data_4NDL # _entry.id 4NDL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NDL pdb_00004ndl 10.2210/pdb4ndl/pdb RCSB RCSB083068 ? ? WWPDB D_1000083068 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-05 2 'Structure model' 1 1 2015-09-02 3 'Structure model' 1 2 2015-09-16 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NDL _pdbx_database_status.recvd_initial_deposition_date 2013-10-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mou, Y.' 1 'Huang, P.S.' 2 'Hsu, F.C.' 3 'Huang, S.J.' 4 'Mayo, S.L.' 5 # _citation.id primary _citation.title 'Computational design and experimental verification of a symmetric protein homodimer.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 112 _citation.page_first 10714 _citation.page_last 10719 _citation.year 2015 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26269568 _citation.pdbx_database_id_DOI 10.1073/pnas.1505072112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mou, Y.' 1 ? primary 'Huang, P.S.' 2 ? primary 'Hsu, F.C.' 3 ? primary 'Huang, S.J.' 4 ? primary 'Mayo, S.L.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ENH-c2b, computational designed homodimer' 8848.906 3 ? ? ? ? 2 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MGSSHHHHHHSSGLVPRGSHMTEFSEEQKKALDLAFYFDRRLTPEWRRYLSQRLGLNEEQIERWFRRKEQQI _entity_poly.pdbx_seq_one_letter_code_can MGSSHHHHHHSSGLVPRGSHMTEFSEEQKKALDLAFYFDRRLTPEWRRYLSQRLGLNEEQIERWFRRKEQQI _entity_poly.pdbx_strand_id B,A,C _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 THR n 1 23 GLU n 1 24 PHE n 1 25 SER n 1 26 GLU n 1 27 GLU n 1 28 GLN n 1 29 LYS n 1 30 LYS n 1 31 ALA n 1 32 LEU n 1 33 ASP n 1 34 LEU n 1 35 ALA n 1 36 PHE n 1 37 TYR n 1 38 PHE n 1 39 ASP n 1 40 ARG n 1 41 ARG n 1 42 LEU n 1 43 THR n 1 44 PRO n 1 45 GLU n 1 46 TRP n 1 47 ARG n 1 48 ARG n 1 49 TYR n 1 50 LEU n 1 51 SER n 1 52 GLN n 1 53 ARG n 1 54 LEU n 1 55 GLY n 1 56 LEU n 1 57 ASN n 1 58 GLU n 1 59 GLU n 1 60 GLN n 1 61 ILE n 1 62 GLU n 1 63 ARG n 1 64 TRP n 1 65 PHE n 1 66 ARG n 1 67 ARG n 1 68 LYS n 1 69 GLU n 1 70 GLN n 1 71 GLN n 1 72 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? B . n A 1 2 GLY 2 2 ? ? ? B . n A 1 3 SER 3 3 ? ? ? B . n A 1 4 SER 4 4 ? ? ? B . n A 1 5 HIS 5 5 ? ? ? B . n A 1 6 HIS 6 6 ? ? ? B . n A 1 7 HIS 7 7 ? ? ? B . n A 1 8 HIS 8 8 ? ? ? B . n A 1 9 HIS 9 9 ? ? ? B . n A 1 10 HIS 10 10 ? ? ? B . n A 1 11 SER 11 11 ? ? ? B . n A 1 12 SER 12 12 ? ? ? B . n A 1 13 GLY 13 13 ? ? ? B . n A 1 14 LEU 14 14 ? ? ? B . n A 1 15 VAL 15 15 ? ? ? B . n A 1 16 PRO 16 16 ? ? ? B . n A 1 17 ARG 17 17 ? ? ? B . n A 1 18 GLY 18 18 ? ? ? B . n A 1 19 SER 19 19 ? ? ? B . n A 1 20 HIS 20 20 ? ? ? B . n A 1 21 MET 21 21 ? ? ? B . n A 1 22 THR 22 22 ? ? ? B . n A 1 23 GLU 23 23 ? ? ? B . n A 1 24 PHE 24 24 24 PHE PHE B . n A 1 25 SER 25 25 25 SER SER B . n A 1 26 GLU 26 26 26 GLU GLU B . n A 1 27 GLU 27 27 27 GLU GLU B . n A 1 28 GLN 28 28 28 GLN GLN B . n A 1 29 