data_4NEL # _entry.id 4NEL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NEL pdb_00004nel 10.2210/pdb4nel/pdb RCSB RCSB083104 ? ? WWPDB D_1000083104 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4ICH 'Crystal structure of a putative TetR family transcriptional regulator from Saccharomonospora viridis DSM 43017' unspecified PDB 4JNN 'Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with benzamidine' unspecified PDB 4KWA 'Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with choline' unspecified TargetTrack MCSG-APC103670 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NEL _pdbx_database_status.recvd_initial_deposition_date 2013-10-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Halavaty, A.S.' 1 'Filippova, E.V.' 2 'Minasov, G.' 3 'Kiryukhina, O.' 4 'Shuvalova, L.' 5 'Endres, M.' 6 'Joachimiak, A.' 7 'Anderson, W.F.' 8 'Midwest Center for Structural Genomics (MCSG)' 9 # _citation.id primary _citation.title 'Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with N,N-dimethylmethanamine' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Halavaty, A.S.' 1 ? primary 'Filippova, E.V.' 2 ? primary 'Minasov, G.' 3 ? primary 'Kiryukhina, O.' 4 ? primary 'Shuvalova, L.' 5 ? primary 'Endres, M.' 6 ? primary 'Joachimiak, A.' 7 ? primary 'Anderson, W.F.' 8 ? primary 'Midwest Center for Structural Genomics (MCSG)' 9 ? # _cell.entry_id 4NEL _cell.length_a 41.864 _cell.length_b 109.240 _cell.length_c 73.878 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NEL _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator' 22338.117 1 ? ? ? ? 2 non-polymer syn N,N-dimethylmethanamine 59.110 1 ? ? ? ? 3 water nat water 18.015 31 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAELHTIADARERLV RLVELQLPTPGLLRDEWSVWLQVWTESTLNPKIRDLYNDAYDRWYQTIA(MSE)TIRTGQKQGVFRDQDADELATRLSAL IDGLGIQVLTGKRG(CME)SVDH(MSE)RQHLNDFIEHNIVE ; _entity_poly.pdbx_seq_one_letter_code_can ;SEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAELHTIADARERLV RLVELQLPTPGLLRDEWSVWLQVWTESTLNPKIRDLYNDAYDRWYQTIAMTIRTGQKQGVFRDQDADELATRLSALIDGL GIQVLTGKRGCSVDHMRQHLNDFIEHNIVE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier MCSG-APC103670 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLU n 1 3 ALA n 1 4 ARG n 1 5 ARG n 1 6 ARG n 1 7 ILE n 1 8 LEU n 1 9 GLU n 1 10 THR n 1 11 ALA n 1 12 TRP n 1 13 ARG n 1 14 LEU n 1 15 ILE n 1 16 ALA n 1 17 ARG n 1 18 ARG n 1 19 GLY n 1 20 TYR n 1 21 HIS n 1 22 ASN n 1 23 VAL n 1 24 ARG n 1 25 ILE n 1 26 HIS n 1 27 ASP n 1 28 ILE n 1 29 ALA n 1 30 SER n 1 31 GLU n 1 32 LEU n 1 33 GLY n 1 34 THR n 1 35 SER n 1 36 ASN n 1 37 ALA n 1 38 THR n 1 39 ILE n 1 40 HIS n 1 41 TYR n 1 42 HIS n 1 43 PHE n 1 44 PRO n 1 45 SER n 1 46 LYS n 1 47 LYS n 1 48 ASP n 1 49 ILE n 1 50 LEU n 1 51 LEU n 1 52 GLU n 1 53 ALA n 1 54 LEU n 1 55 ARG n 1 56 ARG n 1 57 ASN n 1 58 VAL n 1 59 LYS n 1 60 LEU n 1 61 ALA n 1 62 PHE n 1 63 ASP n 1 64 ARG n 1 65 GLN n 1 66 VAL n 1 67 ALA n 1 68 GLU n 1 69 LEU n 1 70 HIS n 1 71 THR n 1 72 ILE n 1 73 ALA n 1 74 ASP n 1 75 ALA n 1 76 ARG n 1 77 GLU n 1 78 ARG n 1 79 LEU n 1 80 VAL n 1 81 ARG n 1 82 LEU n 1 83 VAL n 1 84 GLU n 1 85 LEU n 1 86 GLN n 1 87 LEU n 1 88 PRO n 1 89 THR n 1 90 PRO n 1 91 GLY n 1 92 LEU n 1 93 LEU n 1 94 ARG n 1 95 ASP n 1 96 GLU n 1 97 TRP n 1 98 SER n 1 99 VAL n 1 100 TRP n 1 101 LEU n 1 102 GLN n 1 103 VAL n 1 104 TRP n 1 105 THR n 1 106 GLU n 1 107 SER n 1 108 THR n 1 109 LEU n 1 110 ASN n 1 111 PRO n 1 112 LYS n 1 113 ILE n 1 114 ARG n 1 115 ASP n 1 116 LEU n 1 117 TYR n 1 118 ASN n 1 119 ASP n 1 120 ALA n 1 121 TYR n 1 122 ASP n 1 123 ARG n 1 124 TRP n 1 125 TYR n 1 126 GLN n 1 127 THR n 1 128 ILE n 1 129 ALA n 1 130 MSE n 1 131 THR n 1 132 ILE n 1 133 ARG n 1 134 THR n 1 135 GLY n 1 136 GLN n 1 137 LYS n 1 138 GLN n 1 139 GLY n 1 140 VAL n 1 141 PHE n 1 142 ARG n 1 143 ASP n 1 144 GLN n 1 145 ASP n 1 146 ALA n 1 147 ASP n 1 148 GLU n 1 149 LEU n 1 150 ALA n 1 151 THR n 1 152 ARG n 1 153 LEU n 1 154 SER n 1 155 ALA n 1 156 LEU n 1 157 ILE n 1 158 ASP n 1 159 GLY n 1 160 LEU n 1 161 GLY n 1 162 ILE n 1 163 GLN n 1 164 VAL n 1 165 LEU n 1 166 THR n 1 167 GLY n 1 168 LYS n 1 169 ARG n 1 170 GLY n 1 171 CME n 1 172 SER n 1 173 VAL n 1 174 ASP n 1 175 HIS n 1 176 MSE n 1 177 ARG n 1 178 GLN n 1 179 HIS n 1 180 LEU n 1 181 ASN n 1 182 ASP n 1 183 PHE n 1 184 ILE n 1 185 GLU n 1 186 HIS n 1 187 ASN n 1 188 ILE n 1 189 VAL n 1 190 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Svir_16270 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 