HEADER OXIDOREDUCTASE 31-OCT-13 4NFH TITLE V207A HORSE LIVER ALCOHOL DEHYDROGENASE E COMPLEXED WITH NAD AND 2,3, TITLE 2 4,5,6-PENTAFLUOROBENZYL ALCOHOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE E CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: DOMESTIC HORSE,EQUINE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 STRAIN: DOMESTIC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBBP/ADHE KEYWDS ROSSMANN FOLD, DEHYROGENASE, NAD, LIVER, CYTOSOL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.V.PLAPP REVDAT 4 20-SEP-23 4NFH 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4NFH 1 REMARK REVDAT 2 26-FEB-14 4NFH 1 JRNL REVDAT 1 13-NOV-13 4NFH 0 JRNL AUTH A.YAHASHIRI,J.K.RUBACH,B.V.PLAPP JRNL TITL EFFECTS OF CAVITIES AT THE NICOTINAMIDE BINDING SITE OF JRNL TITL 2 LIVER ALCOHOL DEHYDROGENASE ON STRUCTURE, DYNAMICS AND JRNL TITL 3 CATALYSIS. JRNL REF BIOCHEMISTRY V. 53 881 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24437493 JRNL DOI 10.1021/BI401583F REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 216747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1066 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11932 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5566 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 150 REMARK 3 SOLVENT ATOMS : 994 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : -0.49000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.15000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.035 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.428 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.980 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6034 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5951 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8196 ; 1.892 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13853 ; 0.911 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 764 ; 6.244 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;38.114 ;24.762 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1103 ;11.387 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.701 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 971 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6534 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1188 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3024 ; 1.443 ; 1.322 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3023 ; 1.443 ; 1.322 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3783 ; 1.653 ; 1.994 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3784 ; 1.653 ; 1.994 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3010 ; 2.764 ; 1.648 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3011 ; 2.764 ; 1.649 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4406 ; 3.088 ; 2.348 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7809 ; 5.096 ;13.715 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7084 ; 3.814 ;12.034 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11985 ; 3.921 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 228 ;41.554 ;10.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 12662 ;10.420 ;10.