LYS 29 29 29 LYS LYS B . n A 1 30 LYS 30 30 30 LYS LYS B . n A 1 31 ALA 31 31 31 ALA ALA B . n A 1 32 LEU 32 32 32 LEU LEU B . n A 1 33 ASP 33 33 33 ASP ASP B . n A 1 34 LEU 34 34 34 LEU LEU B . n A 1 35 ALA 35 35 35 ALA ALA B . n A 1 36 PHE 36 36 36 PHE PHE B . n A 1 37 TYR 37 37 37 TYR TYR B . n A 1 38 PHE 38 38 38 PHE PHE B . n A 1 39 ASP 39 39 39 ASP ASP B . n A 1 40 ARG 40 40 40 ARG ARG B . n A 1 41 ARG 41 41 41 ARG ARG B . n A 1 42 LEU 42 42 42 LEU LEU B . n A 1 43 THR 43 43 43 THR THR B . n A 1 44 PRO 44 44 44 PRO PRO B . n A 1 45 GLU 45 45 45 GLU GLU B . n A 1 46 TRP 46 46 46 TRP TRP B . n A 1 47 ARG 47 47 47 ARG ARG B . n A 1 48 ARG 48 48 48 ARG ARG B . n A 1 49 TYR 49 49 49 TYR TYR B . n A 1 50 LEU 50 50 50 LEU LEU B . n A 1 51 SER 51 51 51 SER SER B . n A 1 52 GLN 52 52 52 GLN GLN B . n A 1 53 ARG 53 53 53 ARG ARG B . n A 1 54 LEU 54 54 54 LEU LEU B . n A 1 55 GLY 55 55 55 GLY GLY B . n A 1 56 LEU 56 56 56 LEU LEU B . n A 1 57 ASN 57 57 57 ASN ASN B . n A 1 58 GLU 58 58 58 GLU GLU B . n A 1 59 GLU 59 59 59 GLU GLU B . n A 1 60 GLN 60 60 60 GLN GLN B . n A 1 61 ILE 61 61 61 ILE ILE B . n A 1 62 GLU 62 62 62 GLU GLU B . n A 1 63 ARG 63 63 63 ARG ARG B . n A 1 64 TRP 64 64 64 TRP TRP B . n A 1 65 PHE 65 65 65 PHE PHE B . n A 1 66 ARG 66 66 66 ARG ARG B . n A 1 67 ARG 67 67 67 ARG ARG B . n A 1 68 LYS 68 68 68 LYS LYS B . n A 1 69 GLU 69 69 ? ? ? B . n A 1 70 GLN 70 70 ? ? ? B . n A 1 71 GLN 71 71 ? ? ? B . n A 1 72 ILE 72 72 ? ? ? B . n B 1 1 MET 1 1 ? ? ? A . n B 1 2 GLY 2 2 ? ? ? A . n B 1 3 SER 3 3 ? ? ? A . n B 1 4 SER 4 4 ? ? ? A . n B 1 5 HIS 5 5 ? ? ? A . n B 1 6 HIS 6 6 ? ? ? A . n B 1 7 HIS 7 7 ? ? ? A . n B 1 8 HIS 8 8 ? ? ? A . n B 1 9 HIS 9 9 ? ? ? A . n B 1 10 HIS 10 10 ? ? ? A . n B 1 11 SER 11 11 ? ? ? A . n B 1 12 SER 12 12 ? ? ? A . n B 1 13 GLY 13 13 ? ? ? A . n B 1 14 LEU 14 14 ? ? ? A . n B 1 15 VAL 15 15 ? ? ? A . n B 1 16 PRO 16 16 ? ? ? A . n B 1 17 ARG 17 17 ? ? ? A . n B 1 18 GLY 18 18 ? ? ? A . n B 1 19 SER 19 19 ? ? ? A . n B 1 20 HIS 20 20 ? ? ? A . n B 1 21 MET 21 21 ? ? ? A . n B 1 22 THR 22 22 ? ? ? A . n B 1 23 GLU 23 23 ? ? ? A . n B 1 24 PHE 24 24 24 PHE PHE A . n B 1 25 SER 25 25 25 SER SER A . n B 1 26 GLU 26 26 26 GLU GLU A . n B 1 27 GLU 27 27 27 GLU GLU A . n B 1 28 GLN 28 28 28 GLN GLN A . n B 1 29 LYS 29 29 29 LYS LYS A . n B 1 30 LYS 30 30 30 LYS LYS A . n B 1 31 ALA 31 31 31 ALA ALA A . n B 1 32 LEU 32 32 32 LEU LEU A . n B 1 33 ASP 33 33 33 ASP ASP A . n B 1 34 LEU 34 34 34 LEU LEU A . n B 1 35 ALA 35 35 35 ALA ALA A . n B 1 36 PHE 36 36 36 PHE PHE A . n B 1 37 TYR 37 37 37 TYR TYR A . n B 1 38 PHE 38 38 38 PHE PHE A . n B 1 39 ASP 39 39 39 ASP ASP A . n B 1 40 ARG 40 40 40 ARG ARG A . n B 1 41 ARG 41 41 41 ARG ARG A . n B 1 42 LEU 42 42 42 LEU LEU A . n B 1 43 THR 43 43 43 THR THR A . n B 1 44 PRO 44 44 44 PRO PRO A . n B 1 45 GLU 45 45 45 GLU GLU A . n B 1 46 TRP 46 46 46 TRP TRP A . n B 1 47 ARG 47 47 