43017' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomonospora viridis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 471857 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG68 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C7MT25_SACVD _struct_ref.pdbx_db_accession C7MT25 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAELHTIADARERLV RLVELQLPTPGLLRDEWSVWLQVWTESTLNPKIRDLYNDAYDRWYQTIAMTIRTGQKQGVFRDQDADELATRLSALIDGL GIQVLTGKRGCSVDHMRQHLNDFIEHNIVE ; _struct_ref.pdbx_align_begin 95 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NEL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 190 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C7MT25 _struct_ref_seq.db_align_beg 95 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 284 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 95 _struct_ref_seq.pdbx_auth_seq_align_end 284 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CME 'L-peptide linking' n 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' ? 'C5 H11 N O3 S2' 197.276 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KEN non-polymer . N,N-dimethylmethanamine ? 'C3 H9 N' 59.110 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4NEL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_percent_sol 34.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;protein at 1.2 mg/mL in 10 mM Tris-HCl pH 8.3, 500 mM NaCl, 5 mM BME, 5 mM N,N-dimethylmethanamine, crystallization: The Classics II F12: 0.2 M NaCl, 0.1 M HEPES pH 7.5 25%(w/v) PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2013-10-21 _diffrn_detector.details 'Be lenses' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DIAMOND(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97872 # _reflns.entry_id 4NEL _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.05 _reflns.number_obs 11143 _reflns.number_all 11143 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.3 _reflns.B_iso_Wilson_estimate 41.3 _reflns.pdbx_redundancy 7.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.09 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.464 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy 7.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 541 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4NEL _refine.ls_number_reflns_obs 10449 _refine.ls_number_reflns_all 10449 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.86 _refine.ls_d_res_high 2.05 _refine.ls_percent_reflns_obs 99.63 _refine.ls_R_factor_obs 0.18801 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18492 _refine.ls_R_factor_R_free 0.25908 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 520 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.B_iso_mean 56.416 _refine.aniso_B[1][1] 2.37 _refine.aniso_B[2][2] -4.35 _refine.aniso_B[3][3] 1.98 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 4KWA _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.251 _refine.pdbx_overall_ESU_R_Free 0.214 _refine.overall_SU_ML 0.157 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 12.751 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1566 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 1601 _refine_hist.d_res_high 2.05 _refine_hist.d_res_low 26.86 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.014 0.019 ? 1646 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 1602 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.624 1.946 ? 2230 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.829 3.000 ? 3646 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 2.921 5.000 ? 197 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 29.144 22.159 ? 88 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 14.457 15.000 ? 284 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14.653 15.000 ? 23 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.092 0.200 ? 246 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.020 ? 1870 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.002 0.020 ? 423 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.050 _refine_ls_shell.d_res_low 2.103 _refine_ls_shell.number_reflns_R_work 769 _refine_ls_shell.R_factor_R_work 0.225 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.285 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 769 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4NEL _struct.title 'Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with N,N-dimethylmethanamine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NEL _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' _struct_keywords.text 'STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSCRIPTION REGULATOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? GLY A 19 ? SER A 95 GLY A 113 1 ? 