data_4NFQ # _entry.id 4NFQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NFQ pdb_00004nfq 10.2210/pdb4nfq/pdb NDB NA2785 ? ? RCSB RCSB083145 ? ? WWPDB D_1000083145 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-02 2 'Structure model' 1 1 2014-09-03 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_dist_value' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 6 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 3 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 18 3 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 19 3 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 20 3 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 21 3 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 22 3 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 23 3 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 24 3 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NFQ _pdbx_database_status.recvd_initial_deposition_date 2013-10-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NFO . unspecified PDB 4NFP . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Beal, P.A.' 1 'Fisher, A.J.' 2 'Phelps, K.J.' 3 'Ibarra-Soza, J.M.' 4 'Zheng, Y.' 5 # _citation.id primary _citation.title 'Click Modification of RNA at Adenosine: Structure and Reactivity of 7-Ethynyl- and 7-Triazolyl-8-aza-7-deazaadenosine in RNA.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 9 _citation.page_first 1780 _citation.page_last 1787 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24896732 _citation.pdbx_database_id_DOI 10.1021/cb500270x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Phelps, K.J.' 1 ? primary 'Ibarra-Soza, J.M.' 2 ? primary 'Tran, K.' 3 ? primary 'Fisher, A.J.' 4 ? primary 'Beal, P.A.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'GCAG(7AT)CUUAAGUCUGC' 5165.129 3 ? ? ? ? 2 water nat water 18.015 78 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GCAG(7AT)CUUAAGUCUGC' _entity_poly.pdbx_seq_one_letter_code_can GCAGACUUAAGUCUGC _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 A n 1 4 G n 1 5 7AT n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 U n 1 15 G n 1 16 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 7AT 'RNA linking' n '1-(5-O-phosphono-beta-D-ribofuranosyl)-3-(1H-1,2,3-triazol-5-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine' 7-triazolyl-8-aza-7-deazaadenosine 'C12 H15 N8 O7 P' 414.271 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 7AT 5 5 5 7AT 7AT A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 A 3 3 3 A A B . n B 1 4 G 4 4 4 G G B . n B 1 5 7AT 5 5 5 7AT 7AT B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 U 14 14 14 U U B . n B 1 15 G 15 15 15 G G B . n B 1 16 C 16 16 16 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 C 2 2 2 C C C . n C 1 3 A 3 3 3 A A C . n C 1 4 G 4 4 4 G G C . n C 1 5 7AT 5 5 5 7AT 7AT C . n C 1 6 C 6 6 6 C C C . n C 1 7 U 7 7 7 U U C . n C 1 8 U 8 8 8 U U C . n C 1 9 A 9 9 9 A A C . n C 1 10 A 10 10 10 A A C . n C 1 11 G 11 11 11 G G C . n C 1 12 U 12 12 12 U U C . n C 1 13 C 13 13 13 C C C . n C 1 14 U 14 14 14 U U C . n C 1 15 G 15 15 15 G G C . n C 1 16 C 16 16 16 C C C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 101 3 HOH HOH A . D 2 HOH 2 102 6 HOH HOH A . D 2 HOH 3 103 18 HOH HOH A . D 2 HOH 4 104 22 HOH HOH A . D 2 HOH 5 105 25 HOH HOH A . D 2 HOH 6 106 26 HOH HOH A . D 2 HOH 7 107 29 HOH HOH A . D 2 HOH 8 108 32 HOH HOH A . D 2 HOH 9 109 34 HOH HOH A . D 2 HOH 10 110 40 HOH HOH A . D 2 HOH 11 111 42 HOH HOH A . D 2 HOH 12 112 61 HOH HOH A . D 2 HOH 13 113 74 HOH HOH A . D 2 HOH 14 114 75 HOH HOH A . D 2 HOH 15 115 81 HOH HOH A . D 2 HOH 16 116 90 HOH HOH A . D 2 HOH 17 117 97 HOH HOH A . D 2 HOH 18 118 100 HOH HOH A . D 2 HOH 19 119 101 HOH HOH A . D 2 HOH 20 120 102 HOH HOH A . D 2 HOH 21 121 103 HOH HOH A . D 2 HOH 22 122 107 HOH HOH A . D 2 HOH 23 123 110 HOH HOH A . D 2 HOH 24 124 114 HOH HOH A . D 2 HOH 25 125 115 HOH HOH A . E 2 HOH 1 101 1 HOH HOH B . E 2 HOH 2 102 4 HOH HOH B . E 2 HOH 3 103 10 HOH HOH B . E 2 HOH 4 104 11 HOH HOH B . E 2 HOH 5 105 12 HOH HOH B . E 2 HOH 6 106 14 HOH HOH B . E 2 HOH 7 107 15 HOH HOH B . E 2 HOH 8 108 16 HOH HOH B . E 2 HOH 9 109 21 HOH HOH B . E 2 HOH 10 110 27 HOH HOH B . E 2 HOH 11 111 28 HOH HOH B . E 2 HOH 12 112 36 HOH HOH B . E 2 HOH 13 113 37 HOH HOH B . E 2 HOH 14 114 38 HOH HOH B . E 2 HOH 15 115 45 HOH HOH B . E 2 HOH 16 116 48 HOH HOH B . E 2 HOH 17 117 49 HOH HOH B . E 2 HOH 18 118 51 HOH HOH B . E 2 HOH 19 119 52 HOH HOH B . E 2 HOH 20 120 62 HOH HOH B . E 2 HOH 21 121 85 HOH HOH B . E 2 HOH 22 122 88 HOH HOH B . E 2 HOH 23 123 92 HOH HOH B . E 2 HOH 24 124 93 HOH HOH B . E 2 HOH 25 125 94 HOH HOH B . E 2 HOH 26 126 99 HOH HOH B . E 2 HOH 27 127 104 HOH HOH B . E 2 HOH 28 128 108 HOH HOH B . F 2 HOH 