47 ARG ARG A . n B 1 48 ARG 48 48 48 ARG ARG A . n B 1 49 TYR 49 49 49 TYR TYR A . n B 1 50 LEU 50 50 50 LEU LEU A . n B 1 51 SER 51 51 51 SER SER A . n B 1 52 GLN 52 52 52 GLN GLN A . n B 1 53 ARG 53 53 53 ARG ARG A . n B 1 54 LEU 54 54 54 LEU LEU A . n B 1 55 GLY 55 55 55 GLY GLY A . n B 1 56 LEU 56 56 56 LEU LEU A . n B 1 57 ASN 57 57 57 ASN ASN A . n B 1 58 GLU 58 58 58 GLU GLU A . n B 1 59 GLU 59 59 59 GLU GLU A . n B 1 60 GLN 60 60 60 GLN GLN A . n B 1 61 ILE 61 61 61 ILE ILE A . n B 1 62 GLU 62 62 62 GLU GLU A . n B 1 63 ARG 63 63 63 ARG ARG A . n B 1 64 TRP 64 64 64 TRP TRP A . n B 1 65 PHE 65 65 65 PHE PHE A . n B 1 66 ARG 66 66 66 ARG ARG A . n B 1 67 ARG 67 67 67 ARG ARG A . n B 1 68 LYS 68 68 ? ? ? A . n B 1 69 GLU 69 69 ? ? ? A . n B 1 70 GLN 70 70 ? ? ? A . n B 1 71 GLN 71 71 ? ? ? A . n B 1 72 ILE 72 72 ? ? ? A . n C 1 1 MET 1 1 ? ? ? C . n C 1 2 GLY 2 2 ? ? ? C . n C 1 3 SER 3 3 ? ? ? C . n C 1 4 SER 4 4 ? ? ? C . n C 1 5 HIS 5 5 ? ? ? C . n C 1 6 HIS 6 6 ? ? ? C . n C 1 7 HIS 7 7 ? ? ? C . n C 1 8 HIS 8 8 ? ? ? C . n C 1 9 HIS 9 9 ? ? ? C . n C 1 10 HIS 10 10 ? ? ? C . n C 1 11 SER 11 11 ? ? ? C . n C 1 12 SER 12 12 ? ? ? C . n C 1 13 GLY 13 13 ? ? ? C . n C 1 14 LEU 14 14 ? ? ? C . n C 1 15 VAL 15 15 ? ? ? C . n C 1 16 PRO 16 16 ? ? ? C . n C 1 17 ARG 17 17 ? ? ? C . n C 1 18 GLY 18 18 ? ? ? C . n C 1 19 SER 19 19 ? ? ? C . n C 1 20 HIS 20 20 ? ? ? C . n C 1 21 MET 21 21 ? ? ? C . n C 1 22 THR 22 22 ? ? ? C . n C 1 23 GLU 23 23 ? ? ? C . n C 1 24 PHE 24 24 24 PHE PHE C . n C 1 25 SER 25 25 25 SER SER C . n C 1 26 GLU 26 26 26 GLU GLU C . n C 1 27 GLU 27 27 27 GLU GLU C . n C 1 28 GLN 28 28 28 GLN GLN C . n C 1 29 LYS 29 29 29 LYS LYS C . n C 1 30 LYS 30 30 30 LYS LYS C . n C 1 31 ALA 31 31 31 ALA ALA C . n C 1 32 LEU 32 32 32 LEU LEU C . n C 1 33 ASP 33 33 33 ASP ASP C . n C 1 34 LEU 34 34 34 LEU LEU C . n C 1 35 ALA 35 35 35 ALA ALA C . n C 1 36 PHE 36 36 36 PHE PHE C . n C 1 37 TYR 37 37 37 TYR TYR C . n C 1 38 PHE 38 38 38 PHE PHE C . n C 1 39 ASP 39 39 39 ASP ASP C . n C 1 40 ARG 40 40 40 ARG ARG C . n C 1 41 ARG 41 41 41 ARG ARG C . n C 1 42 LEU 42 42 42 LEU LEU C . n C 1 43 THR 43 43 43 THR THR C . n C 1 44 PRO 44 44 44 PRO PRO C . n C 1 45 GLU 45 45 45 GLU GLU C . n C 1 46 TRP 46 46 46 TRP TRP C . n C 1 47 ARG 47 47 47 ARG ARG C . n C 1 48 ARG 48 48 48 ARG ARG C . n C 1 49 TYR 49 49 49 TYR TYR C . n C 1 50 LEU 50 50 50 LEU LEU C . n C 1 51 SER 51 51 51 SER SER C . n C 1 52 GLN 52 52 52 GLN GLN C . n C 1 53 ARG 53 53 53 ARG ARG C . n C 1 54 LEU 54 54 54 LEU LEU C . n C 1 55 GLY 55 55 55 GLY GLY C . n C 1 56 LEU 56 56 56 LEU LEU C . n C 1 57 ASN 57 57 57 ASN ASN C . n C 1 58 GLU 58 58 58 GLU GLU C . n C 1 59 GLU 59 59 59 GLU GLU C . n C 1 60 GLN 60 60 60 GLN GLN C . n C 1 61 ILE 61 61 61 ILE ILE C . n C 1 62 GLU 62 62 62 GLU GLU C . n C 1 63 ARG 63 63 63 ARG ARG C . n C 1 64 TRP 64 64 64 TRP TRP C . n C 1 65 PHE 65 65 65 PHE PHE C . n C 1 66 ARG 66 66 66 ARG ARG C . n C 1 67 ARG 67 67 67 ARG ARG C . n C 1 68 LYS 68 68 68 LYS LYS C . n C 1 69 GLU 69 69 ? ? ? C . n C 1 70 GLN 70 70 ? ? ? C . n C 1 71 GLN 71 71 ? ? ? C . n C 1 72 ILE 72 72 ? ? ? C . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B GLU 27 ? CG ? A GLU 27 CG 2 1 Y 1 B GLU 27 ? CD ? A GLU 27 CD 3 1 Y 1 B GLU 27 ? OE1 ? A GLU 27 OE1 4 1 Y 1 B GLU 27 ? OE2 ? A GLU 27 OE2 5 1 Y 1 B LYS 30 ? CG ? A LYS 30 CG 6 1 Y 1 B LYS 30 ? CD ? A LYS 30 CD 7 1 Y 1 B LYS 30 ? CE ? A LYS 30 CE 8 1 Y 1 B LYS 30 ? NZ ? A LYS 30 NZ 9 1 Y 1 B ARG 41 ? CG ? A ARG 41 CG 10 1 Y 1 B ARG 41 ? CD ? A ARG 41 CD 11 1 Y 1 B ARG 41 ? NE ? A ARG 41 NE 12 1 Y 1 B ARG 41 ? CZ ? A ARG 41 CZ 13 1 Y 1 B ARG 41 ? NH1 ? A ARG 41 NH1 14 1 Y 1 B ARG 41 ? NH2 ? A ARG 41 NH2 15 1 Y 1 B GLU 45 ? CG ? A GLU 45 CG 16 1 Y 1 B GLU 45 ? CD ? A GLU 45 CD 17 1 Y 1 B GLU 45 ? OE1 ? A GLU 45 OE1 18 1 Y 1 B GLU 45 ? OE2 ? A GLU 45 OE2 19 1 Y 1 B ARG 48 ? CG ? A ARG 48 CG 20 1 Y 1 B ARG 48 ? CD ? A ARG 48 CD 21 1 Y 1 B ARG 48 ? NE ? A ARG 48 NE 22 1 Y 1 B ARG 48 ? CZ ? A ARG 48 CZ 23 1 Y 1 B ARG 48 ? NH1 ? A ARG 48 NH1 24 1 Y 1 B ARG 48 ? NH2 ? A ARG 48 NH2 25 1 Y 1 B GLU 58 ? CG ? A GLU 58 CG 26 1 Y 1 B GLU 58 ? CD ? A GLU 58 CD 27 1 Y 1 B GLU 58 ? OE1 ? A GLU 58 OE1 28 1 Y 1 B GLU 58 ? OE2 ? A GLU 58 OE2 29 1 Y 1 B GLU 59 ? CG ? A GLU 59 CG 30 1 Y 1 B GLU 59 ? CD ? A GLU 59 CD 31 1 Y 1 B GLU 59 ? OE1 ? A GLU 59 OE1 32 1 Y 1 B GLU 59 ? OE2 ? A GLU 59 OE2 33 1 Y 1 B GLU 62 ? CG ? A GLU 62 CG 34 1 Y 1 B GLU 62 ? CD ? A GLU 62 CD 35 1 Y 1 B GLU 62 ? OE1 ? A GLU 62 OE1 36 1 Y 1 B GLU 62 ? OE2 ? A GLU 62 OE2 37 1 Y 1 B ARG 63 ? CG ? A ARG 63 CG 38 1 Y 1 B ARG 63 ? CD ? A ARG 63 CD 39 1 Y 1 B ARG 63 ? NE ? A ARG 63 NE 40 1 Y 1 B ARG 63 ? CZ ? A ARG 63 CZ 41 1 Y 1 B ARG 63 ? NH1 ? A ARG 63 NH1 42 1 Y 1 B ARG 63 ? NH2 ? A ARG 63 NH2 43 1 Y 1 B ARG 66 ? CG ? A ARG 66 CG 44 1 Y 1 B ARG 66 ? CD ? A ARG 66 CD 45 1 Y 1 B ARG 66 ? NE ? A ARG 66 NE 46 1 Y 1 B ARG 66 ? CZ ? A ARG 66 CZ 47 1 Y 1 B ARG 66 ? NH1 ? A ARG 66 NH1 48 1 Y 1 B ARG 66 ? NH2 ? A ARG 66 NH2 49 1 Y 1 B ARG 67 ? CG ? A ARG 67 CG 50 1 Y 1 B ARG 67 ? CD ? A ARG 67 CD 51 1 Y 1 B ARG 67 ? NE ? A ARG 67 NE 52 1 Y 1 B ARG 67 ? CZ ? A ARG 67 CZ 53 1 Y 1 B ARG 67 ? NH1 ? A ARG 67 NH1 54 1 Y 1 B ARG 67 ? NH2 ? A ARG 67 NH2 55 1 Y 1 A GLU 27 ? CG ? B GLU 27 CG 56 1 Y 1 A GLU 27 ? CD ? B GLU 27 CD 57 1 Y 1 A GLU 27 ? OE1 ? B GLU 27 OE1 58 1 Y 1 A GLU 27 ? OE2 ? B GLU 27 OE2 59 1 Y 1 A ARG 40 ? CG ? B ARG 40 CG 60 1 Y 1 A ARG 40 ? CD ? B ARG 40 CD 61 1 Y 1 A ARG 40 ? NE ? B ARG 40 NE 62 1 Y 1 A ARG 40 ? CZ ? B ARG 40 CZ 63 1 Y 1 A ARG 40 ? NH1 ? B ARG 40 NH1 64 1 Y 1 A ARG 40 ? NH2 ? B ARG 40 NH2 65 1 Y 1 A GLU 45 ? CG ? B GLU 45 CG 66 1 Y 1 A GLU 45 ? CD ? B GLU 45 CD 67 1 Y 1 A GLU 45 ? OE1 ? B GLU 45 OE1 68 1 Y 1 A GLU 45 ? OE2 ? B GLU 45 OE2 69 1 Y 1 A ARG 47 ? CG ? B ARG 47 CG 70 1 Y 1 A ARG 47 ? CD ? B ARG 47 CD 71 1 Y 1 