19 HELX_P HELX_P2 2 TYR A 20 ? VAL A 23 ? TYR A 114 VAL A 117 5 ? 4 HELX_P HELX_P3 3 ARG A 24 ? GLY A 33 ? ARG A 118 GLY A 127 1 ? 10 HELX_P HELX_P4 4 SER A 35 ? PHE A 43 ? SER A 129 PHE A 137 1 ? 9 HELX_P HELX_P5 5 SER A 45 ? HIS A 70 ? SER A 139 HIS A 164 1 ? 26 HELX_P HELX_P6 6 ASP A 74 ? LEU A 87 ? ASP A 168 LEU A 181 1 ? 14 HELX_P HELX_P7 7 GLY A 91 ? THR A 108 ? GLY A 185 THR A 202 1 ? 18 HELX_P HELX_P8 8 ASN A 110 ? GLN A 138 ? ASN A 204 GLN A 232 1 ? 29 HELX_P HELX_P9 9 ASP A 145 ? GLY A 167 ? ASP A 239 GLY A 261 1 ? 23 HELX_P HELX_P10 10 SER A 172 ? ILE A 188 ? SER A 266 ILE A 282 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 129 C ? ? ? 1_555 A MSE 130 N ? ? A ALA 223 A MSE 224 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale2 covale both ? A MSE 130 C ? ? ? 1_555 A THR 131 N ? ? A MSE 224 A THR 225 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A GLY 170 C ? ? ? 1_555 A CME 171 N A ? A GLY 264 A CME 265 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale4 covale both ? A GLY 170 C ? ? ? 1_555 A CME 171 N B ? A GLY 264 A CME 265 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale5 covale both ? A CME 171 C A ? ? 1_555 A SER 172 N ? ? A CME 265 A SER 266 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale6 covale both ? A CME 171 C B ? ? 1_555 A SER 172 N ? ? A CME 265 A SER 266 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale both ? A HIS 175 C ? ? ? 1_555 A MSE 176 N ? ? A HIS 269 A MSE 270 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale8 covale both ? A MSE 176 C ? ? ? 1_555 A ARG 177 N ? ? A MSE 270 A ARG 271 1_555 ? ? ? ? ? ? ? 1.353 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id KEN _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE KEN A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLN A 86 ? GLN A 180 . ? 1_555 ? 2 AC1 3 TRP A 124 ? TRP A 218 . ? 1_555 ? 3 AC1 3 ASP A 158 ? ASP A 252 . ? 1_555 ? # _database_PDB_matrix.entry_id 4NEL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4NEL _atom_sites.fract_transf_matrix[1][1] 0.023887 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009154 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013536 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 95 95 SER SER A . n A 1 2 GLU 2 96 96 GLU GLU A . n A 1 3 ALA 3 97 97 ALA ALA A . n A 1 4 ARG 4 98 98 ARG ARG A . n A 1 5 ARG 5 99 99 ARG ARG A . n A 1 6 ARG 6 100 100 ARG ARG A . n A 1 7 ILE 7 101 101 ILE ILE A . n A 1 8 LEU 8 102 102 LEU LEU A . n A 1 9 GLU 9 103 103 GLU GLU A . n A 1 10 THR 10 104 104 THR THR A . n A 1 11 ALA 11 105 105 ALA ALA A . n A 1 12 TRP 12 106 106 TRP TRP A . n A 1 13 ARG 13 107 107 ARG ARG A . n A 1 14 LEU 14 108 108 LEU LEU A . n A 1 15 ILE 15 109 109 ILE ILE A . n A 1 16 ALA 16 110 110 ALA ALA A . n A 1 17 ARG 17 111 111 ARG ARG A . n A 1 18 ARG 18 112 112 ARG ARG A . n A 1 19 GLY 19 113 113 GLY GLY A . n A 1 20 TYR 20 114 114 TYR TYR A . n A 1 21 HIS 21 115 115 HIS HIS A . n A 1 22 ASN 22 116 116 ASN ASN A . n A 1 23 VAL 23 117 117 VAL VAL A . n A 1 24 ARG 24 118 118 ARG ARG A . n A 1 25 ILE 25 119 119 ILE ILE A . n A 1 26 HIS 26 120 120 HIS HIS A . n A 1 27 ASP 27 121 121 ASP ASP A . n A 1 28 ILE 28 122 122 ILE ILE A . n A 1 29 ALA 29 123 123 ALA ALA A . n A 1 30 SER 30 124 124 SER SER A . n A 1 31 GLU 31 125 125 GLU GLU A . n A 1 32 LEU 32 126 126 LEU LEU A . n A 1 33 GLY 33 127 127 GLY GLY A . n A 1 34 THR 34 128 128 THR THR A . n A 1 35 SER 35 129 129 SER SER A . n A 1 36 ASN 36 130 130 ASN ASN A . n A 1 37 ALA 37 131 131 ALA ALA A . n A 1 38 THR 38 132 132 THR THR A . n A 1 39 ILE 39 133 133 ILE ILE A . n A 1 40 HIS 40 134 134 HIS HIS A . n A 1 41 TYR 41 135 135 TYR TYR A . n A 1 42 HIS 42 136 136 HIS HIS A . n A 1 43 PHE 43 137 137 PHE PHE A . n A 1 44 PRO 44 138 138 PRO PRO A . n A 1 45 SER 45 139 139 SER SER A . n A 1 46 LYS 46 140 140 LYS LYS A . n A 1 47 LYS 47 141 141 LYS LYS A . n A 1 48 ASP 48 142 142 ASP ASP A . n A 1 49 ILE 49 143 143 ILE ILE A . n A 1 50 LEU 50 144 144 LEU LEU A . n A 1 51 LEU 51 145 145 LEU LEU A . n A 1 52 GLU 52 146 146 GLU GLU A . n A 1 53 ALA 53 147 147 ALA ALA A . n A 1 54 LEU 54 148 148 LEU LEU A . n A 1 55 ARG 55 149 149 ARG ARG A . n A 1 56 ARG 56 150 150 ARG ARG A . n A 1 57 ASN 57 151 151 