1 101 66 HOH HOH C . F 2 HOH 2 102 5 HOH HOH C . F 2 HOH 3 103 7 HOH HOH C . F 2 HOH 4 104 8 HOH HOH C . F 2 HOH 5 105 9 HOH HOH C . F 2 HOH 6 106 13 HOH HOH C . F 2 HOH 7 107 17 HOH HOH C . F 2 HOH 8 108 20 HOH HOH C . F 2 HOH 9 109 23 HOH HOH C . F 2 HOH 10 110 24 HOH HOH C . F 2 HOH 11 111 30 HOH HOH C . F 2 HOH 12 112 31 HOH HOH C . F 2 HOH 13 113 33 HOH HOH C . F 2 HOH 14 114 43 HOH HOH C . F 2 HOH 15 115 47 HOH HOH C . F 2 HOH 16 116 56 HOH HOH C . F 2 HOH 17 117 63 HOH HOH C . F 2 HOH 18 118 67 HOH HOH C . F 2 HOH 19 119 71 HOH HOH C . F 2 HOH 20 120 72 HOH HOH C . F 2 HOH 21 121 73 HOH HOH C . F 2 HOH 22 122 79 HOH HOH C . F 2 HOH 23 123 84 HOH HOH C . F 2 HOH 24 124 112 HOH HOH C . F 2 HOH 25 125 113 HOH HOH C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0029 ? 3 # _cell.entry_id 4NFQ _cell.length_a 77.360 _cell.length_b 44.380 _cell.length_c 48.830 _cell.angle_alpha 90.00 _cell.angle_beta 121.97 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NFQ _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4NFQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details ;10% MPD(v/v) (Drop), 20% MPD(v/v) (reservoir), 40mM Na-cacodylate trihydrate (pH 7), 12mM spermine tetrahydrochloride, 80mM KCl, 10mM MgCl2 hexahydrate , VAPOR DIFFUSION, SITTING DROP, temperature 294.15K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.details ? _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2013-04-29 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ;Si(111) Side scattering I-beam bent single crystal; asymmetric cut 4.9650 deg ; _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.127 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.127 # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 1.70 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 16.42 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs 0.025 _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4NFQ _reflns.B_iso_Wilson_estimate ? _reflns.percent_possible_obs 93.7 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F 0. _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all 15661 _reflns.d_resolution_low 36.79 _reflns.pdbx_redundancy 1.88 _reflns.number_obs 14671 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.74 _reflns_shell.percent_possible_all 88.6 _reflns_shell.Rmerge_I_obs 0.314 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.27 _reflns_shell.pdbx_redundancy 1.69 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1133 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_percent_reflns_R_free 5.0 _refine.overall_SU_B 8.393 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4NFQ _refine.aniso_B[2][3] 0.00 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML 0.120 _refine.aniso_B[1][3] -1.73 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.aniso_B[3][3] -2.57 _refine.solvent_model_param_ksol ? _refine.ls_number_restraints ? _refine.aniso_B[1][1] 2.60 _refine.pdbx_overall_ESU_R 0.134 _refine.ls_R_factor_obs 0.22383 _refine.occupancy_min ? _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.occupancy_max ? _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.ls_number_reflns_R_free 740 _refine.correlation_coeff_Fo_to_Fc_free 0.975 _refine.pdbx_ls_sigma_F 0. _refine.ls_percent_reflns_obs 94.08 _refine.ls_R_factor_R_work 0.22270 _refine.overall_SU_R_free ? _refine.ls_d_res_high 1.70 _refine.pdbx_overall_ESU_R_Free 0.121 _refine.B_iso_min ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.B_iso_mean 38.673 _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all 0.22383 _refine.aniso_B[2][2] 3.04 _refine.B_iso_max ? _refine.pdbx_ls_sigma_I ? _refine.ls_d_res_low 36.79 _refine.pdbx_overall_phase_error ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.aniso_B[1][2] 0.00 _refine.ls_R_factor_R_free 0.24351 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 13931 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_number_reflns_all 14671 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4NFQ _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.121 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1026 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 1104 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 36.79 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.012 0.012 ? 1146 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.009 0.020 ? 474 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.503 1.408 ? 1779 ? 'X-RAY DIFFRACTION' r_angle_other_deg 3.420 3.000 ? 1149 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.114 0.200 ? 192 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.017 0.020 ? 573 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.004 0.020 ? 249 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id 1 A 939 0.01 0.05 'interatomic distance' 1 ? ? ? ? ? ? 