARK 3 T33: 0.3516 T12: -0.0218 REMARK 3 T13: -0.0545 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.9042 L22: 1.8625 REMARK 3 L33: 4.7182 L12: 0.5026 REMARK 3 L13: 0.9656 L23: 1.0579 REMARK 3 S TENSOR REMARK 3 S11: 0.1727 S12: -0.0368 S13: 0.0326 REMARK 3 S21: 0.1636 S22: 0.0118 S23: 0.5223 REMARK 3 S31: -0.1425 S32: -0.1737 S33: 0.0525 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 60:178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3695 33.8042 -17.7245 REMARK 3 T TENSOR REMARK 3 T11: 0.3218 T22: 0.1046 REMARK 3 T33: 0.1664 T12: 0.0136 REMARK 3 T13: -0.0111 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.9664 L22: 1.4694 REMARK 3 L33: 0.9132 L12: 0.3019 REMARK 3 L13: 0.1853 L23: 0.2632 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.1257 S13: -0.1880 REMARK 3 S21: 0.1669 S22: -0.0275 S23: -0.1385 REMARK 3 S31: 0.2080 S32: 0.0247 S33: 0.0047 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 179:220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7338 44.3445 -23.7799 REMARK 3 T TENSOR REMARK 3 T11: 0.2990 T22: 0.1438 REMARK 3 T33: 0.1771 T12: 0.0078 REMARK 3 T13: 0.0158 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.1554 L22: 1.3138 REMARK 3 L33: 0.7482 L12: -0.0988 REMARK 3 L13: 0.5126 L23: -0.0304 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: 0.0819 S13: 0.0492 REMARK 3 S21: -0.0438 S22: -0.0054 S23: -0.1367 REMARK 3 S31: -0.1286 S32: 0.1755 S33: 0.0130 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 221:280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4955 39.6240 -19.8655 REMARK 3 T TENSOR REMARK 3 T11: 0.3167 T22: 0.1303 REMARK 3 T33: 0.1499 T12: 0.0004 REMARK 3 T13: -0.0089 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.5227 L22: 1.4319 REMARK 3 L33: 0.6521 L12: 0.0209 REMARK 3 L13: 0.0272 L23: 0.2461 REMARK 3 S TENSOR REMARK 3 S11: 0.0467 S12: -0.0020 S13: -0.0603 REMARK 3 S21: 0.1077 S22: -0.0409 S23: -0.0627 REMARK 3 S31: 0.0342 S32: 0.0070 S33: -0.0073 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NDJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000083066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 150.0 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39983 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M MONOSODIUM PHOSPHATE, 1.2 M REMARK 280 DIPOTASSIUM PHOSPHATE, 0.1 M SODIUM ACETATE, PH 4.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z+1/2 REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.09500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.09500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.09500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.09500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -80.19000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 377 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 514 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LEU A 281 REMARK 465 GLY A 282 REMARK 465 MET A 283 REMARK 465 ASP A 284 REMARK 465 GLU A 285 REMARK 465 LEU A 286 REMARK 465 TYR A 287 REMARK 465 LYS A 288 REMARK 465 GLY A 289 REMARK 465 GLY A 290 REMARK 465 HIS A 291 REMARK 465 HIS A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 434 O HOH A 442 1.89 REMARK 500 O HOH A 543 O HOH A 631 1.92 REMARK 500 O HOH A 417 O HOH A 561 1.94 REMARK 500 O HOH A 302 O HOH A 459 1.95 REMARK 500 O HOH A 405 O HOH A 545 1.95 REMARK 500 NH1 ARG A 218 O HOH A 414 1.99 REMARK 500 O HOH A 445 O HOH A 588 2.00 REMARK 500 O HOH A 565 O HOH A 630 2.02 REMARK 500 NZ LYS A 93 O HOH A 376 2.03 REMARK 500 O HOH A 471 O HOH A 547 2.08 REMARK 500 NH1 ARG A 123 O HOH A 331 2.08 REMARK 500 O HOH A 445 O HOH A 571 2.11 REMARK 500 O HOH A 453 O HOH A 522 2.13 REMARK 500 O GLU A 2 O HOH A 458 2.15 REMARK 500 OD2 ASP A 247 O HOH A 333 2.17 REMARK 500 OH TYR A 28 O HOH A 593 2.18 REMARK 500 O HOH A 333 O HOH A 541 2.18 REMARK 500 O GLY A 34 O HOH A 427 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 153 -157.72 -155.