ASN ASN A . n A 1 58 VAL 58 152 152 VAL VAL A . n A 1 59 LYS 59 153 153 LYS LYS A . n A 1 60 LEU 60 154 154 LEU LEU A . n A 1 61 ALA 61 155 155 ALA ALA A . n A 1 62 PHE 62 156 156 PHE PHE A . n A 1 63 ASP 63 157 157 ASP ASP A . n A 1 64 ARG 64 158 158 ARG ARG A . n A 1 65 GLN 65 159 159 GLN GLN A . n A 1 66 VAL 66 160 160 VAL VAL A . n A 1 67 ALA 67 161 161 ALA ALA A . n A 1 68 GLU 68 162 162 GLU GLU A . n A 1 69 LEU 69 163 163 LEU LEU A . n A 1 70 HIS 70 164 164 HIS HIS A . n A 1 71 THR 71 165 165 THR THR A . n A 1 72 ILE 72 166 166 ILE ILE A . n A 1 73 ALA 73 167 167 ALA ALA A . n A 1 74 ASP 74 168 168 ASP ASP A . n A 1 75 ALA 75 169 169 ALA ALA A . n A 1 76 ARG 76 170 170 ARG ARG A . n A 1 77 GLU 77 171 171 GLU GLU A . n A 1 78 ARG 78 172 172 ARG ARG A . n A 1 79 LEU 79 173 173 LEU LEU A . n A 1 80 VAL 80 174 174 VAL VAL A . n A 1 81 ARG 81 175 175 ARG ARG A . n A 1 82 LEU 82 176 176 LEU LEU A . n A 1 83 VAL 83 177 177 VAL VAL A . n A 1 84 GLU 84 178 178 GLU GLU A . n A 1 85 LEU 85 179 179 LEU LEU A . n A 1 86 GLN 86 180 180 GLN GLN A . n A 1 87 LEU 87 181 181 LEU LEU A . n A 1 88 PRO 88 182 182 PRO PRO A . n A 1 89 THR 89 183 183 THR THR A . n A 1 90 PRO 90 184 184 PRO PRO A . n A 1 91 GLY 91 185 185 GLY GLY A . n A 1 92 LEU 92 186 186 LEU LEU A . n A 1 93 LEU 93 187 187 LEU LEU A . n A 1 94 ARG 94 188 188 ARG ARG A . n A 1 95 ASP 95 189 189 ASP ASP A . n A 1 96 GLU 96 190 190 GLU GLU A . n A 1 97 TRP 97 191 191 TRP TRP A . n A 1 98 SER 98 192 192 SER SER A . n A 1 99 VAL 99 193 193 VAL VAL A . n A 1 100 TRP 100 194 194 TRP TRP A . n A 1 101 LEU 101 195 195 LEU LEU A . n A 1 102 GLN 102 196 196 GLN GLN A . n A 1 103 VAL 103 197 197 VAL VAL A . n A 1 104 TRP 104 198 198 TRP TRP A . n A 1 105 THR 105 199 199 THR THR A . n A 1 106 GLU 106 200 200 GLU GLU A . n A 1 107 SER 107 201 201 SER SER A . n A 1 108 THR 108 202 202 THR THR A . n A 1 109 LEU 109 203 203 LEU LEU A . n A 1 110 ASN 110 204 204 ASN ASN A . n A 1 111 PRO 111 205 205 PRO PRO A . n A 1 112 LYS 112 206 206 LYS LYS A . n A 1 113 ILE 113 207 207 ILE ILE A . n A 1 114 ARG 114 208 208 ARG ARG A . n A 1 115 ASP 115 209 209 ASP ASP A . n A 1 116 LEU 116 210 210 LEU LEU A . n A 1 117 TYR 117 211 211 TYR TYR A . n A 1 118 ASN 118 212 212 ASN ASN A . n A 1 119 ASP 119 213 213 ASP ASP A . n A 1 120 ALA 120 214 214 ALA ALA A . n A 1 121 TYR 121 215 215 TYR TYR A . n A 1 122 ASP 122 216 216 ASP ASP A . n A 1 123 ARG 123 217 217 ARG ARG A . n A 1 124 TRP 124 218 218 TRP TRP A . n A 1 125 TYR 125 219 219 TYR TYR A . n A 1 126 GLN 126 220 220 GLN GLN A . n A 1 127 THR 127 221 221 THR THR A . n A 1 128 ILE 128 222 222 ILE ILE A . n A 1 129 ALA 129 223 223 ALA ALA A . n A 1 130 MSE 130 224 224 MSE MSE A . n A 1 131 THR 131 225 225 THR THR A . n A 1 132 ILE 132 226 226 ILE ILE A . n A 1 133 ARG 133 227 227 ARG ARG A . n A 1 134 THR 134 228 228 THR THR A . n A 1 135 GLY 135 229 229 GLY GLY A . n A 1 136 GLN 136 230 230 GLN GLN A . n A 1 137 LYS 137 231 231 LYS LYS A . n A 1 138 GLN 138 232 232 GLN GLN A . n A 1 139 GLY 139 233 233 GLY GLY A . n A 1 140 VAL 140 234 234 VAL VAL A . n A 1 141 PHE 141 235 235 PHE PHE A . n A 1 142 ARG 142 236 236 ARG ARG A . n A 1 143 ASP 143 237 237 ASP ASP A . n A 1 144 GLN 144 238 238 GLN GLN A . n A 1 145 ASP 145 239 239 ASP ASP A . n A 1 146 ALA 146 240 240 ALA ALA A . n A 1 147 ASP 147 241 241 ASP ASP A . n A 1 148 GLU 148 242 242 GLU GLU A . n A 1 149 LEU 149 243 243 LEU LEU A . n A 1 150 ALA 150 244 244 ALA ALA A . n A 1 151 THR 151 245 245 THR THR A . n A 1 152 ARG 152 246 246 ARG ARG A . n A 1 153 LEU 153 247 247 LEU LEU A . n A 1 154 SER 154 248 248 SER SER A . n A 1 155 ALA 155 249 249 ALA ALA A . n A 1 156 LEU 156 250 250 LEU LEU A . n A 1 157 ILE 157 251 251 ILE ILE A . n A 1 158 ASP 158 252 252 ASP ASP A . n A 1 159 GLY 159 253 253 GLY GLY A . n A 1 160 LEU 160 254 254 LEU LEU A . n A 1 161 GLY 161 255 255 GLY GLY A . n A 1 162 ILE 162 256 256 ILE ILE A . n A 1 163 GLN 163 257 257 GLN GLN A . n A 1 164 VAL 164 258 258 VAL VAL A . n A 1 165 LEU 165 259 259 LEU LEU A . n A 1 166 THR 166 260 260 THR THR A . n A 1 167 GLY 167 261 261 GLY GLY A . n A 1 168 LYS 168 262 262 LYS LYS A . n A 1 169 ARG 169 263 263 ARG ARG A . n A 1 170 GLY 170 264 264 GLY GLY A . n A 1 171 CME 171 265 265 CME CME A . n A 1 172 SER 172 266 266 SER SER A . n A 1 173 VAL 173 267 267 VAL VAL A . n A 1 174 ASP 174 268 268 ASP ASP A . n A 1 175 HIS 175 269 269 HIS HIS A . n A 1 176 MSE 176 270 270 MSE MSE A . n A 1 177 ARG 177 271 271 ARG