1 'X-RAY DIFFRACTION' 2 B 939 0.01 0.05 'interatomic distance' 1 ? ? ? ? ? ? 2 'X-RAY DIFFRACTION' 1 A 939 0.01 0.05 'interatomic distance' 2 ? ? ? ? ? ? 3 'X-RAY DIFFRACTION' 2 C 939 0.01 0.05 'interatomic distance' 2 ? ? ? ? ? ? 4 'X-RAY DIFFRACTION' 1 B 938 0.01 0.05 'interatomic distance' 3 ? ? ? ? ? ? 5 'X-RAY DIFFRACTION' 2 C 938 0.01 0.05 'interatomic distance' 3 ? ? ? ? ? ? 6 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_R_work 949 _refine_ls_shell.R_factor_R_work 0.374 _refine_ls_shell.percent_reflns_obs 88.83 _refine_ls_shell.R_factor_R_free 0.444 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 949 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 1 A 2 2 C 2 1 B 3 2 C 3 # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 0 A G 1 . A C 16 . A G 1 A C 16 0 ? 1 2 0 B G 1 . B C 16 . B G 1 B C 16 0 ? 2 1 0 A G 1 . A C 16 . A G 1 A C 16 0 ? 2 2 0 C G 1 . C C 16 . C G 1 C C 16 0 ? 3 1 0 B G 1 . B C 16 . B G 1 B C 16 0 ? 3 2 0 C G 1 . C C 16 . C G 1 C C 16 0 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? # _database_PDB_matrix.entry_id 4NFQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4NFQ _struct.title 'Crystal Structure Analysis of the 16mer GCAGNCUUAAGUCUGC containing 7-triazolyl-8-aza-7-deazaadenosine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NFQ _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA 16mer oligo, 7-triazolyl-8-aza-7-deazaadenosine, Position 5, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4NFQ _struct_ref.pdbx_db_accession 4NFQ _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4NFQ A 1 ? 16 ? 4NFQ 1 ? 16 ? 1 16 2 1 4NFQ B 1 ? 16 ? 4NFQ 1 ? 16 ? 1 16 3 1 4NFQ C 1 ? 16 ? 4NFQ 1 ? 16 ? 1 16 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1510 ? 1 MORE -10 ? 1 'SSA (A^2)' 5930 ? 2 'ABSA (A^2)' 1500 ? 2 MORE -10 ? 2 'SSA (A^2)' 5920 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,D 2 1 B,C,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 128.8657281975 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 41.4237314780 # _struct_biol.id 1 _struct_biol.details 'Asymmetric unit contains 1.5 RNA duplexes' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 4 "O3'" ? ? ? 1_555 A 7AT 5 P ? ? A G 4 A 7AT 5 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale2 covale both ? A 7AT 5 "O3'" ? ? ? 1_555 A C 6 P ? ? A 7AT 5 A C 6 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale3 covale both ? B G 4 "O3'" ? ? ? 1_555 B 7AT 5 P ? ? B G 4 B 7AT 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale4 covale both ? B 7AT 5 "O3'" ? ? ? 1_555 B C 6 P ? ? B 7AT 5 B C 6 1_555 ? ? ? ? ? ? ? 1.630 ? ? covale5 covale both ? C G 4 "O3'" ? ? ? 1_555 C 7AT 5 P ? ? C G 4 C 7AT 5 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale6 covale both ? C 7AT 5 "O3'" ? ? ? 1_555 C C 6 P ? ? C 7AT 5 C C 6 1_555 ? ? ? ? ? ? ? 1.614 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 C C 16 N3 ? ? B G 1 C C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 C C 16 O2 ? ? B G 1 C C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 C C 16 N4 ? ? B G 1 C C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B C 2 N3 ? ? ? 1_555 C G 15 N1 ? ? B C 2 C G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B C 2 N4 ? ? ? 1_555 C G 15 O6 ? ? B C 2 C G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B C 2 O2 ? ? ? 1_555 C G 15 N2 ? ? B C 2 C G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B A 3 N1 ? ? ? 1_555 C U 14 N3 ? ? B A 3 C U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B A 3 N6 ? ? ? 1_555 C U 14 O4 ? ? B A 3 C U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 4 N1 ? ? ? 1_555 C C 13 N3 ? ? B G 4 C C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 4 N2 ? ? ? 1_555 C C 13 O2 ? ? B G 4 C C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 4 O6 ? ? ? 1_555 C C 13 N4 ? ? B G 4 C C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B C 6 N3 ? ? ? 1_555 C G 11 N1 ? ? B C 6 C G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B C 6 N4 ? ? ? 1_555 C G 11 O6 ? ? B C 6 C G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B C 6 O2 ? ? ? 1_555 C G 11 N2 ? ? B C 6 C G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B U 7 N3 ? ? ? 1_555 C A 10 N1 ? ? B U 7 C A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B U 7 O4 ? ? ? 1_555 C A 10 N6 ? ? B U 7 C A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B U 8 N3 ? ? ? 1_555 C A 9 N1 ? ? B U 8 C A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B U 8 O4 ? ? ? 1_555 C A 9 N6 ? ? B U 8 C A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B A 9 N1 ? ? ? 1_555 C U 8 N3 ? ? B A 9 C U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B A 9 N6 ? ? ? 