A ARG 47 ? NE ? B ARG 47 NE 72 1 Y 1 A ARG 47 ? CZ ? B ARG 47 CZ 73 1 Y 1 A ARG 47 ? NH1 ? B ARG 47 NH1 74 1 Y 1 A ARG 47 ? NH2 ? B ARG 47 NH2 75 1 Y 1 A ARG 48 ? CG ? B ARG 48 CG 76 1 Y 1 A ARG 48 ? CD ? B ARG 48 CD 77 1 Y 1 A ARG 48 ? NE ? B ARG 48 NE 78 1 Y 1 A ARG 48 ? CZ ? B ARG 48 CZ 79 1 Y 1 A ARG 48 ? NH1 ? B ARG 48 NH1 80 1 Y 1 A ARG 48 ? NH2 ? B ARG 48 NH2 81 1 Y 1 A GLN 52 ? CG ? B GLN 52 CG 82 1 Y 1 A GLN 52 ? CD ? B GLN 52 CD 83 1 Y 1 A GLN 52 ? OE1 ? B GLN 52 OE1 84 1 Y 1 A GLN 52 ? NE2 ? B GLN 52 NE2 85 1 Y 1 A GLU 59 ? CG ? B GLU 59 CG 86 1 Y 1 A GLU 59 ? CD ? B GLU 59 CD 87 1 Y 1 A GLU 59 ? OE1 ? B GLU 59 OE1 88 1 Y 1 A GLU 59 ? OE2 ? B GLU 59 OE2 89 1 Y 1 A GLU 62 ? CG ? B GLU 62 CG 90 1 Y 1 A GLU 62 ? CD ? B GLU 62 CD 91 1 Y 1 A GLU 62 ? OE1 ? B GLU 62 OE1 92 1 Y 1 A GLU 62 ? OE2 ? B GLU 62 OE2 93 1 Y 1 A ARG 63 ? CG ? B ARG 63 CG 94 1 Y 1 A ARG 63 ? CD ? B ARG 63 CD 95 1 Y 1 A ARG 63 ? NE ? B ARG 63 NE 96 1 Y 1 A ARG 63 ? CZ ? B ARG 63 CZ 97 1 Y 1 A ARG 63 ? NH1 ? B ARG 63 NH1 98 1 Y 1 A ARG 63 ? NH2 ? B ARG 63 NH2 99 1 Y 1 A ARG 66 ? CG ? B ARG 66 CG 100 1 Y 1 A ARG 66 ? CD ? B ARG 66 CD 101 1 Y 1 A ARG 66 ? NE ? B ARG 66 NE 102 1 Y 1 A ARG 66 ? CZ ? B ARG 66 CZ 103 1 Y 1 A ARG 66 ? NH1 ? B ARG 66 NH1 104 1 Y 1 A ARG 66 ? NH2 ? B ARG 66 NH2 105 1 Y 1 A ARG 67 ? CG ? B ARG 67 CG 106 1 Y 1 A ARG 67 ? CD ? B ARG 67 CD 107 1 Y 1 A ARG 67 ? NE ? B ARG 67 NE 108 1 Y 1 A ARG 67 ? CZ ? B ARG 67 CZ 109 1 Y 1 A ARG 67 ? NH1 ? B ARG 67 NH1 110 1 Y 1 A ARG 67 ? NH2 ? B ARG 67 NH2 111 1 Y 1 C PHE 24 ? CG ? C PHE 24 CG 112 1 Y 1 C PHE 24 ? CD1 ? C PHE 24 CD1 113 1 Y 1 C PHE 24 ? CD2 ? C PHE 24 CD2 114 1 Y 1 C PHE 24 ? CE1 ? C PHE 24 CE1 115 1 Y 1 C PHE 24 ? CE2 ? C PHE 24 CE2 116 1 Y 1 C PHE 24 ? CZ ? C PHE 24 CZ 117 1 Y 1 C GLU 27 ? CG ? C GLU 27 CG 118 1 Y 1 C GLU 27 ? CD ? C GLU 27 CD 119 1 Y 1 C GLU 27 ? OE1 ? C GLU 27 OE1 120 1 Y 1 C GLU 27 ? OE2 ? C GLU 27 OE2 121 1 Y 1 C GLU 45 ? CG ? C GLU 45 CG 122 1 Y 1 C GLU 45 ? CD ? C GLU 45 CD 123 1 Y 1 C GLU 45 ? OE1 ? C GLU 45 OE1 124 1 Y 1 C GLU 45 ? OE2 ? C GLU 45 OE2 125 1 Y 1 C ARG 48 ? CG ? C ARG 48 CG 126 1 Y 1 C ARG 48 ? CD ? C ARG 48 CD 127 1 Y 1 C ARG 48 ? NE ? C ARG 48 NE 128 1 Y 1 C ARG 48 ? CZ ? C ARG 48 CZ 129 1 Y 1 C ARG 48 ? NH1 ? C ARG 48 NH1 130 1 Y 1 C ARG 48 ? NH2 ? C ARG 48 NH2 131 1 Y 1 C SER 51 ? OG ? C SER 51 OG 132 1 Y 1 C GLN 52 ? CG ? C GLN 52 CG 133 1 Y 1 C GLN 52 ? CD ? C GLN 52 CD 134 1 Y 1 C GLN 52 ? OE1 ? C GLN 52 OE1 135 1 Y 1 C GLN 52 ? NE2 ? C GLN 52 NE2 136 1 Y 1 C GLU 59 ? CG ? C GLU 59 CG 137 1 Y 1 C GLU 59 ? CD ? C GLU 59 CD 138 1 Y 1 C GLU 59 ? OE1 ? C GLU 59 OE1 139 1 Y 1 C GLU 59 ? OE2 ? C GLU 59 OE2 140 1 Y 1 C ARG 63 ? CG ? C ARG 63 CG 141 1 Y 1 C ARG 63 ? CD ? C ARG 63 CD 142 1 Y 1 C ARG 63 ? NE ? C ARG 63 NE 143 1 Y 1 C ARG 63 ? CZ ? C ARG 63 CZ 144 1 Y 1 C ARG 63 ? NH1 ? C ARG 63 NH1 145 1 Y 1 C ARG 63 ? NH2 ? C ARG 63 NH2 146 1 Y 1 C ARG 66 ? CG ? C ARG 