ARG A . n A 1 178 GLN 178 272 272 GLN GLN A . n A 1 179 HIS 179 273 273 HIS HIS A . n A 1 180 LEU 180 274 274 LEU LEU A . n A 1 181 ASN 181 275 275 ASN ASN A . n A 1 182 ASP 182 276 276 ASP ASP A . n A 1 183 PHE 183 277 277 PHE PHE A . n A 1 184 ILE 184 278 278 ILE ILE A . n A 1 185 GLU 185 279 279 GLU GLU A . n A 1 186 HIS 186 280 280 HIS HIS A . n A 1 187 ASN 187 281 281 ASN ASN A . n A 1 188 ILE 188 282 282 ILE ILE A . n A 1 189 VAL 189 283 283 VAL VAL A . n A 1 190 GLU 190 284 284 GLU GLU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KEN 1 301 1 KEN KEN A . C 3 HOH 1 401 2 HOH HOH A . C 3 HOH 2 402 3 HOH HOH A . C 3 HOH 3 403 4 HOH HOH A . C 3 HOH 4 404 5 HOH HOH A . C 3 HOH 5 405 6 HOH HOH A . C 3 HOH 6 406 7 HOH HOH A . C 3 HOH 7 407 8 HOH HOH A . C 3 HOH 8 408 10 HOH HOH A . C 3 HOH 9 409 11 HOH HOH A . C 3 HOH 10 410 12 HOH HOH A . C 3 HOH 11 411 13 HOH HOH A . C 3 HOH 12 412 14 HOH HOH A . C 3 HOH 13 413 15 HOH HOH A . C 3 HOH 14 414 16 HOH HOH A . C 3 HOH 15 415 17 HOH HOH A . C 3 HOH 16 416 18 HOH HOH A . C 3 HOH 17 417 19 HOH HOH A . C 3 HOH 18 418 20 HOH HOH A . C 3 HOH 19 419 21 HOH HOH A . C 3 HOH 20 420 22 HOH HOH A . C 3 HOH 21 421 23 HOH HOH A . C 3 HOH 22 422 24 HOH HOH A . C 3 HOH 23 423 25 HOH HOH A . C 3 HOH 24 424 26 HOH HOH A . C 3 HOH 25 425 27 HOH HOH A . C 3 HOH 26 426 28 HOH HOH A . C 3 HOH 27 427 29 HOH HOH A . C 3 HOH 28 428 30 HOH HOH A . C 3 HOH 29 429 31 HOH HOH A . C 3 HOH 30 430 32 HOH HOH A . C 3 HOH 31 431 33 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 130 A MSE 224 ? MET SELENOMETHIONINE 2 A CME 171 A CME 265 ? CYS 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' 3 A MSE 176 A MSE 270 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3240 ? 1 MORE -14 ? 1 'SSA (A^2)' 16820 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 36.9390000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 415 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-04 2 'Structure model' 1 1 2013-12-11 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-09-20 5 'Structure model' 1 4 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 8 5 'Structure model' '_chem_comp_atom.atom_id' 9 5 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -11.7321 5.6318 7.8862 0.1013 0.2144 0.0340 -0.0072 0.0061 0.0075 4.2297 6.1327 2.4872 -2.0485 1.1599 -1.0862 0.1546 -0.0118 0.1528 -0.1254 -0.1846 0.2777 -0.2371 -0.0860 0.0300 'X-RAY DIFFRACTION' 2 ? refined -15.3958 -15.0751 10.1407 0.0363 0.2661 0.1214 -0.0169 0.0016 -0.0301 0.9725 11.0826 2.0749 -0.1027 -0.1624 3.4308 0.1398 0.1671 -0.0743 -0.1397 -0.3258 0.6854 -0.0638 -0.2819 0.1859 'X-RAY DIFFRACTION' 3 ? refined -5.3861 -10.3104 12.6581 0.0188 0.2143 0.0517 -0.0075 0.0222 0.0472 2.0743 4.9587 11.7935 -0.2991 0.2894 3.9938 -0.0672 -0.0329 0.0398 0.0324 -0.0716 0.0546 0.0800 0.0009 0.1387 'X-RAY DIFFRACTION' 4 ? refined -15.0689 -22.1409 18.9916 0.0100 0.3690 0.3055 -0.0140 0.0231 -0.0317 0.5259 15.4134 3.6995 1.1695 -0.4613 4.9431 0.0542 -0.1118 -0.0540 0.0396 -0.3166 0.5460 -0.0983 -0.3227 0.2624 'X-RAY DIFFRACTION' 5 ? refined -1.7454 -26.7997 12.7997 0.0319 0.2736 0.1475 0.0201 0.0366 0.0024 3.0802 5.8984 4.6251 0.5836 -0.2947 -1.2367 0.0406 -0.0120 -0.4246 -0.2519 -0.1102 -0.1352 -0.0004 0.2014 0.0697 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 95 ? ? A 136 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 137 ? ? A 179 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 180 ? ? A 204 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 205 ? ? A 235 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 236 ? ? A 284 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' Max ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0029 ? 3 HKL-3000 'data reduction' . ? 4 HKL-3000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 4NEL _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'PROTEIN WAS PROTEOLIZED DURING CRYSTALLIZATION EXPERIMENT. THE REPORTED SEQUENCE IS THE ONE OBSERVED IN THE STRUCTURE.