1_555 C U 8 O4 ? ? B A 9 C U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B A 10 N1 ? ? ? 1_555 C U 7 N3 ? ? B A 10 C U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B A 10 N6 ? ? ? 1_555 C U 7 O4 ? ? B A 10 C U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B G 11 N1 ? ? ? 1_555 C C 6 N3 ? ? B G 11 C C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B G 11 N2 ? ? ? 1_555 C C 6 O2 ? ? B G 11 C C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 11 O6 ? ? ? 1_555 C C 6 N4 ? ? B G 11 C C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B C 13 N3 ? ? ? 1_555 C G 4 N1 ? ? B C 13 C G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B C 13 N4 ? ? ? 1_555 C G 4 O6 ? ? B C 13 C G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 13 O2 ? ? ? 1_555 C G 4 N2 ? ? B C 13 C G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B U 14 N3 ? ? ? 1_555 C A 3 N1 ? ? B U 14 C A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B U 14 O4 ? ? ? 1_555 C A 3 N6 ? ? B U 14 C A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B G 15 N1 ? ? ? 1_555 C C 2 N3 ? ? B G 15 C C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B G 15 N2 ? ? ? 1_555 C C 2 O2 ? ? B G 15 C C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B G 15 O6 ? ? ? 1_555 C C 2 N4 ? ? B G 15 C C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B C 16 N3 ? ? ? 1_555 C G 1 N1 ? ? B C 16 C G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 16 N4 ? ? ? 1_555 C G 1 O6 ? ? B C 16 C G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 16 O2 ? ? ? 1_555 C G 1 N2 ? ? B C 16 C G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 1 A C 16 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 1 A C 16 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 1 A C 16 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 2 A G 15 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 2 A G 15 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 2 A G 15 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 14 N3 ? ? A A 3 A U 14 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 14 O4 ? ? A A 3 A U 14 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 13 N3 ? ? A G 4 A C 13 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 13 O2 ? ? A G 4 A C 13 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 13 N4 ? ? A G 4 A C 13 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 11 N1 ? ? A C 6 A G 11 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 11 O6 ? ? A C 6 A G 11 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 11 N2 ? ? A C 6 A G 11 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 10 N1 ? ? A U 7 A A 10 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 10 N6 ? ? A U 7 A A 10 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 9 N1 ? ? A U 8 A A 9 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 9 N6 ? ? A U 8 A A 9 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 8 N3 ? ? A A 9 A U 8 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 8 O4 ? ? A A 9 A U 8 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 7 N3 ? ? A A 10 A U 7 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 7 O4 ? ? A A 10 A U 7 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 6 N3 ? ? A G 11 A C 6 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 6 O2 ? ? A G 11 A C 6 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 6 N4 ? ? A G 11 A C 6 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 4 N1 ? ? A C 13 A G 4 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 4 O6 ? ? A C 13 A G 4 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 4 N2 ? ? A C 13 A G 4 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 3 N1 ? ? A U 14 A A 3 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 3 N6 ? ? A U 14 A A 3 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 2 N3 ? ? A G 15 A C 2 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 2 O2 ? ? A G 15 A C 2 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 2 N4 ? ? A G 15 A C 2 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 1 N1 ? ? A C 16 A G 1 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 1 O6 ? ? A C 16 A G 1 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 1 N2 ? ? A C 16 A G 1 2_756 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" A G 1 ? ? "C4'" A G 1 ? ? "O4'" A G 1 ? ? 116.51 109.80 6.71 0.90 N 2 1 "O5'" A C 13 ? ? P A C 13 ? ? OP2 A C 13 ? ? 98.48 105.70 -7.22 0.90 N 3 1 "C5'" B G 1 ? ? "C4'" B G 1 ? ? "O4'" B G 1 ? ? 117.59 109.80 7.79 0.90 N 4 1 "O5'" B C 13 ? ? P B C 13 ? ? OP2 B C 13 ? ? 99.32 105.70 -6.38 0.90 N 5 1 "C5'" C G 1 ? ? "C4'" C G 1 ? ? "O4'" C G 1 ? ? 116.21 109.80 6.41 0.90 N 6 1 "O5'" C C 13 ? ? P C C 13 ? ? OP2 C C 13 ? ? 99.40 105.70 -6.30 0.90 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 7AT 5 A 7AT 5 ? A ? 