66 CG 147 1 Y 1 C ARG 66 ? CD ? C ARG 66 CD 148 1 Y 1 C ARG 66 ? NE ? C ARG 66 NE 149 1 Y 1 C ARG 66 ? CZ ? C ARG 66 CZ 150 1 Y 1 C ARG 66 ? NH1 ? C ARG 66 NH1 151 1 Y 1 C ARG 66 ? NH2 ? C ARG 66 NH2 152 1 Y 1 C ARG 67 ? CG ? C ARG 67 CG 153 1 Y 1 C ARG 67 ? CD ? C ARG 67 CD 154 1 Y 1 C ARG 67 ? NE ? C ARG 67 NE 155 1 Y 1 C ARG 67 ? CZ ? C ARG 67 CZ 156 1 Y 1 C ARG 67 ? NH1 ? C ARG 67 NH1 157 1 Y 1 C ARG 67 ? NH2 ? C ARG 67 NH2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 PHENIX phasing . ? 6 # _cell.entry_id 4NDL _cell.length_a 87.550 _cell.length_b 167.770 _cell.length_c 29.740 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NDL _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4NDL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 40.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1% w/v tryptone, 20% w/v polyethylene glycerol 3350, 0.05 M HEPES sodium, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 150.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2011-11-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSRRC BEAMLINE BL13C1' _diffrn_source.pdbx_synchrotron_site NSRRC _diffrn_source.pdbx_synchrotron_beamline BL13C1 _diffrn_source.pdbx_wavelength 0.915 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4NDL _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.600 _reflns.d_resolution_high 2.200 _reflns.number_obs 5697 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4NDL _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 2968 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.530 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.60 _refine.ls_d_res_high 3.50 _refine.ls_percent_reflns_obs 98.2 _refine.ls_R_factor_obs 0.313 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.312 _refine.ls_R_factor_R_free 0.3585 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.380 _refine.ls_number_reflns_R_free 130 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.460 _refine.pdbx_overall_phase_error 31.580 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1070 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 1071 _refine_hist.d_res_high 3.50 _refine_hist.d_res_low 24.60 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 1099 'X-RAY DIFFRACTION' ? f_angle_d 1.772 ? ? 1489 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.371 ? ? 372 'X-RAY DIFFRACTION' ? f_chiral_restr 0.075 ? ? 155 'X-RAY DIFFRACTION' ? f_plane_restr 0.009 ? ? 188 'X-RAY DIFFRACTION' ? # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _database_PDB_matrix.entry_id 4NDL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4NDL _struct.title 'Computational design and experimental verification of a symmetric homodimer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NDL _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'helix-turn-helix, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4NDL _struct_ref.pdbx_db_accession 4NDL _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4NDL B 1 ? 