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.827 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK SI(111) SAGITALLY REMARK 200 FOCUSSED REMARK 200 OPTICS : ROSENBAUM VERTICAL FOCUSSING REMARK 200 MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 217807 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 3.770 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.46 REMARK 200 R MERGE FOR SHELL (I) : 0.36300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: ISOMORPHOUS REMARK 200 STARTING MODEL: PDB ENTRY 4DWV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM AMMONIUM N-[TRIS(HYDROXYMETHYL) REMARK 280 METHYL]-2-AMINOETHANE SULFONATE, PH 6.7 (AT 25 C), 0.25 MM EDTA, REMARK 280 10 MG/ML PROTEIN, 1 MM NAD+, 10 MM 2,3,4,5,6-PENTAFLUOROBENZYL REMARK 280 ALCOHOL, 12 TO 25 % 2-METHYL-2,4-PENTANEDIOL, MICRODIALYSIS, REMARK 280 TEMPERATURE 278K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 164 CA SER A 164 CB 0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 369 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP B 161 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 67 -4.15 -144.33 REMARK 500 THR A 143 -53.50 -120.14 REMARK 500 CYS A 174 -78.37 -156.73 REMARK 500 ILE A 269 -62.16 -125.96 REMARK 500 ILE A 368 -88.48 -100.10 REMARK 500 HIS B 67 -7.63 -143.00 REMARK 500 THR B 143 -58.18 -121.62 REMARK 500 SER B 144 70.21 48.04 REMARK 500 CYS B 174 -78.17 -153.34 REMARK 500 ILE B 269 -60.94 -127.87 REMARK 500 ILE B 368 -88.56 -98.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 HIS A 67 NE2 107.3 REMARK 620 3 CYS A 174 SG 123.0 111.6 REMARK 620 4 PFB A 378 O1 104.9 102.1 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 100 SG 108.9 REMARK 620 3 CYS A 103 SG 115.4 105.3 REMARK 620 4 CYS A 111 SG 103.8 120.2 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 HIS B 67 NE2 108.1 REMARK 620 3 CYS B 174 SG 123.7 110.9 REMARK 620 4 PFB B 378 O1 103.3 102.5 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 100 SG 108.9 REMARK 620 3 CYS B 103 SG 116.0 105.8 REMARK 620 4 CYS B 111 SG 103.2 120.0 103.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAJ A 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PFB A 378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAJ B 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PFB B 378 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 379 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DWV RELATED DB: PDB REMARK 900 WILD-TYPE HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED WITH NAD AND REMARK 900 2,3,4,5,6-PENTAFLUOROBENZYL ALCOHOL REMARK 900 RELATED ID: 4NG5 RELATED DB: PDB REMARK 900 V203A HORSE LIVER ALCOHOL DEHYDROGENASE E COMPLEXED WITH NAD+ AND 2, REMARK 900 3,4,5,6-PENTAFLUOROBENZYL ALCOHOL REMARK 900 RELATED ID: 3OQ6 RELATED DB: PDB REMARK 900 A317C HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED WITH NAD AND 2,3, REMARK 900 4,5,6-PENTAFLUOROBENZYL ALCOHOL DBREF 4NFH A 1 374 UNP P00327 ADH1E_HORSE 2 375 DBREF 4NFH B 1 374 UNP P00327 ADH1E_HORSE 2 375 SEQADV 4NFH ALA A 207 UNP P00327 VAL 208 ENGINEERED MUTATION SEQADV 4NFH ALA B 207 UNP P00327 VAL 208 ENGINEERED MUTATION SEQRES 1 A 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 A 374 LEU TRP GLU GLU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 A 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 A 374 MET VAL ALA THR GLY ILE CYS ARG SER ASP ASP HIS VAL SEQRES 5 A 374 VAL SER GLY THR LEU VAL THR PRO LEU PRO VAL ILE ALA SEQRES 