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 203 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -128.38 _pdbx_validate_torsion.psi -52.84 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CME N N N N 74 CME CA C N R 75 CME CB C N N 76 CME SG S N N 77 CME SD S N N 78 CME CE C N N 79 CME CZ C N N 80 CME OH O N N 81 CME C C N N 82 CME O O N N 83 CME OXT O N N 84 CME H H N N 85 CME H2 H N N 86 CME HA H N N 87 CME HB2 H N N 88 CME HB3 H N N 89 CME HE2 H N N 90 CME HE3 H N N 91 CME HZ2 H N N 92 CME HZ3 H N N 93 CME HH H N N 94 CME HXT H N N 95 GLN N N N N 96 GLN CA C N S 97 GLN C C N N 98 GLN O O N N 99 GLN CB C N N 100 GLN CG C N N 101 GLN CD C N N 102 GLN OE1 O N N 103 GLN NE2 N N N 104 GLN OXT O N N 105 GLN H H N N 106 GLN H2 H N N 107 GLN HA H N N 108 GLN HB2 H N N 109 GLN HB3 H N N 110 GLN HG2 H N N 111 GLN HG3 H N N 112 GLN HE21 H N N 113 GLN HE22 H N N 114 GLN HXT H N N 115 GLU N N N N 116 GLU CA C N S 117 GLU C C N N 118 GLU O O N N 119 GLU CB C N N 120 GLU CG C N N 121 GLU CD C N N 122 GLU OE1 O N N 123 GLU OE2 O N N 124 GLU OXT O N N 125 GLU H H N N 126 GLU H2 H N N 127 GLU HA H N N 128 GLU HB2 H N N 129 GLU HB3 H N N 130 GLU HG2 H N N 131 GLU HG3 H N N 132 GLU HE2 H N N 133 GLU HXT H N N 134 GLY N N N N 135 GLY CA C N N 136 GLY C C N N 137 GLY O O N N 138 GLY OXT O N N 139 GLY H H N N 140 GLY H2 H N N 141 GLY HA2 H N N 142 GLY HA3 H N N 143 GLY HXT H N N 144 HIS N N N N 145 HIS CA C N S 146 HIS C C N N 147 HIS O O N N 148 HIS CB C N N 149 HIS CG C Y N 150 HIS ND1 N Y N 151 HIS CD2 C Y N 152 HIS CE1 C Y N 153 HIS NE2 N Y N 154 HIS OXT O N N 155 HIS H H N N 156 HIS H2 H N N 157 HIS HA H N N 158 HIS HB2 H N N 159 HIS HB3 H N N 160 HIS HD1 H N N 161 HIS HD2 H N N 162 HIS HE1 H N N 163 HIS HE2 H N N 164 HIS HXT H N N 165 HOH O O N N 166 HOH H1 H N N 167 HOH H2 H N N 168 ILE N N N N 169 ILE CA C N S 170 ILE C C N N 171 ILE O O N N 172 ILE CB C N S 173 ILE CG1 C N N 174 ILE CG2 C N N 175 ILE CD1 C N N 176 ILE OXT O N N 177 ILE H H N N 178 ILE H2 H N N 179 ILE HA H N N 180 ILE HB H N N 181 ILE HG12 H N N 182 ILE HG13 H N N 183 ILE HG21 H N N 184 ILE HG22 H N N 185 ILE HG23 H N N 186 ILE HD11 H N N 187 ILE HD12 H N N 188 ILE HD13 H N N 189 ILE HXT H N N 190 KEN CA1 C N N 191 KEN CB1 C N N 192 KEN CC1 C N N 193 KEN NE1 N N N 194 KEN HA1 H N N 195 KEN HA1A H N N 196 KEN HA1B H N N 197 KEN HB1 H N N 198 KEN HB1A H N N 199 KEN HB1B H N N 200 KEN HC1 H N N 201 KEN HC1A H N N 202 KEN HC1B H N N 203 LEU N N N N 204 LEU CA C N S 205 LEU C C N N 206 LEU O O N N 207 LEU CB C N N 208 LEU CG C N N 209 LEU CD1 C N N 210 LEU CD2 C N N 211 LEU OXT O N N 212 LEU H H N N 213 LEU H2 H N N 214 LEU HA H N N 215 LEU HB2 H N N 216 LEU HB3 H N N 217 LEU HG H N N 218 LEU HD11 H N N 219 LEU HD12 H N N 220 LEU HD13 H N N 221 LEU HD21 H N N 222 LEU HD22 H N N 223 LEU HD23 H N N 224 LEU HXT H N N 225 LYS N N N N 226 LYS CA C N S 227 LYS C C N N 228 LYS O O N N 229 LYS CB C N N 230 LYS CG C N N 231 LYS CD C N N 232 LYS CE C N N 233 LYS NZ N N N 234 LYS OXT O N N 235 LYS H H N N 236 LYS H2 H N N 237 LYS HA H N N 238 LYS HB2 H N N 239 LYS HB3 H N N 240 LYS HG2 H N N 241 LYS HG3 H N N 242 LYS HD2 H N N 243 LYS HD3 H N N 244 LYS HE2 H N N 245 LYS HE3 H N N 246 LYS HZ1 H N N 247 LYS HZ2 H N N 248 LYS HZ3 H N N 249 LYS HXT H N N 250 MSE N N N N 251 MSE CA C N S 252 MSE C C N N 253 MSE O O N N 254 MSE OXT O N N 255 MSE CB C N N 256 MSE CG C N N 257 MSE SE SE N N 258 MSE CE C N N 259 MSE H H N N 260 MSE H2 H N N 261 MSE HA H N N 262 MSE HXT H N N 263 MSE HB2 H N N 264 MSE HB3 H N N 265 MSE HG2 H N N 266 MSE HG3 H N N 267 MSE HE1 H N N 268 MSE HE2 H N N 269 MSE HE3 H N N 270 PHE N N N N 271 PHE CA C N S 272 PHE C C N N 273 PHE O O N N 274 PHE CB C N N 275 PHE CG C Y N 276 PHE CD1 C Y N 277 PHE CD2 C Y N 278 PHE CE1 C Y N 279 PHE CE2 C Y N 280 PHE CZ C Y N 281 PHE OXT O N N 282 PHE H H N N 283 PHE H2 H N N 284 PHE HA H N N 285 PHE HB2 H N N 286 PHE HB3 H N N 287 PHE HD1 H N N 288 PHE HD2 H N N 289 PHE HE1 H N N 290 PHE HE2 H N N 291 PHE HZ H N N 292 PHE HXT H N N 293 PRO N N N N 294 PRO CA C N S 295 PRO C C N N 296 PRO O O N N 297 PRO CB C N N 298 PRO CG C N N 299 PRO CD C N N 300 PRO OXT O N N 301 PRO H H N N 302 PRO HA H N N 303 PRO HB2 H N N 304 PRO HB3 H N N 305 PRO HG2 H N N 306 PRO HG3 H N N 307 PRO HD2 H N N 308 PRO HD3 H N N 309 PRO HXT H N N 310 SER N N N N 311 SER CA C N S 312 SER C C N N 313 SER O O N N 314 SER CB C N N 315 SER OG O N N 316 SER OXT O N N 317 SER H H N N 318 SER H2 H N N 319 SER HA H N N 320 SER HB2 H N N 321 SER HB3 H N N 322 SER HG H N N 323 SER HXT H N N 324 THR N N N N 325 THR CA C N S 326 THR C C N N 327 THR O O N N 328 THR CB C N R 329 THR OG1 O N N 330 THR CG2 C N N 331 THR OXT O N N 332 THR H H N N 333 THR H2 H N N 334 THR HA H N N 335 THR HB H N N 336 THR HG1 H N N 337 THR HG21 H N N 338 THR HG22 H N N 339 THR HG23 H N N 340 THR HXT H N N 341 TRP N N N N 342 TRP CA C N S 343 TRP C C N N 344 TRP O O N N 345 TRP CB C N N 346 TRP CG C Y N 347 TRP CD1 C Y N 348 TRP CD2 C Y N 349 