HEADER ISOMERASE 30-OCT-13 4NES TITLE CRYSTAL STRUCTURE OF METHANOCALDOCOCCUS JANNASCHII UDP-GLCNAC 2- TITLE 2 EPIMERASE IN COMPLEX WITH UDP-GLCNAC AND UDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-GLCNAC-2-EPIMERASE; COMPND 5 EC: 5.1.3.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: DSM 2661; SOURCE 5 GENE: WECB, MJ1504; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS UDP-GLYCOSYLTRANSFERASE/GLYCOGEN PHOSPHORYLASE FOLD, UDP-GLCNAC 2- KEYWDS 2 EPIMERASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.CHEN,C.S.YANG,C.H.HUANG,Y.CHEN REVDAT 3 09-OCT-24 4NES 1 REMARK SEQADV LINK REVDAT 2 17-JUN-15 4NES 1 JRNL REVDAT 1 23-APR-14 4NES 0 JRNL AUTH S.C.CHEN,C.H.HUANG,C.S.YANG,J.S.LIU,S.M.KUAN,Y.CHEN JRNL TITL CRYSTAL STRUCTURES OF THE ARCHAEAL UDP-GLCNAC 2-EPIMERASE JRNL TITL 2 FROM METHANOCALDOCOCCUS JANNASCHII REVEAL A CONFORMATIONAL JRNL TITL 3 CHANGE INDUCED BY UDP-GLCNAC. JRNL REF PROTEINS V. 82 1519 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 24470206 JRNL DOI 10.1002/PROT.24516 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 74650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.690 REMARK 3 FREE R VALUE TEST SET COUNT : 3860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.0046 - 4.3058 0.89 4649 119 0.2113 0.2002 REMARK 3 2 4.3058 - 3.4204 0.95 4913 141 0.1766 0.1825 REMARK 3 3 3.4204 - 2.9888 0.96 5042 128 0.1931 0.2000 REMARK 3 4 2.9888 - 2.7159 0.96 4969 133 0.1930 0.2196 REMARK 3 5 2.7159 - 2.5215 0.97 4979 138 0.1953 0.2694 REMARK 3 6 2.5215 - 2.3729 0.97 5056 147 0.1937 0.2040 REMARK 3 7 2.3729 - 2.2542 0.96 4980 144 0.1857 0.2297 REMARK 3 8 2.2542 - 2.1561 0.97 5033 139 0.1811 0.2475 REMARK 3 9 2.1561 - 2.0731 0.98 5048 136 0.1822 0.1899 REMARK 3 10 2.0731 - 2.0016 0.98 5117 144 0.1868 0.2088 REMARK 3 11 2.0016 - 1.9391 0.98 5050 136 0.1826 0.2188 REMARK 3 12 1.9391 - 1.8837 0.99 5140 148 0.1883 0.2167 REMARK 3 13 1.8837 - 1.8341 0.99 5179 124 0.1849 0.2148 REMARK 3 14 1.8341 - 1.7894 0.98 5127 138 0.1908 0.2696 REMARK 3 15 1.7894 - 1.7487 0.97 4985 161 0.1914 0.2310 REMARK 3 16 1.7487 - 1.7115 0.97 5041 135 0.1908 0.2117 REMARK 3 17 1.7115 - 1.6773 0.97 5007 133 0.1973 0.2275 REMARK 3 18 1.6773 - 1.6456 0.97 5038 117 0.2034 0.2364 REMARK 3 19 1.6456 - 1.6162 0.96 5010 156 0.2063 0.2389 REMARK 3 20 1.6162 - 1.5888 0.96 4967 122 0.2096 0.2249 REMARK 3 21 1.5888 - 1.5632 0.96 5005 145 0.2188 0.2688 REMARK 3 22 1.5632 - 1.5392 0.95 4941 157 0.2194 0.2549 REMARK 3 23 1.5392 - 1.5165 0.96 4985 119 0.2136 0.2117 REMARK 3 24 1.5165 - 1.4952 0.95 4951 134 0.2265 0.2245 REMARK 3 25 1.4952 - 1.4750 0.96 4936 151 0.2283 0.2682 REMARK 3 26 1.4750 - 1.4558 0.96 4946 156 0.2399 0.2618 REMARK 3 27 1.4558 - 1.4376 0.95 