2 B 7AT 5 B 7AT 5 ? A ? 3 C 7AT 5 C 7AT 5 ? A ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 61.2373 22.0689 34.7008 0.0650 0.2401 0.3270 0.0057 0.0216 0.1172 2.0774 7.4809 5.5927 0.2565 -0.4599 -3.6709 -0.1396 0.1059 0.1658 -0.4765 0.3526 0.7529 0.2240 -0.6587 -0.2129 'X-RAY DIFFRACTION' 2 ? refined 71.0300 21.3341 24.2589 0.1889 0.1266 0.2600 -0.0048 0.0608 0.0423 2.3645 9.3535 2.8181 -1.2825 -0.8368 5.1186 0.1702 0.3787 -0.0011 -0.3764 -0.0347 -0.1317 -0.2420 -0.0310 -0.1355 'X-RAY DIFFRACTION' 3 ? refined 61.0184 13.5171 13.9046 0.1374 0.1793 0.2619 -0.0078 -0.0629 -0.0386 4.2994 1.6241 2.2397 1.5209 2.1114 -0.3909 0.1640 0.1030 -0.4819 -0.0689 0.1452 -0.0576 0.1629 -0.0180 -0.3093 'X-RAY DIFFRACTION' 4 ? refined 60.0598 23.3765 2.5008 0.0728 0.1171 0.3323 -0.0363 0.1359 -0.0842 10.6638 6.4683 0.7804 -0.9392 0.3665 -1.0124 0.0627 0.3267 0.3016 -0.4913 0.2853 -0.4757 -0.0690 0.0616 -0.3480 'X-RAY DIFFRACTION' 5 ? refined 44.7879 38.0127 6.6951 0.1087 0.2135 0.5166 0.0554 0.1699 0.0245 3.6192 3.5229 14.4718 -1.1276 -2.3234 -3.3481 0.2225 -0.0117 0.5549 0.4461 0.0538 0.6981 -0.8971 -0.2260 -0.2762 'X-RAY DIFFRACTION' 6 ? refined 50.2250 29.9358 17.1770 0.2019 0.3172 0.2730 0.0338 0.0732 0.0280 8.4656 2.3539 3.0229 1.2342 4.6530 1.6792 -0.1807 -0.5877 -0.0477 0.5017 0.2927 -0.0980 0.1484 -0.1639 -0.1121 'X-RAY DIFFRACTION' 7 ? refined 51.9731 42.3953 27.5680 0.1702 0.1968 0.2369 -0.0409 0.0124 -0.0770 2.1779 5.8538 1.3886 -1.8649 -1.7243 1.4929 0.1127 -0.1449 0.3587 0.0629 0.1563 -0.4529 -0.0212 0.0824 -0.2690 'X-RAY DIFFRACTION' 8 ? refined 42.9212 38.3362 38.9466 0.0832 0.1048 0.2529 -0.0457 -0.1119 0.0199 6.5242 12.7501 1.7344 -2.2832 -1.7506 -1.2043 0.2957 -0.4014 -0.4819 0.4433 -0.0824 0.0398 0.0415 0.0039 -0.2133 'X-RAY DIFFRACTION' 9 ? refined 47.8897 32.4377 34.7148 0.2054 0.1898 0.3744 0.0381 -0.1061 -0.0931 3.9874 4.5388 10.2234 0.5613 4.1697 2.3042 0.1797 0.6744 -0.8185 0.0970 0.1575 -0.1944 0.4509 0.6500 -0.3372 'X-RAY DIFFRACTION' 10 ? refined 43.6228 41.2478 24.2593 0.1581 0.2112 0.2504 -0.0312 -0.0426 -0.0416 5.8515 6.8878 3.2402 3.9649 -4.2165 -3.7656 0.0466 0.1687 0.1049 -0.7396 0.0862 0.1291 0.1342 -0.1250 -0.1328 'X-RAY DIFFRACTION' 11 ? refined 55.4239 36.5655 13.9130 0.0820 0.2252 0.2554 -0.0412 0.1296 -0.0584 5.3431 3.3692 3.5001 -3.5571 -0.8056 2.3670 0.1173 -0.2054 0.4033 -0.0982 0.2322 -0.4509 -0.0508 0.0939 -0.3495 'X-RAY DIFFRACTION' 12 ? refined 47.3901 30.7850 2.4841 0.0205 0.1241 0.2379 0.0105 0.0401 0.0856 9.2759 11.0173 2.0975 -2.3077 1.8050 -0.3580 0.2021 0.4981 0.1720 -0.0759 0.2562 0.5729 0.0089 -0.1445 -0.4583 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 4 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 5 ? ? A 8 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 9 ? ? A 12 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 13 ? ? A 16 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 1 ? ? B 4 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 5 ? ? B 8 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 9 ? ? B 12 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 13 ? ? B 16 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 C 1 ? ? C 4 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 C 5 ? ? C 8 ? ? ? ? 'X-RAY DIFFRACTION' 11 11 C 9 ? ? C 12 ? ? ? ? 'X-RAY DIFFRACTION' 12 12 C 13 ? ? C 16 ? ? ? ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 7AT P P N N 1 7AT N1 N Y N 2 7AT C2 C Y N 3 7AT N3 N Y N 4 7AT C4 C Y N 5 7AT C5 C Y N 6 7AT C6 C Y N 7 7AT N6 N N N 8 7AT N9 N Y N 9 7AT "C1'" C N R 10 7AT "C2'" C N R 11 7AT "C3'" C N S 12 7AT "O3'" O N N 13 7AT "C4'" C N R 14 7AT "O4'" O N N 15 7AT "C5'" C N N 16 7AT "O5'" O N N 17 7AT OP1 O N N 18 7AT OP2 O N N 19 7AT N8 N Y N 20 7AT C7 C Y N 21 7AT C24 C Y N 22 7AT N28 N Y N 23 7AT N27 N Y N 24 7AT N26 N Y N 25 7AT C25 C Y N 26 7AT "O2'" O N N 27 7AT H1 H N N 28 7AT H2 H N N 29 7AT H3 H N N 30 7AT H4 H N N 31 7AT H5 H N N 32 7AT H6 H N N 33 7AT H7 H N N 34 7AT H8 H N N 35 7AT H9 H N N 36 7AT H10 H N N 37 7AT H12 H N N 38 7AT H13 H N N 39 7AT H14 H N N 40 7AT H15 H N N 41 7AT OP3 O N N 42 7AT HOP3 H N N 43 A OP3 O N N 44 A P P N N 45 A OP1 O N N 46 A OP2 O N N 47 A "O5'" O N N 48 A "C5'" C N N 49 A "C4'" C N R 50 A "O4'" O N N 51 A "C3'" C N S 52 A "O3'" O N N 53 A "C2'" C N R 54 A "O2'" O N N 55 A "C1'" C N R 56 A N9 N Y N 57 A C8 C Y N 58 A N7 N Y N 59 A C5 C Y N 60 A C6 C Y N 61 A N6 N N N 62 A N1 N Y N 63 A C2 C Y N 64 A N3 N Y N 65 A C4 C Y N 66 A HOP3 H N N 67 A HOP2 H N N 68 A "H5'" H N N 69 A "H5''" H N N 70 A "H4'" H N N 71 A "H3'" H N N 72 A "HO3'" H N N 73 A "H2'" H N N 74 A "HO2'" H N N 75 A "H1'" H N N 76 A H8 H N N 77 A H61 H N N 78 A H62 H N N 79 A H2 H N N 80 C OP3 O N N 81 C P P N N 82 C OP1 O N N 83 C OP2 O N N 84 C "O5'" O N N 85 C "C5'" C