72 ? 4NDL 1 ? 72 ? 1 72 2 1 4NDL A 1 ? 72 ? 4NDL 1 ? 72 ? 1 72 3 1 4NDL C 1 ? 72 ? 4NDL 1 ? 72 ? 1 72 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D 2 1 B 3 1 C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 25 ? TYR A 37 ? SER B 25 TYR B 37 1 ? 13 HELX_P HELX_P2 2 THR A 43 ? GLY A 55 ? THR B 43 GLY B 55 1 ? 13 HELX_P HELX_P3 3 ASN A 57 ? ARG A 67 ? ASN B 57 ARG B 67 1 ? 11 HELX_P HELX_P4 4 SER B 25 ? TYR B 37 ? SER A 25 TYR A 37 1 ? 13 HELX_P HELX_P5 5 THR B 43 ? GLY B 55 ? THR A 43 GLY A 55 1 ? 13 HELX_P HELX_P6 6 ASN B 57 ? ARG B 66 ? ASN A 57 ARG A 66 1 ? 10 HELX_P HELX_P7 7 SER C 25 ? TYR C 37 ? SER C 25 TYR C 37 1 ? 13 HELX_P HELX_P8 8 THR C 43 ? LEU C 54 ? THR C 43 LEU C 54 1 ? 12 HELX_P HELX_P9 9 ASN C 57 ? ARG C 67 ? ASN C 57 ARG C 67 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 B ASN 57 ? ? HE21 B GLN 60 ? ? 1.53 2 1 OG B SER 51 ? ? O B LEU 56 ? ? 2.14 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB C ARG 53 ? ? CA C ARG 53 ? ? C C ARG 53 ? ? 98.38 110.40 -12.02 2.00 N 2 1 CG C ARG 53 ? ? CD C ARG 53 ? ? NE C ARG 53 ? ? 96.22 111.80 -15.58 2.10 N 3 1 NE C ARG 53 ? ? CZ C ARG 53 ? ? NH1 C ARG 53 ? ? 124.04 120.30 3.74 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE B 38 ? ? -123.81 -52.49 2 1 PHE A 38 ? ? -122.85 -53.57 3 1 PHE C 38 ? ? -124.65 -50.48 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id PHE _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 24 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.060 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET 1 ? A MET 1 2 1 Y 1 B GLY 2 ? A GLY 2 3 1 Y 1 B SER 3 ? A SER 3 4 1 Y 1 B SER 4 ? A SER 4 5 1 Y 1 B HIS 5 ? A HIS 5 6 1 Y 1 B HIS 6 ? A HIS 6 7 1 Y 1 B HIS 7 ? A HIS 7 8 1 Y 1 B HIS 8 ? A HIS 8 9 1 Y 1 B HIS 9 ? A HIS 9 10 1 Y 1 B HIS 10 ? A HIS 10 11 1 Y 1 B SER 11 ? A SER 11 12 1 Y 1 B SER 12 ? A SER 12 13 1 Y 1 B GLY 13 ? A GLY 13 14 1 Y 1 B LEU 14 ? A LEU 14 15 1 Y 1 B VAL 15 ? A VAL 15 16 1 Y 1 B PRO 16 ? A PRO 16 17 1 Y 1 B ARG 17 ? A ARG 17 18 1 Y 1 B GLY 18 ? A GLY 18 19 1 Y 1 B SER 19 ? A SER 19 20 1 Y 1 B HIS 20 ? A HIS 20 21 1 Y 1 B MET 21 ? A MET 21 22 1 Y 1 B THR 22 ? A THR 22 23 1 Y 1 B GLU 23 ? A GLU 23 24 1 Y 1 B GLU 69 ? A GLU 69 25 1 Y 1 B GLN 70 ? A GLN 70 26 1 Y 1 B GLN 71 ? A GLN 71 27 1 Y 1 B ILE 72 ? A ILE 72 28 1 Y 1 A MET 1 ? B MET 1 29 1 Y 1 A GLY 2 ? B GLY 2 30 1 Y 1 A SER 3 ? B SER 3 31 1 Y 1 A SER 4 ? B SER 4 32 1 Y 1 A HIS 5 ? B HIS 5 33 1 Y 1 A HIS 6 ? B HIS 6 34 1 Y 1 A HIS 7 ? B HIS 7 35 1 Y 1 A HIS 8 ? B HIS 8 36 1 Y 1 A HIS 9 ? B HIS 9 37 1 Y 1 A HIS 10 ? B HIS 10 38 1 Y 1 A SER 11 ? B SER 11 39 1 Y 1 A SER 12 ? B SER 12 40 1 Y 1 A GLY 13 ? B GLY 13 41 1 Y 1 A LEU 14 ? B LEU 14 42 1 Y 1 A VAL 15 ? B VAL 15 43 1 Y 1 A PRO 16 ? B PRO 16 44 1 Y 1 A ARG 17 ? B ARG 17 45 1 Y 1 A GLY 18 ? B GLY 18 46 1 Y 1 A SER 19 ? B SER 