6 A 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER ILE GLY GLU SEQRES 7 A 374 GLY VAL THR THR VAL ARG PRO GLY ASP LYS VAL ILE PRO SEQRES 8 A 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG VAL CYS LYS SEQRES 9 A 374 HIS PRO GLU GLY ASN PHE CYS LEU LYS ASN ASP LEU SER SEQRES 10 A 374 MET PRO ARG GLY THR MET GLN ASP GLY THR SER ARG PHE SEQRES 11 A 374 THR CYS ARG GLY LYS PRO ILE HIS HIS PHE LEU GLY THR SEQRES 12 A 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ILE SER SEQRES 13 A 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 A 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 A 374 ALA VAL LYS VAL ALA LYS VAL THR GLN GLY SER THR CYS SEQRES 16 A 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER ALA ILE SEQRES 17 A 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE GLY SEQRES 18 A 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 A 374 VAL GLY ALA THR GLU CYS VAL ASN PRO GLN ASP TYR LYS SEQRES 20 A 374 LYS PRO ILE GLN GLU VAL LEU THR GLU MET SER ASN GLY SEQRES 21 A 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 A 374 THR MET VAL THR ALA LEU SER CYS CYS GLN GLU ALA TYR SEQRES 23 A 374 GLY VAL SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 A 374 ASN LEU SER MET ASN PRO MET LEU LEU LEU SER GLY ARG SEQRES 25 A 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 A 374 ASP SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 A 374 LYS PHE ALA LEU ASP PRO LEU ILE THR HIS VAL LEU PRO SEQRES 28 A 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 A 374 GLY GLU SER ILE ARG THR ILE LEU THR PHE SEQRES 1 B 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 B 374 LEU TRP GLU GLU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 B 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 B 374 MET VAL ALA THR GLY ILE CYS ARG SER ASP ASP HIS VAL SEQRES 5 B 374 VAL SER GLY THR LEU VAL THR PRO LEU PRO VAL ILE ALA SEQRES 6 B 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER ILE GLY GLU SEQRES 7 B 374 GLY VAL THR THR VAL ARG PRO GLY ASP LYS VAL ILE PRO SEQRES 8 B 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG VAL CYS LYS SEQRES 9 B 374 HIS PRO GLU GLY ASN PHE CYS LEU LYS ASN ASP LEU SER SEQRES 10 B 374 MET PRO ARG GLY THR MET GLN ASP GLY THR SER ARG PHE SEQRES 11 B 374 THR CYS ARG GLY LYS PRO ILE HIS HIS PHE LEU GLY THR SEQRES 12 B 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ILE SER SEQRES 13 B 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 B 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 B 374 ALA VAL LYS VAL ALA LYS VAL THR GLN GLY SER THR CYS SEQRES 16 B 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER ALA ILE SEQRES 17 B 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE GLY SEQRES 18 B 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 B 374 VAL GLY ALA THR GLU CYS VAL ASN PRO GLN ASP TYR LYS SEQRES 20 B 374 LYS PRO ILE GLN GLU VAL LEU THR GLU MET SER ASN GLY SEQRES 21 B 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 B 374 THR MET VAL THR ALA LEU SER CYS CYS GLN GLU ALA TYR SEQRES 23 B 374 GLY VAL SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 B 374 ASN LEU SER MET ASN PRO MET LEU LEU LEU SER GLY ARG SEQRES 25 B 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 B 374 ASP SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 B 374 LYS PHE ALA LEU ASP