4967 124 0.2479 0.2849 REMARK 3 28 1.4376 - 1.4203 0.92 4771 135 0.2513 0.2664 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3011 REMARK 3 ANGLE : 1.241 4071 REMARK 3 CHIRALITY : 0.080 477 REMARK 3 PLANARITY : 0.005 510 REMARK 3 DIHEDRAL : 14.440 1158 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1:183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3282 26.0104 26.9811 REMARK 3 T TENSOR REMARK 3 T11: 0.0432 T22: 0.0511 REMARK 3 T33: 0.0508 T12: -0.0050 REMARK 3 T13: -0.0019 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.6226 L22: 0.3518 REMARK 3 L33: 0.1009 L12: -0.0292 REMARK 3 L13: -0.0879 L23: -0.0376 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: 0.0595 S13: -0.0368 REMARK 3 S21: 0.0114 S22: -0.0139 S23: -0.0129 REMARK 3 S31: 0.0275 S32: -0.0180 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 184:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2428 24.6899 46.4781 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.1226 REMARK 3 T33: 0.1079 T12: -0.0216 REMARK 3 T13: -0.0059 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.0202 L22: 0.1950 REMARK 3 L33: 0.0889 L12: 0.0015 REMARK 3 L13: -0.0125 L23: -0.0082 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: -0.1220 S13: -0.0175 REMARK 3 S21: 0.0738 S22: -0.0140 S23: 0.0567 REMARK 3 S31: 0.0354 S32: -0.0128 S33: -0.0009 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 215:364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6945 31.3091 47.1844 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.0713 REMARK 3 T33: 0.0412 T12: -0.0110 REMARK 3 T13: -0.0039 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3257 L22: 0.4275 REMARK 3 L33: 0.2662 L12: 0.1104 REMARK 3 L13: -0.1788 L23: 0.0308 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.0594 S13: 0.0152 REMARK 3 S21: 0.1490 S22: -0.0424 S23: -0.0052 REMARK 3 S31: -0.0453 S32: -0.0320 S33: 0.0062 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 4.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9638, 0.9789, 0.9791 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74655 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40MM TRIS-PROPANE, 60MM CITRIC ACID, REMARK 280 16% PEG 3350, PH 4.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.43450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.37150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.43450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.37150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 126.08226 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.23491 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 197 REMARK 465 ASP A 198 REMARK 465 LYS A 365 REMARK 465 TYR A 366 REMARK 465 LEU A 367 