N N 86 C "C4'" C N R 87 C "O4'" O N N 88 C "C3'" C N S 89 C "O3'" O N N 90 C "C2'" C N R 91 C "O2'" O N N 92 C "C1'" C N R 93 C N1 N N N 94 C C2 C N N 95 C O2 O N N 96 C N3 N N N 97 C C4 C N N 98 C N4 N N N 99 C C5 C N N 100 C C6 C N N 101 C HOP3 H N N 102 C HOP2 H N N 103 C "H5'" H N N 104 C "H5''" H N N 105 C "H4'" H N N 106 C "H3'" H N N 107 C "HO3'" H N N 108 C "H2'" H N N 109 C "HO2'" H N N 110 C "H1'" H N N 111 C H41 H N N 112 C H42 H N N 113 C H5 H N N 114 C H6 H N N 115 G OP3 O N N 116 G P P N N 117 G OP1 O N N 118 G OP2 O N N 119 G "O5'" O N N 120 G "C5'" C N N 121 G "C4'" C N R 122 G "O4'" O N N 123 G "C3'" C N S 124 G "O3'" O N N 125 G "C2'" C N R 126 G "O2'" O N N 127 G "C1'" C N R 128 G N9 N Y N 129 G C8 C Y N 130 G N7 N Y N 131 G C5 C Y N 132 G C6 C N N 133 G O6 O N N 134 G N1 N N N 135 G C2 C N N 136 G N2 N N N 137 G N3 N N N 138 G C4 C Y N 139 G HOP3 H N N 140 G HOP2 H N N 141 G "H5'" H N N 142 G "H5''" H N N 143 G "H4'" H N N 144 G "H3'" H N N 145 G "HO3'" H N N 146 G "H2'" H N N 147 G "HO2'" H N N 148 G "H1'" H N N 149 G H8 H N N 150 G H1 H N N 151 G H21 H N N 152 G H22 H N N 153 HOH O O N N 154 HOH H1 H N N 155 HOH H2 H N N 156 U OP3 O N N 157 U P P N N 158 U OP1 O N N 159 U OP2 O N N 160 U "O5'" O N N 161 U "C5'" C N N 162 U "C4'" C N R 163 U "O4'" O N N 164 U "C3'" C N S 165 U "O3'" O N N 166 U "C2'" C N R 167 U "O2'" O N N 168 U "C1'" C N R 169 U N1 N N N 170 U C2 C N N 171 U O2 O N N 172 U N3 N N N 173 U C4 C N N 174 U O4 O N N 175 U C5 C N N 176 U C6 C N N 177 U HOP3 H N N 178 U HOP2 H N N 179 U "H5'" H N N 180 U "H5''" H N N 181 U "H4'" H N N 182 U "H3'" H N N 183 U "HO3'" H N N 184 U "H2'" H N N 185 U "HO2'" H N N 186 U "H1'" H N N 187 U H3 H N N 188 U H5 H N N 189 U H6 H N N 190 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7AT "O3'" "C3'" sing N N 1 7AT OP2 P sing N N 2 7AT OP1 P doub N N 3 7AT "C3'" "C2'" sing N N 4 7AT "C3'" "C4'" sing N N 5 7AT P "O5'" sing N N 6 7AT "O5'" "C5'" sing N N 7 7AT N27 N28 sing Y N 8 7AT N27 N26 doub Y N 9 7AT "C5'" "C4'" sing N N 10 7AT "C2'" "O2'" sing N N 11 7AT "C2'" "C1'" sing N N 12 7AT N28 C24 sing Y N 13 7AT "C4'" "O4'" sing N N 14 7AT N26 C25 sing Y N 15 7AT C24 C25 doub Y N 16 7AT C24 C7 sing N N 17 7AT N8 C7 doub Y N 18 7AT N8 N9 sing Y N 19 7AT C7 C5 sing Y N 20 7AT N9 "C1'" sing N N 21 7AT N9 C4 sing Y N 22 7AT "C1'" "O4'" sing N N 23 7AT C5 C4 doub Y N 24 7AT C5 C6 sing Y N 25 7AT C4 N3 sing Y N 26 7AT N6 C6 sing N N 27 7AT C6 N1 doub Y N 28 7AT N3 C2 doub Y N 29 7AT N1 C2 sing Y N 30 7AT C2 H1 sing N N 31 7AT N6 H2 sing N N 32 7AT N6 H3 sing N N 33 7AT "C1'" H4 sing N N 34 7AT "C2'" H5 sing N N 35 7AT "C3'" H6 sing N N 36 7AT "O3'" H7 sing N N 37 7AT "C4'" H8 sing N N 38 7AT "C5'" H9 sing N N 39 7AT "C5'" H10 sing N N 40 7AT OP2 H12 sing N N 41 7AT N28 H13 sing N N 42 7AT C25 H14 sing N N 43 7AT "O2'" H15 sing N N 44 7AT P OP3 sing N N 45 7AT OP3 HOP3 sing N N 46 A OP3 P sing N N 47 A OP3 HOP3 sing N N 48 A P OP1 doub N N 49 A P OP2 sing N N 50 A P "O5'" sing N N 51 A OP2 HOP2 sing N N 52 A "O5'" "C5'" sing N N 53 A "C5'" "C4'" sing N N 54 A "C5'" "H5'" sing N N 55 A "C5'" "H5''" sing N N 56 A "C4'" "O4'" sing N N 57 A "C4'" "C3'" sing N N 58 A "C4'" "H4'" sing N N 59 A "O4'" "C1'" sing N N 60 A "C3'" "O3'" sing N N 61 A "C3'" "C2'" sing N N 62 A "C3'" "H3'" sing N N 63 A "O3'" "HO3'" sing N N 64 A "C2'" "O2'" sing N N 65 A "C2'" "C1'" sing N N 66 A "C2'" "H2'" sing N N 67 A "O2'" "HO2'" sing N N 68 A "C1'" N9 sing N N 69 A "C1'" "H1'" sing N N 70 A N9 C8 sing Y N 71 A N9 C4 sing Y N 72 A C8 N7 doub Y N 73 A C8 H8 sing N N 74 A N7 C5 sing Y N 75 A C5 C6 sing Y N 76 A C5 C4 doub Y N 77 A C6 N6 sing N N 78 A C6 N1 doub Y N 79 A N6 H61 sing N N 80 A N6 H62 sing N N 81 A N1 C2 sing Y N 82 A C2 N3 doub Y N 83 A C2 H2 sing N N 84 A N3 C4 sing Y N 85 C OP3 P sing N N 86 C OP3 HOP3 sing N N 87 C P OP1 doub N N 88 C P OP2 sing N N 89 C P "O5'" sing N N 90 C OP2 HOP2 sing N N 91 C "O5'" "C5'" sing N N 92 C "C5'" "C4'" sing N N 93 C "C5'" "H5'" sing N N 94 C "C5'" "H5''" sing N N 95 C "C4'" "O4'" sing N N 96 C "C4'" "C3'" sing N N 97 C "C4'" "H4'" sing N N 98 C "O4'" "C1'" sing N N 99 C "C3'" "O3'" sing N N 100 C "C3'" "C2'" sing N N 101 C "C3'" "H3'" sing N N 102 C "O3'" "HO3'" sing N N 103 C "C2'" "O2'" sing N N 104 C "C2'" "C1'" sing N N 105 C "C2'" "H2'" sing N N 106 C "O2'" "HO2'" sing N N 107 C "C1'" N1 sing N N 108 C "C1'" "H1'" sing N N 109 C N1 C2 sing N N 110 C N1 C6 sing N N 111 C C2 O2 doub N N 112 C C2 N3 sing N N 113 C N3 C4 doub N N 114 C C4 N4 sing N N 115 C C4 C5 sing N N 116 C N4 H41 sing N N 117 C N4 H42 sing N N 118 C C5 C6 doub N N 119 C C5 H5 sing N N 120 C C6 H6 sing N N 121 G OP3 P sing N N 122 G OP3 HOP3 sing N N 123 G P OP1 doub N N 124 G P OP2 sing N N 125 G P "O5'" sing N N 126 G OP2 HOP2 sing N