PRO LEU ILE THR HIS VAL LEU PRO SEQRES 28 B 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 B 374 GLY GLU SER ILE ARG THR ILE LEU THR PHE HET ZN A 375 1 HET ZN A 376 1 HET NAJ A 377 44 HET PFB A 378 13 HET MRD A 379 8 HET MRD A 380 8 HET MRD A 381 8 HET ZN B 375 1 HET ZN B 376 1 HET NAJ B 377 44 HET PFB B 378 13 HET MRD B 379 8 HETNAM ZN ZINC ION HETNAM NAJ NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) HETNAM PFB 2,3,4,5,6-PENTAFLUOROBENZYL ALCOHOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 NAJ 2(C21 H27 N7 O14 P2) FORMUL 6 PFB 2(C7 H3 F5 O) FORMUL 7 MRD 4(C6 H14 O2) FORMUL 15 HOH *994(H2 O) HELIX 1 1 CYS A 46 SER A 54 1 9 HELIX 2 2 CYS A 100 HIS A 105 1 6 HELIX 3 3 PRO A 165 CYS A 170 1 6 HELIX 4 4 LEU A 171 GLY A 173 5 3 HELIX 5 5 CYS A 174 LYS A 185 1 12 HELIX 6 6 GLY A 201 ALA A 214 1 14 HELIX 7 7 ASN A 225 ASP A 227 5 3 HELIX 8 8 LYS A 228 VAL A 235 1 8 HELIX 9 9 ASN A 242 TYR A 246 5 5 HELIX 10 10 PRO A 249 SER A 258 1 10 HELIX 11 11 ARG A 271 CYS A 282 1 12 HELIX 12 12 PRO A 305 SER A 310 1 6 HELIX 13 13 ILE A 318 PHE A 322 5 5 HELIX 14 14 LYS A 323 ALA A 337 1 15 HELIX 15 15 LEU A 342 PRO A 344 5 3 HELIX 16 16 LYS A 354 SER A 364 1 11 HELIX 17 17 CYS B 46 GLY B 55 1 10 HELIX 18 18 CYS B 100 HIS B 105 1 6 HELIX 19 19 PRO B 165 CYS B 170 1 6 HELIX 20 20 LEU B 171 GLY B 173 5 3 HELIX 21 21 CYS B 174 LYS B 185 1 12 HELIX 22 22 GLY B 201 ALA B 214 1 14 HELIX 23 23 ASN B 225 ASP B 227 5 3 HELIX 24 24 LYS B 228 GLY B 236 1 9 HELIX 25 25 ASN B 242 TYR B 246 5 5 HELIX 26 26 PRO B 249 SER B 258 1 10 HELIX 27 27 ARG B 271 CYS B 281 1 11 HELIX 28 28 PRO B 305 SER B 310 1 6 HELIX 29 29 ILE B 318 PHE B 322 5 5 HELIX 30 30 LYS B 323 ALA B 337 1 15 HELIX 31 31 LEU B 342 PRO B 344 5 3 HELIX 32 32 LYS B 354 SER B 364 1 11 SHEET 1 A 4 ILE A 7 VAL A 13 0 SHEET 2 A 4 SER A 22 VAL A 28 -1 O VAL A 28 N ILE A 7 SHEET 3 A 4 PHE A 130 CYS A 132 -1 O THR A 131 N GLU A 27 SHEET 4 A 4 LYS A 135 ILE A 137 -1 O LYS A 135 N CYS A 132 SHEET 1 B 5 TYR A 149 ASP A 153 0 SHEET 2 B 5 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 B 5 ALA A 69 ILE A 76 -1 O ILE A 72 N LYS A 39 SHEET 4 B 5 LYS A 88 PRO A 91 -1 O VAL A 89 N GLY A 71 SHEET 5 B 5 VAL A 157 LYS A 159 -1 O ALA A 158 N ILE A 90 SHEET 1 C 4 TYR A 149 ASP A 153 0 SHEET 2 C 4 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 C 4 ARG A 369 THR A 373 -1 O LEU A 372 N THR A 43 SHEET 4 C 4 ILE A 346 PRO A 351 1 N LEU A 350 O ILE A 371 SHEET 1 D12 GLU A 239 VAL A 241 0 SHEET 2 D12 ARG A 218 VAL A 222 1 N GLY A 221 O VAL A 241 SHEET 3 D12 THR A 194 PHE A 198 1 N CYS A 195 O ILE A 220 SHEET 4 D12 PHE A 264 GLU A 267 1 O PHE A 266 N PHE A 198 SHEET 5 D12 VAL A 288 ILE A 291 1 O VAL A 290 N SER A 265 SHEET 6 D12 THR A 313 GLY A 316 1 O LYS A 315 N ILE A 291 SHEET 7 D12 THR B 313 GLY B 316 -1 O TRP B 314 N TRP A 314 SHEET 8 D12 VAL B 288 ILE B 291 1 N ILE B 291 O LYS B 315 SHEET 9 D12 PHE B 264 GLU B 267 1 N SER B 265 O VAL B 290 SHEET 10 D12 THR B 194 PHE B 198 1 N PHE B 198 O PHE B 266 SHEET 11 D12 ARG B 218 VAL B 222 1 O ILE B 220 N CYS B 195 SHEET 12 D12 GLU B 239 VAL B 241 1 O VAL B 241 N GLY B 221 SHEET 1 E 2 LEU A 301 MET A 303 0 SHEET 2 E 2 LEU B 301 MET B 303 -1 O LEU B 301 N MET A 303 SHEET 1 F 4 ILE B 7 VAL B 13 0 SHEET 2 F 4 SER B 22 VAL B 28 -1 O SER B 22 N VAL B 13 SHEET 3 F 4 PHE B 130 CYS B 132 -1 O