REMARK 465 GLU A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 148 O HOH A 828 1.82 REMARK 500 O HOH A 844 O HOH A 845 1.85 REMARK 500 OD1 ASN A 308 O HOH A 665 1.88 REMARK 500 O HOH A 642 O HOH A 798 1.93 REMARK 500 O HOH A 504 O HOH A 695 1.93 REMARK 500 O HOH A 620 O HOH A 890 1.95 REMARK 500 O HOH A 805 O HOH A 835 1.96 REMARK 500 NH1 ARG A 356 O HOH A 503 1.97 REMARK 500 O HOH A 716 O HOH A 912 1.99 REMARK 500 O HOH A 738 O HOH A 751 2.00 REMARK 500 O HOH A 916 O HOH A 925 2.04 REMARK 500 OE2 GLU A 227 O HOH A 788 2.05 REMARK 500 O HOH A 872 O HOH A 892 2.05 REMARK 500 O HOH A 820 O HOH A 871 2.07 REMARK 500 O HOH A 901 O HOH A 902 2.07 REMARK 500 O HOH A 691 O HOH A 856 2.08 REMARK 500 OD1 ASN A 346 O HOH A 934 2.11 REMARK 500 O HOH A 803 O HOH A 819 2.11 REMARK 500 NE ARG A 356 O HOH A 553 2.13 REMARK 500 O HOH A 734 O HOH A 777 2.14 REMARK 500 OE2 GLU A 313 O HOH A 634 2.15 REMARK 500 O HOH A 796 O HOH A 920 2.15 REMARK 500 O HOH A 596 O HOH A 617 2.15 REMARK 500 O HOH A 741 O HOH A 815 2.15 REMARK 500 O HOH A 617 O HOH A 636 2.15 REMARK 500 NZ LYS A 84 O HOH A 905 2.16 REMARK 500 O HOH A 840 O HOH A 905 2.17 REMARK 500 O HOH A 640 O HOH A 681 2.17 REMARK 500 O HOH A 621 O HOH A 825 2.17 REMARK 500 O ASN A 126 O HOH A 686 2.18 REMARK 500 O HOH A 608 O HOH A 809 2.19 REMARK 500 O HOH A 877 O HOH A 908 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 39 -26.44 -144.19 REMARK 500 ASP A 44 -75.66 -150.80 REMARK 500 ASP A 95 23.88 -149.03 REMARK 500 GLU A 117 56.15 73.82 REMARK 500 ASP A 124 61.25 -105.06 REMARK 500 ARG A 125 12.07 -64.84 REMARK 500 HIS A 207 1.89 -155.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NEQ RELATED DB: PDB DBREF 4NES A 1 366 UNP Q58899 WECB_METJA 1 366 SEQADV 4NES LEU A 367 UNP Q58899 EXPRESSION TAG SEQADV 4NES GLU A 368 UNP Q58899 EXPRESSION TAG SEQADV 4NES HIS A 369 UNP Q58899 EXPRESSION TAG SEQADV 4NES HIS A 370 UNP Q58899 EXPRESSION TAG SEQADV 4NES HIS A 371 UNP Q58899 EXPRESSION TAG SEQADV 4NES HIS A 372 UNP Q58899 EXPRESSION TAG SEQADV 4NES HIS A 373 UNP Q58899 EXPRESSION TAG SEQADV 4NES HIS A 374 UNP Q58899 EXPRESSION TAG SEQRES 1 A 374 MSE LYS LEU SER ILE ILE LEU GLY THR ARG PRO GLU ILE SEQRES 2 A 374 ILE LYS LEU SER PRO ILE ILE ARG ALA LEU GLU LYS THR SEQRES 3 A 374 ASN ILE ASP TRP HIS ILE ILE HIS THR ASN GLN HIS TYR SEQRES 4 A 374 SER GLU ASN MSE ASP LYS ILE PHE PHE GLU GLU LEU ASN SEQRES 5 A 374 LEU PRO ASN PRO LYS TYR ASN LEU ASN ILE GLY SER GLY SEQRES 6 A 374 THR HIS GLY GLU GLN THR GLY LYS MSE LEU ILE GLU ILE SEQRES 7 A 374 GLU LYS VAL LEU LEU LYS GLU LYS PRO ASP VAL VAL VAL SEQRES 8 A 374 VAL GLN GLY ASP THR ASN THR VAL LEU ALA GLY ALA LEU SEQRES 9 A 374 VAL ALA SER LYS LEU LYS ILE ASP VAL ALA HIS