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 365 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 533 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH A 574 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 607 DISTANCE = 6.92 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NDK RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CRYSTALLIZED SEQUENCE REPRESENTS A FUSED PROTEIN. THE N- REMARK 999 TERMINAL SEQUENCE, WHICH IS COMPUTATIONALLY DESIGNED, IS BASED ON REMARK 999 THE WILD-TYPE PROTEIN ENGRAILED HOMEODOMAIN (UNIPROT P02836). THE REMARK 999 COMPUTATIONAL DESIGN PROCESS IS PURELY PHYSICAL-BASED WITHOUT USING REMARK 999 ANY DATABASE ALIGNMENTS DBREF 4NDJ A 0 51 PDB 4NDJ 4NDJ 0 51 DBREF 4NDJ A 52 288 UNP U6GSR1 U6GSR1_EIMAC 1 239 SEQADV 4NDJ MET A 0 PDB INITIATING METHIONINE SEQADV 4NDJ LEU A 98 UNP U6GSR1 PHE 47 SEE REMARK 999 SEQADV 4NDJ LEU A 116 UNP U6GSR1 PHE 65 SEE REMARK 999 SEQADV 4NDJ CR2 A 117 UNP U6GSR1 GLY 66 CHROMOPHORE SEQADV 4NDJ CR2 A 117 UNP U6GSR1 TYR 67 CHROMOPHORE SEQADV 4NDJ CR2 A 117 UNP U6GSR1 GLY 68 CHROMOPHORE SEQADV 4NDJ GLN A 119 UNP U6GSR1 MET 70 SEE REMARK 999 SEQADV 4NDJ THR A 203 UNP U6GSR1 MET 154 SEE REMARK 999 SEQADV 4NDJ ALA A 213 UNP U6GSR1 VAL 164 SEE REMARK 999 SEQADV 4NDJ GLY A 225 UNP U6GSR1 SER 176 SEE REMARK 999 SEQADV 4NDJ LYS A 256 UNP U6GSR1 ALA 207 SEE REMARK 999 SEQADV 4NDJ GLY A 289 UNP U6GSR1 EXPRESSION TAG SEQADV 4NDJ GLY A 290 UNP U6GSR1 EXPRESSION TAG SEQADV 4NDJ HIS A 291 UNP U6GSR1 EXPRESSION TAG SEQADV 4NDJ HIS A 292 UNP U6GSR1 EXPRESSION TAG SEQADV 4NDJ HIS A 293 UNP U6GSR1 EXPRESSION TAG SEQADV 4NDJ HIS A 294 UNP U6GSR1 EXPRESSION TAG SEQADV 4NDJ HIS A 295 UNP U6GSR1 EXPRESSION TAG SEQADV 4NDJ HIS A 296 UNP U6GSR1 EXPRESSION TAG SEQRES 1 A 297 MET THR GLU PHE SER GLU GLU GLN LYS LYS ALA LEU ASP SEQRES 2 A 297 LEU ALA PHE TYR PHE ASP ARG ARG LEU THR GLU GLU TRP SEQRES 3 A 297 ARG ARG TYR LEU SER GLN ARG LEU GLY LEU ASN GLU GLU SEQRES 4 A 297 GLN ILE GLU ARG TRP PHE ARG ARG LYS GLU GLN GLN ILE SEQRES 5 A 297 MET VAL SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 6 A 297 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 7 A 297 LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR SEQRES 8 A 297 TYR GLY LYS LEU THR LEU LYS LEU ILE CYS THR THR GLY SEQRES 9 A 297 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU SEQRES 10 A 297 CR2 LEU GLN CYS PHE ALA ARG TYR PRO ASP HIS MET LYS SEQRES 11 A 297 GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 12 A 297 VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN SEQRES 13 A 297 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 14 A 297 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 15 A 297 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 16 A 297 TYR ASN SER HIS ASN VAL TYR ILE THR ALA ASP LYS GLN SEQRES 17 A 297 LYS ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN SEQRES 18 A 297 ILE GLU ASP GLY GLY VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 19 A 297 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 20 A 297 ASP ASN HIS TYR LEU SER TYR GLN SER LYS LEU SER LYS SEQRES 21 A 297 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 22 A 297 PHE VAL THR ALA ALA GLY ILE THR LEU GLY MET ASP GLU SEQRES 23 A 297 LEU TYR LYS GLY GLY HIS HIS HIS HIS HIS HIS MODRES 4NDJ CR2 A 117 GLY CHROMOPHORE HET CR2 A 117 19 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) FORMUL 1 CR2 C13 H13 N3 O4 FORMUL 2 HOH *333(H2 O) HELIX 1 1 SER A 4 GLY A 34 1 31 HELIX 2 2 ASN A 36 PHE A 60 1 25 HELIX 3 3 ALA A 89 TYR A 91 5 3 HELIX 4 4 PRO A 108 VAL A 113 5 6 HELIX 5 5 LEU A 118 ALA A 122 5 5 HELIX 6 6 PRO A 125 HIS A 131 5 7 HELIX 7 7 ASP A 132 ALA A 137 1 6 HELIX 8 8 LYS A 206 ASN A 209 5 4 SHEET 1 A12 VAL A 64 VAL A 74 0 SHEET 2 A12 HIS A 77 ASP A 88 -1 O PHE A 79 N GLY A 72 SHEET 3 A12 LYS A 93 CYS A 100 -1 O LYS A 93 N ASP A 88 SHEET 4 A12 HIS A 267 ALA A 277 -1 O MET A 268 N LEU A 98 SHEET 5 A12 HIS A 249 SER A 258 -1 N SER A 252 O THR A 275 SHEET 6 A12 HIS A 198 ASP A 205 -1 N HIS A 198 O TYR A 253 SHEET 7 A12 GLY A 210 ASN A 220 -1 O GLY A 210 N ASP A 205 SHEET 8 A12 VAL A 226 PRO A 237 -1 O GLN A 227 N HIS A 219 SHEET 9 A12 TYR A 142 PHE A 150 -1 N VAL A 143 O THR A 236 SHEET 10 A12 ASN A 155 GLU A 165 -1 O TYR A 156 N ILE A 148 SHEET 11 A12 THR A 168 ILE A 178 -1 O VAL A 170 N LYS A 163 SHEET 12 A12 VAL A 64 VAL A 74 1 N ASP A 73 O GLY A 177 LINK C LEU A 116 N1 CR2 A 117 1555 1555 1.43 LINK C3 CR2 A 117 N LEU A 118 1555 1555 1.42 CISPEP 1 MET A 138 PRO A 139 0 2.82 CRYST1 104.420 104.420 80.190 90.00 90.00 90.00 P 42 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009577 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012470 0.00000