19 47 1 Y 1 A HIS 20 ? B HIS 20 48 1 Y 1 A MET 21 ? B MET 21 49 1 Y 1 A THR 22 ? B THR 22 50 1 Y 1 A GLU 23 ? B GLU 23 51 1 Y 1 A LYS 68 ? B LYS 68 52 1 Y 1 A GLU 69 ? B GLU 69 53 1 Y 1 A GLN 70 ? B GLN 70 54 1 Y 1 A GLN 71 ? B GLN 71 55 1 Y 1 A ILE 72 ? B ILE 72 56 1 Y 1 C MET 1 ? C MET 1 57 1 Y 1 C GLY 2 ? C GLY 2 58 1 Y 1 C SER 3 ? C SER 3 59 1 Y 1 C SER 4 ? C SER 4 60 1 Y 1 C HIS 5 ? C HIS 5 61 1 Y 1 C HIS 6 ? C HIS 6 62 1 Y 1 C HIS 7 ? C HIS 7 63 1 Y 1 C HIS 8 ? C HIS 8 64 1 Y 1 C HIS 9 ? C HIS 9 65 1 Y 1 C HIS 10 ? C HIS 10 66 1 Y 1 C SER 11 ? C SER 11 67 1 Y 1 C SER 12 ? C SER 12 68 1 Y 1 C GLY 13 ? C GLY 13 69 1 Y 1 C LEU 14 ? C LEU 14 70 1 Y 1 C VAL 15 ? C VAL 15 71 1 Y 1 C PRO 16 ? C PRO 16 72 1 Y 1 C ARG 17 ? C ARG 17 73 1 Y 1 C GLY 18 ? C GLY 18 74 1 Y 1 C SER 19 ? C SER 19 75 1 Y 1 C HIS 20 ? C HIS 20 76 1 Y 1 C MET 21 ? C MET 21 77 1 Y 1 C THR 22 ? C THR 22 78 1 Y 1 C GLU 23 ? C GLU 23 79 1 Y 1 C GLU 69 ? C GLU 69 80 1 Y 1 C GLN 70 ? C GLN 70 81 1 Y 1 C GLN 71 ? C GLN 71 82 1 Y 1 C ILE 72 ? C ILE 72 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 THR N N N N 290 THR CA C N S 291 THR C C N N 292 THR O O N N 293 THR CB C N R 294 THR OG1 O N N 295 THR CG2 C N N 296 THR OXT O N N 297 THR H H N N 298 THR H2 H N N 299 THR HA H N N 300 THR HB H N N 301 THR HG1 H N N 302 THR HG21 H N N 303 THR HG22 H N N 304 THR HG23 H N N 305 THR HXT H N N 306 TRP N N N N 307 TRP CA C N S 308 TRP C C N N 309 TRP O O N N 310 TRP CB C N N 311 TRP CG C Y N 312 TRP CD1 C Y N 313 TRP CD2 C Y N 314 TRP NE1 N Y N 315 TRP CE2 C Y N 316 TRP CE3 C Y N 317 TRP CZ2 C Y N 318 TRP CZ3 C Y N 319 TRP CH2 C Y N 320 TRP OXT O N N 321 TRP H H N N 322 TRP H2 H N N 323 TRP HA H N N 324 TRP HB2 H N N 325 TRP HB3 H N N 326 TRP HD1 H N N 327 TRP HE1 H N N 328 TRP HE3 H N N 329 TRP HZ2 H N N 330 TRP HZ3 H N N 331 TRP HH2 H N N 332 TRP HXT H N N 333 TYR N N N N 334 TYR CA C N S 335 TYR C C N N 336 TYR O O N N 337 TYR CB C N N 338 TYR CG C Y N 339 TYR CD1 C Y N 340 TYR CD2 C Y N 341 TYR CE1 C Y N 342 TYR CE2 C Y N 343 TYR CZ C Y N 344 TYR OH O N N 345 TYR OXT O N N 346 TYR H H N N 347 TYR H2 H N N 348 TYR HA H N N 349 TYR HB2 H N N 350 TYR HB3 H N N 351 TYR HD1 H N N 352 TYR HD2 H N N 353 TYR HE1 H N N 354 TYR HE2 H N N 355 TYR HH H N N 356 TYR HXT H N N 357 VAL N N N N 358 VAL CA C N S 359 VAL C C N N 360 VAL O O N N 361 VAL CB C N N 362 VAL CG1 C N N 363 VAL CG2 C N N 364 VAL OXT O N N 365 VAL H H N N 366 VAL H2 H N N 367 VAL HA H N N 368 VAL HB H N N 369 VAL HG11 H N N 370 VAL HG12 H N N 371 VAL HG13 H N N 372 VAL HG21 H N N 373 VAL HG22 H N N 374 VAL HG23 H N N 375 VAL HXT H N N 376 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # _atom_sites.entry_id 4NDL _atom_sites.fract_transf_matrix[1][1] 0.011422 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005961 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033625 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_