VAL GLU SEQRES 10 A 374 ALA GLY LEU ARG SER PHE ASP ARG ASN MSE PRO GLU GLU SEQRES 11 A 374 ILE ASN ARG VAL LEU THR ASP HIS ILE SER SER TYR LEU SEQRES 12 A 374 PHE ALA PRO THR GLU ILE ALA LYS ASN ASN LEU LEU ARG SEQRES 13 A 374 GLU GLY ILE GLU GLU ASN LYS ILE PHE VAL VAL GLY ASN SEQRES 14 A 374 THR ILE VAL ASP ALA THR LEU GLN ASN LEU LYS ILE ALA SEQRES 15 A 374 GLU LYS ASN GLU ASN VAL ARG ALA PHE PHE ASN SER VAL SEQRES 16 A 374 VAL ILE ASP ASP ASP TYR PHE LEU LEU THR LEU HIS ARG SEQRES 17 A 374 ALA GLU ASN VAL ASP ASN LYS GLU ARG LEU LYS ASN ILE SEQRES 18 A 374 VAL GLU GLY ILE PHE GLU ILE ILE GLU ILE TYR ASP LYS SEQRES 19 A 374 ALA ILE ILE PHE SER ILE HIS PRO ARG THR LYS LYS ARG SEQRES 20 A 374 LEU LYS GLU PHE ASN LEU PHE ASP LYS LEU LYS SER ASN SEQRES 21 A 374 LYS LYS ILE LYS ILE ILE GLU PRO VAL GLY TYR LEU GLU SEQRES 22 A 374 PHE LEU MSE LEU GLU LYS ASN ALA GLU LEU ILE LEU THR SEQRES 23 A 374 ASP SER GLY GLY VAL GLN GLU GLU ALA CYS ILE LEU LYS SEQRES 24 A 374 VAL PRO CYS ILE THR LEU ARG ASP ASN THR GLU ARG PRO SEQRES 25 A 374 GLU THR VAL GLU VAL GLY ALA ASN ILE LEU VAL GLY ASP SEQRES 26 A 374 ASN LYS GLU LYS LEU ILE LYS ALA VAL GLU ILE MSE LEU SEQRES 27 A 374 ASN LYS LYS ARG ASN TRP LYS ASN PRO PHE GLY ASN GLY SEQRES 28 A 374 LYS SER GLY GLU ARG ILE VAL ARG ILE LEU THR TYR GLY SEQRES 29 A 374 LYS TYR LEU GLU HIS HIS HIS HIS HIS HIS MODRES 4NES MSE A 1 MET SELENOMETHIONINE MODRES 4NES MSE A 43 MET SELENOMETHIONINE MODRES 4NES MSE A 74 MET SELENOMETHIONINE MODRES 4NES MSE A 127 MET SELENOMETHIONINE MODRES 4NES MSE A 276 MET SELENOMETHIONINE MODRES 4NES MSE A 337 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 43 8 HET MSE A 74 8 HET MSE A 127 8 HET MSE A 276 8 HET MSE A 337 8 HET UD1 A 400 39 HET UDP A 401 25 HETNAM MSE SELENOMETHIONINE HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 UD1 C17 H27 N3 O17 P2 FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 HOH *447(H2 O) HELIX 1 1 THR A 9 GLU A 24 1 16 HELIX 2 2 SER A 40 MSE A 43 5 4 HELIX 3 3 ASP A 44 LEU A 51 1 8 HELIX 4 4 THR A 66 LYS A 86 1 21 HELIX 5 5 THR A 96 LEU A 109 1 14 HELIX 6 6 MSE A 127 ILE A 139 1 13 HELIX 7 7 THR A 147 GLU A 157 1 11 HELIX 8 8 GLU A 160 ASN A 162 5 3 HELIX 9 9 ASN A 169 LYS A 184 1 16 HELIX 10 10 ASN A 185 VAL A 196 1 12 HELIX 11 11 ARG A 208 ASP A 213 1 6 HELIX 12 12 ASN A 214 ASP A 233 1 20 HELIX 13 13 HIS A 241 PHE A 251 1 11 HELIX 14 14 LEU A 253 ASN A 260 1 8 HELIX 15 15 GLY A 270 ALA A 281 1 12 HELIX 16 16 SER A 288 LYS A 299 1 12 HELIX 17 17 PRO A 312 VAL A 317 1 6 HELIX 18 18 ASN A 326 ASN A 339 1 14 HELIX 19 19 LYS A 352 GLY A 364 1 13 SHEET 1 A 7 TYR A 58 ASN A 59 0 SHEET 2 A 7 TRP A 30 HIS A 34 1 N HIS A 34 O TYR A 58 SHEET 3 A 7 LEU A 3 LEU A 7 1 N ILE