THR B 131 N GLU B 27 SHEET 4 F 4 LYS B 135 ILE B 137 -1 O LYS B 135 N CYS B 132 SHEET 1 G 5 TYR B 149 ASP B 153 0 SHEET 2 G 5 GLU B 35 GLY B 44 -1 N ILE B 38 O THR B 150 SHEET 3 G 5 ALA B 69 ILE B 76 -1 O ILE B 72 N LYS B 39 SHEET 4 G 5 LYS B 88 PRO B 91 -1 O VAL B 89 N GLY B 71 SHEET 5 G 5 VAL B 157 LYS B 159 -1 O ALA B 158 N ILE B 90 SHEET 1 H 4 TYR B 149 ASP B 153 0 SHEET 2 H 4 GLU B 35 GLY B 44 -1 N ILE B 38 O THR B 150 SHEET 3 H 4 ARG B 369 THR B 373 -1 O LEU B 372 N THR B 43 SHEET 4 H 4 ILE B 346 PRO B 351 1 N LEU B 350 O ILE B 371 LINK SG ACYS A 46 ZN ZN A 375 1555 1555 2.33 LINK NE2 HIS A 67 ZN ZN A 375 1555 1555 2.04 LINK SG CYS A 97 ZN ZN A 376 1555 1555 2.33 LINK SG CYS A 100 ZN ZN A 376 1555 1555 2.33 LINK SG CYS A 103 ZN ZN A 376 1555 1555 2.35 LINK SG CYS A 111 ZN ZN A 376 1555 1555 2.32 LINK SG CYS A 174 ZN ZN A 375 1555 1555 2.31 LINK ZN ZN A 375 O1 PFB A 378 1555 1555 1.90 LINK SG CYS B 46 ZN ZN B 375 1555 1555 2.32 LINK NE2 HIS B 67 ZN ZN B 375 1555 1555 2.06 LINK SG CYS B 97 ZN ZN B 376 1555 1555 2.34 LINK SG CYS B 100 ZN ZN B 376 1555 1555 2.33 LINK SG CYS B 103 ZN ZN B 376 1555 1555 2.37 LINK SG CYS B 111 ZN ZN B 376 1555 1555 2.33 LINK SG CYS B 174 ZN ZN B 375 1555 1555 2.28 LINK ZN ZN B 375 O1 PFB B 378 1555 1555 1.96 CISPEP 1 LEU A 61 PRO A 62 0 -6.00 CISPEP 2 LEU B 61 PRO B 62 0 -3.14 SITE 1 AC1 5 CYS A 46 HIS A 67 CYS A 174 NAJ A 377 SITE 2 AC1 5 PFB A 378 SITE 1 AC2 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC3 32 ARG A 47 SER A 48 HIS A 51 CYS A 174 SITE 2 AC3 32 THR A 178 GLY A 199 GLY A 201 GLY A 202 SITE 3 AC3 32 VAL A 203 ASP A 223 ILE A 224 LYS A 228 SITE 4 AC3 32 VAL A 268 ILE A 269 ARG A 271 VAL A 292 SITE 5 AC3 32 GLY A 293 VAL A 294 ALA A 317 ILE A 318 SITE 6 AC3 32 PHE A 319 ARG A 369 ZN A 375 PFB A 378 SITE 7 AC3 32 HOH A 406 HOH A 430 HOH A 439 HOH A 588 SITE 8 AC3 32 HOH A 647 HOH A 664 HOH A 686 HOH A 711 SITE 1 AC4 14 CYS A 46 SER A 48 LEU A 57 HIS A 67 SITE 2 AC4 14 PHE A 93 LEU A 116 PHE A 140 LEU A 141 SITE 3 AC4 14 CYS A 174 VAL A 294 ILE A 318 ZN A 375 SITE 4 AC4 14 NAJ A 377 LEU B 309 SITE 1 AC5 4 LYS A 338 LYS A 339 PHE A 340 HOH A1019 SITE 1 AC6 7 ARG A 218 THR A 238 GLU A 239 HOH A 998 SITE 2 AC6 7 THR B 238 GLU B 239 HOH B 930 SITE 1 AC7 5 LYS A 168 ASP A 343 ILE A 346 THR A 347 SITE 2 AC7 5 HOH A 852 SITE 1 AC8 5 CYS B 46 HIS B 67 CYS B 174 NAJ B 377 SITE 2 AC8 5 PFB B 378 SITE 1 AC9 4 CYS B 97 CYS B 100 CYS B 103 CYS B 111 SITE 1 BC1 34 ARG B 47 SER B 48 HIS B 51 CYS B 174 SITE 2 BC1 34 THR B 178 GLY B 199 GLY B 201 GLY B 202 SITE 3 BC1 34 VAL B 203 ASP B 223 ILE B 224 LYS B 228 SITE 4 BC1 34 VAL B 268 ILE B 269 ARG B 271 VAL B 292 SITE 5 BC1 34 GLY B 293 VAL B 294 ALA B 317 ILE B 318 SITE 6 BC1 34 PHE B 319 LEU B 362 ARG B 369 ZN B 375 SITE 7 BC1 34 PFB B 378 HOH B 403 HOH B 443 HOH B 449 SITE 8 BC1 34 HOH B 514 HOH B 574 HOH B 649 HOH B 664 SITE 9 BC1 34 HOH B 689 HOH B 907 SITE 1 BC2 14 LEU A 309 CYS B 46 SER B 48 LEU B 57 SITE 2 BC2 14 HIS B 67 PHE B 93 LEU B 116 PHE B 140 SITE 3 BC2 14 LEU B 141 CYS B 174 VAL B 294 ILE B 318 SITE 4 BC2 14 ZN B 375 NAJ B 377 SITE 1 BC3 2 LYS B 338 LYS B 339 CRYST1 44.490 51.230 92.320 91.96 103.00 110.28 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022477 0.008306 0.006256 0.00000 SCALE2 0.000000 0.020810 0.002573 0.00000 SCALE3 0.000000 0.000000 0.011201 0.00000