TRP NE1 N Y N 350 TRP CE2 C Y N 351 TRP CE3 C Y N 352 TRP CZ2 C Y N 353 TRP CZ3 C Y N 354 TRP CH2 C Y N 355 TRP OXT O N N 356 TRP H H N N 357 TRP H2 H N N 358 TRP HA H N N 359 TRP HB2 H N N 360 TRP HB3 H N N 361 TRP HD1 H N N 362 TRP HE1 H N N 363 TRP HE3 H N N 364 TRP HZ2 H N N 365 TRP HZ3 H N N 366 TRP HH2 H N N 367 TRP HXT H N N 368 TYR N N N N 369 TYR CA C N S 370 TYR C C N N 371 TYR O O N N 372 TYR CB C N N 373 TYR CG C Y N 374 TYR CD1 C Y N 375 TYR CD2 C Y N 376 TYR CE1 C Y N 377 TYR CE2 C Y N 378 TYR CZ C Y N 379 TYR OH O N N 380 TYR OXT O N N 381 TYR H H N N 382 TYR H2 H N N 383 TYR HA H N N 384 TYR HB2 H N N 385 TYR HB3 H N N 386 TYR HD1 H N N 387 TYR HD2 H N N 388 TYR HE1 H N N 389 TYR HE2 H N N 390 TYR HH H N N 391 TYR HXT H N N 392 VAL N N N N 393 VAL CA C N S 394 VAL C C N N 395 VAL O O N N 396 VAL CB C N N 397 VAL CG1 C N N 398 VAL CG2 C N N 399 VAL OXT O N N 400 VAL H H N N 401 VAL H2 H N N 402 VAL HA H N N 403 VAL HB H N N 404 VAL HG11 H N N 405 VAL HG12 H N N 406 VAL HG13 H N N 407 VAL HG21 H N N 408 VAL HG22 H N N 409 VAL HG23 H N N 410 VAL HXT H N N 411 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CME N CA sing N N 70 CME N H sing N N 71 CME N H2 sing N N 72 CME CA CB sing N N 73 CME CA C sing N N 74 CME CA HA sing N N 75 CME CB SG sing N N 76 CME CB HB2 sing N N 77 CME CB HB3 sing N N 78 CME SG SD sing N N 79 CME SD CE sing N N 80 CME CE CZ sing N N 81 CME CE HE2 sing N N 82 CME CE HE3 sing N N 83 CME CZ OH sing N N 84 CME CZ HZ2 sing N N 85 CME CZ HZ3 sing N N 86 CME OH HH sing N N 87 CME C O doub N N 88 CME C OXT sing N N 89 CME OXT HXT sing N N 90 GLN N CA sing N N 91 GLN N H sing N N 92 GLN N H2 sing N N 93 GLN CA C sing N N 94 GLN CA CB sing N N 95 GLN CA HA sing N N 96 GLN C O doub N N 97 GLN C OXT sing N N 98 GLN CB CG sing N N 99 GLN CB HB2 sing N N 100 GLN CB HB3 sing N N 101 GLN CG CD sing N N 102 GLN CG HG2 sing N N 103 GLN CG HG3 sing N N 104 GLN CD OE1 doub N N 105 GLN CD NE2 sing N N 106 GLN NE2 HE21 sing N N 107 GLN NE2 HE22 sing N N 108 GLN OXT HXT sing N N 109 GLU N CA sing N N 110 GLU N H sing N N 111 GLU N H2 sing N N 112 GLU CA C sing N N 113 GLU CA CB sing N N 114 GLU CA HA sing N N 115 GLU C O doub N N 116 GLU C OXT sing N N 117 GLU CB CG sing N N 118 GLU CB HB2 sing N N 119 GLU CB HB3 sing N N 120 GLU CG CD sing N N 121 GLU CG HG2 sing N N 122 GLU CG HG3 sing N N 123 GLU CD OE1 doub N N 124 GLU CD OE2 sing N N 125 GLU OE2 HE2 sing N N 126 GLU OXT HXT sing N N 127 GLY N CA sing N N 128 GLY N H sing N N 129 GLY N H2 sing N N 130 GLY CA C sing N N 131 GLY CA HA2 sing N N 132 GLY CA HA3 sing N N 133 GLY C O doub N N 134 GLY C OXT sing N N 135 GLY OXT HXT sing N N 136 HIS N CA sing N N 137 HIS N H sing N N 138 HIS N H2 sing N N 139 HIS CA C sing N N 140 HIS CA CB sing N N 141 HIS CA HA sing N N 142 HIS C O doub N N 143 HIS C OXT sing N N 144 HIS CB CG sing N N 145 HIS CB HB2 sing N N 146 HIS CB HB3 sing N N 147 HIS CG ND1 sing Y N 148 HIS CG CD2 doub Y N 149 HIS ND1 CE1 doub Y N 150 HIS ND1 HD1 sing N N 151 HIS CD2 NE2 sing Y N 152 HIS CD2 HD2 sing N N 153 HIS CE1 NE2 sing Y N 154 HIS CE1 HE1 sing N N 155 HIS NE2 HE2 sing N N 156 HIS OXT HXT sing N N 157 HOH O H1 sing N N 158 HOH O H2 sing N N 159 ILE N CA sing N N 160 ILE N H sing N N 161 ILE N H2 sing N N 162 ILE CA C sing N N 163 ILE CA CB sing N N 164 ILE CA HA sing N N 165 ILE C O doub N N 166 ILE C OXT sing N N 167 ILE CB CG1 sing N N 168 ILE CB CG2 sing N N 169 ILE CB HB sing N N 170 ILE CG1 CD1 sing N N 171 ILE CG1 HG12 sing N N 172 ILE CG1 HG13 sing N N 173 ILE CG2 HG21 sing N N 174 ILE CG2 HG22 sing N N 175 ILE CG2 HG23 sing N N 176 ILE CD1 HD11 sing N N 177 ILE CD1 HD12 sing N N 178 ILE CD1 HD13 sing N N 179 ILE OXT HXT sing N N 180 KEN CA1 NE1 sing N N 181 KEN CA1 HA1 sing N N 182 KEN CA1 HA1A sing N N 183 KEN CA1 HA1B sing N N 184 KEN NE1 CB1 sing N N 185 KEN CB1 HB1 sing N N 186 KEN CB1 HB1A sing N N 187 KEN CB1 HB1B sing N N 188 KEN CC1 NE1 sing N N 189 KEN CC1 HC1 sing N N 190 KEN CC1 HC1A sing N N 191 KEN CC1 HC1B sing N N 192 LEU N CA sing N N 193 LEU N H sing N N 194 LEU N H2 sing N N 195 LEU CA C sing N N 196 LEU CA CB sing N N 197 LEU CA HA sing N N 198 LEU C O doub N N 199 LEU C OXT sing N N 200 LEU CB CG sing N N 201 LEU CB HB2 sing N N 202 LEU CB HB3 sing N N 203 LEU CG CD1 sing N N 204 LEU CG CD2 sing N N 205 LEU CG HG sing N N 206 LEU CD1 HD11 sing N N 207 LEU CD1 HD12 sing N N 208 LEU CD1 HD13 sing N N 209 LEU CD2 HD21 sing N N 210 LEU CD2 HD22 sing N N 211 LEU CD2 HD23 sing N