N 127 G "O5'" "C5'" sing N N 128 G "C5'" "C4'" sing N N 129 G "C5'" "H5'" sing N N 130 G "C5'" "H5''" sing N N 131 G "C4'" "O4'" sing N N 132 G "C4'" "C3'" sing N N 133 G "C4'" "H4'" sing N N 134 G "O4'" "C1'" sing N N 135 G "C3'" "O3'" sing N N 136 G "C3'" "C2'" sing N N 137 G "C3'" "H3'" sing N N 138 G "O3'" "HO3'" sing N N 139 G "C2'" "O2'" sing N N 140 G "C2'" "C1'" sing N N 141 G "C2'" "H2'" sing N N 142 G "O2'" "HO2'" sing N N 143 G "C1'" N9 sing N N 144 G "C1'" "H1'" sing N N 145 G N9 C8 sing Y N 146 G N9 C4 sing Y N 147 G C8 N7 doub Y N 148 G C8 H8 sing N N 149 G N7 C5 sing Y N 150 G C5 C6 sing N N 151 G C5 C4 doub Y N 152 G C6 O6 doub N N 153 G C6 N1 sing N N 154 G N1 C2 sing N N 155 G N1 H1 sing N N 156 G C2 N2 sing N N 157 G C2 N3 doub N N 158 G N2 H21 sing N N 159 G N2 H22 sing N N 160 G N3 C4 sing N N 161 HOH O H1 sing N N 162 HOH O H2 sing N N 163 U OP3 P sing N N 164 U OP3 HOP3 sing N N 165 U P OP1 doub N N 166 U P OP2 sing N N 167 U P "O5'" sing N N 168 U OP2 HOP2 sing N N 169 U "O5'" "C5'" sing N N 170 U "C5'" "C4'" sing N N 171 U "C5'" "H5'" sing N N 172 U "C5'" "H5''" sing N N 173 U "C4'" "O4'" sing N N 174 U "C4'" "C3'" sing N N 175 U "C4'" "H4'" sing N N 176 U "O4'" "C1'" sing N N 177 U "C3'" "O3'" sing N N 178 U "C3'" "C2'" sing N N 179 U "C3'" "H3'" sing N N 180 U "O3'" "HO3'" sing N N 181 U "C2'" "O2'" sing N N 182 U "C2'" "C1'" sing N N 183 U "C2'" "H2'" sing N N 184 U "O2'" "HO2'" sing N N 185 U "C1'" N1 sing N N 186 U "C1'" "H1'" sing N N 187 U N1 C2 sing N N 188 U N1 C6 sing N N 189 U C2 O2 doub N N 190 U C2 N3 sing N N 191 U N3 C4 sing N N 192 U N3 H3 sing N N 193 U C4 O4 doub N N 194 U C4 C5 sing N N 195 U C5 C6 doub N N 196 U C5 H5 sing N N 197 U C6 H6 sing N N 198 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4NFQ 'double helix' 4NFQ 'a-form double helix' 4NFQ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 C C 16 1_555 -0.259 -0.077 0.066 -0.918 -15.469 0.326 1 B_G1:C16_C B 1 ? C 16 ? 19 1 1 B C 2 1_555 C G 15 1_555 0.348 -0.104 0.004 4.345 -14.793 -1.432 2 B_C2:G15_C B 2 ? C 15 ? 19 1 1 B A 3 1_555 C U 14 1_555 0.278 -0.153 0.209 0.805 -7.817 4.235 3 B_A3:U14_C B 3 ? C 14 ? 20 1 1 B G 4 1_555 C C 13 1_555 -0.188 -0.104 0.089 0.946 -10.201 1.992 4 B_G4:C13_C B 4 ? C 13 ? 19 1 1 B C 6 1_555 C G 11 1_555 0.412 -0.165 -0.089 0.100 -13.033 1.871 5 B_C6:G11_C B 6 ? C 11 ? 19 1 1 B U 7 1_555 C A 10 1_555 -0.027 -0.125 -0.066 -4.092 -14.005 2.592 6 B_U7:A10_C B 7 ? C 10 ? 20 1 1 B U 8 1_555 C A 9 1_555 -0.064 -0.109 -0.114 -0.385 -10.629 5.002 7 B_U8:A9_C B 8 ? C 9 ? 20 1 1 B A 9 1_555 C U 8 1_555 -0.035 -0.057 -0.092 1.339 -9.866 4.232 8 B_A9:U8_C B 9 ? C 8 ? 20 1 1 B A 10 1_555 C U 7 1_555 0.081 -0.089 -0.073 4.244 -14.521 1.937 9 B_A10:U7_C B 10 ? C 7 ? 20 1 1 B G 11 1_555 C C 6 1_555 -0.392 -0.184 -0.106 0.252 -12.559 0.861 10 B_G11:C6_C B 11 ? C 6 ? 19 1 1 B C 13 1_555 C G 4 1_555 0.107 -0.136 0.094 -0.297 -11.310 1.638 11 B_C13:G4_C B 13 ? C 4 ? 19 1 1 B U 14 1_555 C A 3 1_555 -0.319 -0.099 0.222 -1.107 -7.950 4.509 12 B_U14:A3_C B 14 ? C 3 ? 20 1 1 B G 15 1_555 C C 2 1_555 -0.243 -0.074 0.056 -3.529 -14.514 1.352 13 B_G15:C2_C B 15 ? C 2 ? 19 1 1 B C 16 1_555 C G 1 1_555 0.449 -0.216 0.082 1.532 -15.362 1.577 14 B_C16:G1_C B 16 ? C 1 ? 19 1 1 A G 1 1_555 A C 16 2_756 -0.295 -0.228 0.131 -0.577 -15.406 -0.200 15 A_G1:C16_A A 1 ? A 16 ? 19 1 1 A C 2 1_555 A G 15 2_756 0.204 -0.107 -0.012 3.855 -14.566 -1.385 16 A_C2:G15_A A 2 ? A 15 ? 19 1 1 A A 3 1_555 A U 14 2_756 0.251 -0.105 0.210 0.744 -8.071 4.264 17 A_A3:U14_A A 3 ? A 14 ? 20 1 1 A G 4 1_555 A C 13 2_756 -0.110 -0.120 0.048 0.051 -11.044 1.353 18 A_G4:C13_A A 4 ? A 13 ? 19 1 1 A C 6 1_555 A G 11 2_756 0.424 -0.176 -0.109 0.143 -12.586 1.101 19 A_C6:G11_A A 6 ? A 11 ? 19 1 1 A U 7 1_555 A A 10 2_756 -0.059 -0.113 -0.051 -4.153 -13.763 3.308 20 A_U7:A10_A A 7 ? A 10 ? 20 1 1 A U 8 1_555 A A 9 2_756 -0.056 -0.119 -0.037 -0.978 -9.633 4.158 21 A_U8:A9_A A 8 ? A 9 ? 20 1 1 A A 9 1_555 A U 8 2_756 0.056 -0.119 -0.037 0.978 -9.633 4.158 22 A_A9:U8_A A 9 ? A 8 ? 20 1 1 A A 10 1_555 A U 7 2_756 0.059 -0.113 -0.051 4.153 -13.763 3.308 23 A_A10:U7_A A 10 ? A 7 ? 20 1 1 A G 11 1_555 A C 6 2_756 -0.424 -0.176 -0.109 -0.143 -12.586 1.100 24 A_G11:C6_A A 11 ? A 6 ? 19 1 1 A C 13 1_555 A G 4 2_756 0.110 -0.120 0.048 -0.051 -11.044 1.353 25 A_C13:G4_A A 13 ? A 4 ? 19 1 1 A U 14 1_555 A A 3 2_756 -0.251 -0.105 0.210 -0.744 -8.071 4.264 26 A_U14:A3_A A 14 ? A 3 ? 20 1 1 A G 15 1_555 A C 2 2_756 -0.204 -0.107 -0.012 -3.855 -14.566 -1.385 27 A_G15:C2_A A 15 ? A 2 ? 19 1 1 A C 16 1_555 A G 1 2_756 0.295 -0.228 0.131 0.577 -15.406 -0.200 28 A_C16:G1_A A 16 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 C C 16 1_555 B C 2 1_555 C G 15 1_555 -0.528 -1.449 3.103 -1.107 0.390 36.651 -2.354 0.695 3.102 0.621 1.759 36.669 1 BB_G1C2:G15C16_CC B 1 ? C 16 ? B 2 ? C 15 ? 