A 5 O ILE A 33 SHEET 4 A 7 VAL A 89 GLN A 93 1 O VAL A 91 N SER A 4 SHEET 5 A 7 ASP A 112 VAL A 116 1 O ALA A 114 N VAL A 90 SHEET 6 A 7 TYR A 142 ALA A 145 1 O TYR A 142 N HIS A 115 SHEET 7 A 7 ILE A 164 VAL A 166 1 O PHE A 165 N LEU A 143 SHEET 1 B 6 ILE A 263 ILE A 266 0 SHEET 2 B 6 ALA A 235 SER A 239 1 N ILE A 236 O LYS A 264 SHEET 3 B 6 TYR A 201 THR A 205 1 N LEU A 204 O ILE A 237 SHEET 4 B 6 LEU A 283 THR A 286 1 O LEU A 285 N LEU A 203 SHEET 5 B 6 CYS A 302 THR A 304 1 O ILE A 303 N ILE A 284 SHEET 6 B 6 ASN A 320 LEU A 322 1 O ILE A 321 N THR A 304 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ASN A 42 N MSE A 43 1555 1555 1.34 LINK C MSE A 43 N ASP A 44 1555 1555 1.33 LINK C LYS A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N LEU A 75 1555 1555 1.33 LINK C ASN A 126 N MSE A 127 1555 1555 1.35 LINK C MSE A 127 N PRO A 128 1555 1555 1.36 LINK C LEU A 275 N MSE A 276 1555 1555 1.33 LINK C MSE A 276 N LEU A 277 1555 1555 1.33 LINK C ILE A 336 N MSE A 337 1555 1555 1.33 LINK C MSE A 337 N LEU A 338 1555 1555 1.33 SITE 1 AC1 26 PRO A 11 GLN A 37 HIS A 38 TYR A 39 SITE 2 AC1 26 SER A 40 SER A 64 HIS A 67 THR A 96 SITE 3 AC1 26 ASN A 97 GLU A 129 HIS A 207 ARG A 208 SITE 4 AC1 26 HIS A 241 PRO A 242 ARG A 243 LYS A 246 SITE 5 AC1 26 UDP A 401 HOH A 524 HOH A 534 HOH A 541 SITE 6 AC1 26 HOH A 574 HOH A 595 HOH A 623 HOH A 625 SITE 7 AC1 26 HOH A 644 HOH A 668 SITE 1 AC2 21 ARG A 10 PRO A 11 ILE A 14 PHE A 47 SITE 2 AC2 21 HIS A 207 ARG A 208 SER A 239 PRO A 268 SITE 3 AC2 21 VAL A 269 TYR A 271 PHE A 274 SER A 288 SITE 4 AC2 21 GLY A 289 GLY A 290 GLU A 294 UD1 A 400 SITE 5 AC2 21 HOH A 519 HOH A 522 HOH A 535 HOH A 595 SITE 6 AC2 21 HOH A 734 CRYST1 130.869 52.743 59.428 90.00 94.62 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007641 0.000000 0.000617 0.00000 SCALE2 0.000000 0.018960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016882 0.00000 HETATM 1 N MSE A 1 48.304 26.133 8.565 1.00 27.75 N ANISOU 1 N MSE A 1 3313 4129 3099 79 23 -252 N HETATM 2 CA MSE A 1 48.089 24.811 7.990 1.00 24.32 C ANISOU 2 CA MSE A 1 2880 3713 2645 72 14 -318 C HETATM 3 C MSE A 1 47.453 23.864 8.975 1.00 18.26 C ANISOU 3 C MSE A 1 2120 2895 1923 51 -3 -354 C HETATM 4 O MSE A 1 46.521 23.126 8.655 1.00 20.73 O ANISOU 4 O MSE A 1 2428 3222 2226 40 -22 -393 O HETATM 5 CB MSE A 1 49.424 24.212 7.580 1.00 24.22 C ANISOU 5 CB MSE A 1 2872 3698 2631 80 38 -344 C HETATM 6 CG MSE A 1 49.991 24.867 6.375 1.00 22.94 C ANISOU 6 CG MSE A 1 2703 3588 2426 99 54 -316 C HETATM 7 SE MSE A 1 48.914 24.431 4.828 1.00 40.55 SE ANISOU 7 SE MSE A 1 4923 5878 4606 97 31 -339 SE HETATM 8 CE MSE A 1 50.056 22.984 4.312 1.00 13.30 C ANISOU 8 CE MSE A 1 1480 2407 1167 95 48 -402 C