N 212 LEU OXT HXT sing N N 213 LYS N CA sing N N 214 LYS N H sing N N 215 LYS N H2 sing N N 216 LYS CA C sing N N 217 LYS CA CB sing N N 218 LYS CA HA sing N N 219 LYS C O doub N N 220 LYS C OXT sing N N 221 LYS CB CG sing N N 222 LYS CB HB2 sing N N 223 LYS CB HB3 sing N N 224 LYS CG CD sing N N 225 LYS CG HG2 sing N N 226 LYS CG HG3 sing N N 227 LYS CD CE sing N N 228 LYS CD HD2 sing N N 229 LYS CD HD3 sing N N 230 LYS CE NZ sing N N 231 LYS CE HE2 sing N N 232 LYS CE HE3 sing N N 233 LYS NZ HZ1 sing N N 234 LYS NZ HZ2 sing N N 235 LYS NZ HZ3 sing N N 236 LYS OXT HXT sing N N 237 MSE N CA sing N N 238 MSE N H sing N N 239 MSE N H2 sing N N 240 MSE CA C sing N N 241 MSE CA CB sing N N 242 MSE CA HA sing N N 243 MSE C O doub N N 244 MSE C OXT sing N N 245 MSE OXT HXT sing N N 246 MSE CB CG sing N N 247 MSE CB HB2 sing N N 248 MSE CB HB3 sing N N 249 MSE CG SE sing N N 250 MSE CG HG2 sing N N 251 MSE CG HG3 sing N N 252 MSE SE CE sing N N 253 MSE CE HE1 sing N N 254 MSE CE HE2 sing N N 255 MSE CE HE3 sing N N 256 PHE N CA sing N N 257 PHE N H sing N N 258 PHE N H2 sing N N 259 PHE CA C sing N N 260 PHE CA CB sing N N 261 PHE CA HA sing N N 262 PHE C O doub N N 263 PHE C OXT sing N N 264 PHE CB CG sing N N 265 PHE CB HB2 sing N N 266 PHE CB HB3 sing N N 267 PHE CG CD1 doub Y N 268 PHE CG CD2 sing Y N 269 PHE CD1 CE1 sing Y N 270 PHE CD1 HD1 sing N N 271 PHE CD2 CE2 doub Y N 272 PHE CD2 HD2 sing N N 273 PHE CE1 CZ doub Y N 274 PHE CE1 HE1 sing N N 275 PHE CE2 CZ sing Y N 276 PHE CE2 HE2 sing N N 277 PHE CZ HZ sing N N 278 PHE OXT HXT sing N N 279 PRO N CA sing N N 280 PRO N CD sing N N 281 PRO N H sing N N 282 PRO CA C sing N N 283 PRO CA CB sing N N 284 PRO CA HA sing N N 285 PRO C O doub N N 286 PRO C OXT sing N N 287 PRO CB CG sing N N 288 PRO CB HB2 sing N N 289 PRO CB HB3 sing N N 290 PRO CG CD sing N N 291 PRO CG HG2 sing N N 292 PRO CG HG3 sing N N 293 PRO CD HD2 sing N N 294 PRO CD HD3 sing N N 295 PRO OXT HXT sing N N 296 SER N CA sing N N 297 SER N H sing N N 298 SER N H2 sing N N 299 SER CA C sing N N 300 SER CA CB sing N N 301 SER CA HA sing N N 302 SER C O doub N N 303 SER C OXT sing N N 304 SER CB OG sing N N 305 SER CB HB2 sing N N 306 SER CB HB3 sing N N 307 SER OG HG sing N N 308 SER OXT HXT sing N N 309 THR N CA sing N N 310 THR N H sing N N 311 THR N H2 sing N N 312 THR CA C sing N N 313 THR CA CB sing N N 314 THR CA HA sing N N 315 THR C O doub N N 316 THR C OXT sing N N 317 THR CB OG1 sing N N 318 THR CB CG2 sing N N 319 THR CB HB sing N N 320 THR OG1 HG1 sing N N 321 THR CG2 HG21 sing N N 322 THR CG2 HG22 sing N N 323 THR CG2 HG23 sing N N 324 THR OXT HXT sing N N 325 TRP N CA sing N N 326 TRP N H sing N N 327 TRP N H2 sing N N 328 TRP CA C sing N N 329 TRP CA CB sing N N 330 TRP CA HA sing N N 331 TRP C O doub N N 332 TRP C OXT sing N N 333 TRP CB CG sing N N 334 TRP CB HB2 sing N N 335 TRP CB HB3 sing N N 336 TRP CG CD1 doub Y N 337 TRP CG CD2 sing Y N 338 TRP CD1 NE1 sing Y N 339 TRP CD1 HD1 sing N N 340 TRP CD2 CE2 doub Y N 341 TRP CD2 CE3 sing Y N 342 TRP NE1 CE2 sing Y N 343 TRP NE1 HE1 sing N N 344 TRP CE2 CZ2 sing Y N 345 TRP CE3 CZ3 doub Y N 346 TRP CE3 HE3 sing N N 347 TRP CZ2 CH2 doub Y N 348 TRP CZ2 HZ2 sing N N 349 TRP CZ3 CH2 sing Y N 350 TRP CZ3 HZ3 sing N N 351 TRP CH2 HH2 sing N N 352 TRP OXT HXT sing N N 353 TYR N CA sing N N 354 TYR N H sing N N 355 TYR N H2 sing N N 356 TYR CA C sing N N 357 TYR CA CB sing N N 358 TYR CA HA sing N N 359 TYR C O doub N N 360 TYR C OXT sing N N 361 TYR CB CG sing N N 362 TYR CB HB2 sing N N 363 TYR CB HB3 sing N N 364 TYR CG CD1 doub Y N 365 TYR CG CD2 sing Y N 366 TYR CD1 CE1 sing Y N 367 TYR CD1 HD1 sing N N 368 TYR CD2 CE2 doub Y N 369 TYR CD2 HD2 sing N N 370 TYR CE1 CZ doub Y N 371 TYR CE1 HE1 sing N N 372 TYR CE2 CZ sing Y N 373 TYR CE2 HE2 sing N N 374 TYR CZ OH sing N N 375 TYR OH HH sing N N 376 TYR OXT HXT sing N N 377 VAL N CA sing N N 378 VAL N H sing N N 379 VAL N H2 sing N N 380 VAL CA C sing N N 381 VAL CA CB sing N N 382 VAL CA HA sing N N 383 VAL C O doub N N 384 VAL C OXT sing N N 385 VAL CB CG1 sing N N 386 VAL CB CG2 sing N N 387 VAL CB HB sing N N 388 VAL CG1 HG11 sing N N 389 VAL CG1 HG12 sing N N 390 VAL CG1 HG13 sing N N 391 VAL CG2 HG21 sing N N 392 VAL CG2 HG22 sing N N 393 VAL CG2 HG23 sing N N 394 VAL OXT HXT sing N N 395 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 N,N-dimethylmethanamine KEN 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4KWA _pdbx_initial_refinement_model.details ? #