1 B C 2 1_555 C G 15 1_555 B A 3 1_555 C U 14 1_555 0.267 -1.513 3.205 -0.807 10.230 33.467 -3.929 -0.555 2.636 17.267 1.361 34.962 2 BB_C2A3:U14G15_CC B 2 ? C 15 ? B 3 ? C 14 ? 1 B A 3 1_555 C U 14 1_555 B G 4 1_555 C C 13 1_555 0.022 -1.642 3.194 1.230 9.388 27.200 -5.189 0.202 2.498 19.237 -2.521 28.771 3 BB_A3G4:C13U14_CC B 3 ? C 14 ? B 4 ? C 13 ? 1 B G 4 1_555 C C 13 1_555 B C 6 1_555 C G 11 1_555 -0.312 -2.862 6.369 0.994 18.894 65.739 -3.876 0.348 5.464 17.043 -0.896 68.113 4 BB_G4C6:G11C13_CC B 4 ? C 13 ? B 6 ? C 11 ? 1 B C 6 1_555 C G 11 1_555 B U 7 1_555 C A 10 1_555 0.644 -1.897 3.272 3.563 11.574 28.765 -5.530 -0.584 2.409 22.101 -6.804 31.160 5 BB_C6U7:A10G11_CC B 6 ? C 11 ? B 7 ? C 10 ? 1 B U 7 1_555 C A 10 1_555 B U 8 1_555 C A 9 1_555 0.337 -1.652 3.204 1.667 6.341 29.443 -4.378 -0.331 2.809 12.285 -3.230 30.149 6 BB_U7U8:A9A10_CC B 7 ? C 10 ? B 8 ? C 9 ? 1 B U 8 1_555 C A 9 1_555 B A 9 1_555 C U 8 1_555 0.006 -1.374 3.158 -0.234 11.252 31.539 -4.056 -0.045 2.533 19.924 0.414 33.439 7 BB_U8A9:U8A9_CC B 8 ? C 9 ? B 9 ? C 8 ? 1 B A 9 1_555 C U 8 1_555 B A 10 1_555 C U 7 1_555 -0.345 -1.698 3.235 -1.532 6.293 29.660 -4.433 0.370 2.837 12.112 2.949 30.344 8 BB_A9A10:U7U8_CC B 9 ? C 8 ? B 10 ? C 7 ? 1 B A 10 1_555 C U 7 1_555 B G 11 1_555 C C 6 1_555 -0.667 -1.946 3.295 -3.459 10.864 28.718 -5.592 0.638 2.475 20.892 6.652 30.854 9 BB_A10G11:C6U7_CC B 10 ? C 7 ? B 11 ? C 6 ? 1 B G 11 1_555 C C 6 1_555 B C 13 1_555 C G 4 1_555 0.382 -2.904 6.358 -0.696 19.452 65.822 -3.931 -0.388 5.414 17.508 0.626 68.328 10 BB_G11C13:G4C6_CC B 11 ? C 6 ? B 13 ? C 4 ? 1 B C 13 1_555 C G 4 1_555 B U 14 1_555 C A 3 1_555 0.026 -1.644 3.227 -1.091 9.322 27.468 -5.148 -0.269 2.541 18.943 2.217 28.998 11 BB_C13U14:A3G4_CC B 13 ? C 4 ? B 14 ? C 3 ? 1 B U 14 1_555 C A 3 1_555 B G 15 1_555 C C 2 1_555 -0.233 -1.473 3.184 0.686 10.127 33.230 -3.881 0.487 2.631 17.215 -1.166 34.704 12 BB_U14G15:C2A3_CC B 14 ? C 3 ? B 15 ? C 2 ? 1 B G 15 1_555 C C 2 1_555 B C 16 1_555 C G 1 1_555 0.537 -1.436 3.105 1.522 0.554 37.228 -2.317 -0.650 3.102 0.868 -2.382 37.262 13 BB_G15C16:G1C2_CC B 15 ? C 2 ? B 16 ? C 1 ? 1 A G 1 1_555 A C 16 2_756 A C 2 1_555 A G 15 2_756 -0.544 -1.452 3.116 -0.752 0.365 36.889 -2.341 0.763 3.112 0.576 1.189 36.898 14 AA_G1C2:G15C16_AA A 1 ? A 16 ? A 2 ? A 15 ? 1 A C 2 1_555 A G 15 2_756 A A 3 1_555 A U 14 2_756 0.335 -1.529 3.213 -0.711 9.628 32.883 -3.990 -0.672 2.664 16.567 1.223 34.233 15 AA_C2A3:U14G15_AA A 2 ? A 15 ? A 3 ? A 14 ? 1 A A 3 1_555 A U 14 2_756 A G 4 1_555 A C 13 2_756 -0.039 -1.656 3.215 1.374 9.780 28.185 -5.051 0.334 2.508 19.346 -2.717 29.832 16 AA_A3G4:C13U14_AA A 3 ? A 14 ? A 4 ? A 13 ? 1 A G 4 1_555 A C 13 2_756 A C 6 1_555 A G 11 2_756 -0.334 -2.950 6.360 0.685 19.305 64.877 -4.032 0.350 5.394 17.593 -0.624 67.390 17 AA_G4C6:G11C13_AA A 4 ? A 13 ? A 6 ? A 11 ? 1 A C 6 1_555 A G 11 2_756 A U 7 1_555 A A 10 2_756 0.733 -1.905 3.271 3.454 11.310 29.231 -5.430 -0.764 2.452 21.341 -6.518 31.484 18 AA_C6U7:A10G11_AA A 6 ? A 11 ? A 7 ? A 10 ? 1 A U 7 1_555 A A 10 2_756 A U 8 1_555 A A 9 2_756 0.297 -1.685 3.222 1.040 6.154 28.980 -4.509 -0.376 2.821 12.120 -2.048 29.631 19 AA_U7U8:A9A10_AA A 7 ? A 10 ? A 8 ? A 9 ? 1 A U 8 1_555 A A 9 2_756 A A 9 1_555 A U 8 2_756 0.000 -1.443 3.124 0.000 10.419 32.203 -3.979 0.000 2.548 18.198 0.000 33.804 20 AA_U8A9:U8A9_AA A 8 ? A 9 ? A 9 ? A 8 ? 1 A A 9 1_555 A U 8 2_756 A A 10 1_555 A U 7 2_756 -0.297 -1.685 3.222 -1.040 6.154 28.980 -4.509 0.376 2.821 12.120 2.048 29.631 21 AA_A9A10:U7U8_AA A 9 ? A 8 ? A 10 ? A 7 ? 1 A A 10 1_555 A U 7 2_756 A G 11 1_555 A C 6 2_756 -0.733 -1.905 3.271 -3.454 11.310 29.231 -5.430 0.764 2.452 21.341 6.518 31.484 22 AA_A10G11:C6U7_AA A 10 ? A 7 ? A 11 ? A 6 ? 1 A G 11 1_555 A C 6 2_756 A C 13 1_555 A G 4 2_756 0.334 -2.950 6.360 -0.685 19.305 64.877 -4.032 -0.350 5.394 17.593 0.624 67.390 23 AA_G11C13:G4C6_AA A 11 ? A 6 ? A 13 ? A 4 ? 1 A C 13 1_555 A G 4 2_756 A U 14 1_555 A A 3 2_756 0.039 -1.656 3.215 -1.374 9.780 28.185 -5.051 -0.334 2.508 19.346 2.717 29.832 24 AA_C13U14:A3G4_AA A 13 ? A 4 ? A 14 ? A 3 ? 1 A U 14 1_555 A A 3 2_756 A G 15 1_555 A C 2 2_756 -0.335 -1.529 3.213 0.711 9.628 32.883 -3.990 0.672 2.664 16.567 -1.223 34.233 25 AA_U14G15:C2A3_AA A 14 ? A 3 ? A 15 ? A 2 ? 1 A G 15 1_555 A C 2 2_756 A C 16 1_555 A G 1 2_756 0.544 -1.452 3.116 0.752 0.365 36.889 -2.341 -0.763 3.112 0.577 -1.189 36.898 26 AA_G15C16:G1C2_AA A 15 ? A 2 ? A 16 ? A 1 ? # _atom_sites.entry_id 4NFQ _atom_sites.fract_transf_matrix[1][1] 0.012927 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008068 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022533 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024140 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_