HEADER TRANSFERASE 01-NOV-13 4NG6 TITLE THE EFFECTS OF LYSINE 200 AND PHENYLALANINE 239 FARNESYL PYROPHOSPHATE TITLE 2 SYNTHASE (FPPS) MUTATIONS ON THE CATALYTIC ACTIVITY, CRYSTAL TITLE 3 STRUCTURE AND INHIBITION BY NITROGEN CONTAINING BISPHOSPHONATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10, 2.5.1.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11 DERIVATIVE KEYWDS ALPHA-HELICAL PRENYLTRANSFERASE, ISOPRENE BIOSYNTHESIS, LIPID KEYWDS 2 SYNTHESIS, STEROID BIOSYNTHESIS, TRANSFERASE, ISOPRENOID PATHWAY, KEYWDS 3 CHOLESTEROL SYNTHESIS, BISPHOSPHONATES EXPDTA X-RAY DIFFRACTION AUTHOR M.K.TSOUMPRA,J.R.C.MUNIZ,B.L.BARNETT,E.PILKA,A.A.KWAASI,K.L.KAVANAGH, AUTHOR 2 A.EVDOKIMOV,R.L.WALTER,F.H.EBETINO,U.OPPERMANN,R.G.G.RUSSELL, AUTHOR 3 J.E.DUNFORD REVDAT 3 20-SEP-23 4NG6 1 REMARK SEQADV LINK REVDAT 2 22-NOV-17 4NG6 1 REMARK HETSYN REVDAT 1 19-NOV-14 4NG6 0 JRNL AUTH M.K.TSOUMPRA,J.R.C.MUNIZ,B.L.BARNETT,E.PILKA,A.A.KWAASI, JRNL AUTH 2 K.L.KAVANAGH,A.EVDOKIMOV,R.L.WALTER,F.H.EBETINO,U.OPPERMANN, JRNL AUTH 3 R.G.G.RUSSELL,J.E.DUNFORD JRNL TITL THE EFFECTS OF LYSINE 200 AND PHENYLALANINE 239 FARNESYL JRNL TITL 2 PYROPHOSPHATE SYNTHASE (FPPS) MUTATIONS ON THE CATALYTIC JRNL TITL 3 ACTIVITY, CRYSTAL STRUCTURE AND INHIBITION BY NITROGEN JRNL TITL 4 CONTAINING BISPHOSPHONATES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 17960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 914 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2808 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2200 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2663 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE : 0.2559 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.16 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2735 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.92500 REMARK 3 B22 (A**2) : 3.92500 REMARK 3 B33 (A**2) : -7.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.285 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.303 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2895 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3941 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1380 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 79 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 419 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2895 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 4 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 366 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3680 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.54 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.94 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|10 - 28} REMARK 3 ORIGIN FOR THE GROUP (A): -29.9387 -0.1906 26.7052 REMARK 3 T TENSOR REMARK 3 T11: -0.0960 T22: -0.0884 REMARK 3 T33: -0.0016 T12: -0.1036 REMARK 3 T13: 0.0295 T23: 0.1010 REMARK 3 L TENSOR REMARK 3 L11: 3.8608 L22: 3.1879 REMARK 3 L33: 0.1206 L12: -0.3238 REMARK 3 L13: -2.8538 L23: -2.3931 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: -0.0894 S13: -0.0419 REMARK 3 S21: 0.1140 S22: 0.0909 S23: -0.0403 REMARK 3 S31: 0.1856 S32: -0.3002 S33: -0.0508 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|29 - 52} REMARK 3 ORIGIN FOR THE GROUP (A): -24.4059 15.8204 33.5271 REMARK 3 T TENSOR REMARK 3 T11: -0.0512 T22: -0.0392 REMARK 3 T33: 0.2538 T12: -0.0021 REMARK 3 T13: 0.0483 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.5630 L22: 0.4108 REMARK 3 L33: 1.2944 L12: 1.0080 REMARK 3 L13: 0.8531 L23: -0.6067 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: -0.2231 S13: -0.0940 REMARK 3 S21: 0.2686 S22: -0.0692 S23: 0.0000 REMARK 3 S31: 0.0521 S32: 0.1588 S33: 0.0609 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|53 - 124} REMARK 3 ORIGIN FOR THE GROUP (A): -28.5394 5.5034 18.6291 REMARK 3 T TENSOR REMARK 3 T11: -0.0987 T22: -0.1290 REMARK 3 T33: 0.1592 T12: -0.0477 REMARK 3 T13: -0.0007 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.8316 L22: 3.2956 REMARK 3 L33: 1.1720 L12: -0.5622 REMARK 3 L13: 0.2829 L23: 0.0466 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: -0.0213 S13: -0.1362 REMARK 3 S21: 0.1455 S22: -0.0645 S23: 0.3547 REMARK 3 S31: 0.1889 S32: -0.0704 S33: 0.0200 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|125 - 152} REMARK 3 ORIGIN FOR THE GROUP (A): -17.9254 10.3491 23.1540 REMARK 3 T TENSOR REMARK 3 T11: -0.0327 T22: -0.0907 REMARK 3 T33: 0.0829 T12: -0.0173 REMARK 3 T13: -0.0228 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.3631 L22: 0.2656 REMARK 3 L33: 0.4346 L12: -0.4500 REMARK 3 L13: -0.1458 L23: 0.2933 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: -0.1861 S13: -0.0515 REMARK 3 S21: 0.3895 S22: 0.0015 S23: 0.0778 REMARK 3 S31: 0.1616 S32: -0.0080 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|153 - 177} REMARK 3 ORIGIN FOR THE GROUP (A): -18.9783 13.1343 8.3697 REMARK 3 T TENSOR REMARK 3 T11: -0.0544 T22: -0.1299 REMARK 3 T33: 0.1437 T12: -0.0225 REMARK 3 T13: -0.0100 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.0052 L22: 0.0365 REMARK 3 L33: 0.0000 L12: 0.5608 REMARK 3 L13: 0.3675 L23: 0.8268 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: 0.0861 S13: 0.0729 REMARK 3 S21: -0.1394 S22: 0.0159 S23: 0.0093 REMARK 3 S31: -0.0061 S32: 0.0355 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|178 - 206} REMARK 3 ORIGIN FOR THE GROUP (A): -29.7014 17.5351 -1.8460 REMARK 3 T TENSOR REMARK 3 T11: -0.0163 T22: -0.1677 REMARK 3 T33: 0.1557 T12: 0.0011 REMARK 3 T13: -0.0123 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 2.0801 L22: 2.1773 REMARK 3 L33: 0.0000 L12: 0.3630 REMARK 3 L13: 0.7924 L23: -0.0754 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: 0.2109 S13: 0.1331 REMARK 3 S21: -0.5212 S22: 0.1182 S23: -0.0251 REMARK 3 S31: -0.0495 S32: 0.1018 S33: -0.0962 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|207 - 249} REMARK 3 ORIGIN FOR THE GROUP (A): -26.2759 2.3097 3.8540 REMARK 3 T TENSOR REMARK 3 T11: -0.0345 T22: -0.2033 REMARK 3 T33: 0.1152 T12: -0.0160 REMARK 3 T13: -0.0745 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 0.5551 L22: 2.3605 REMARK 3 L33: 1.3221 L12: -0.4764 REMARK 3 L13: 0.5767 L23: -0.5405 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.0985 S13: 0.0646 REMARK 3 S21: -0.3516 S22: 0.0247 S23: -0.0158 REMARK 3 S31: 0.2491 S32: 0.0984 S33: -0.0211 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|250 - 294} REMARK 3 ORIGIN FOR THE GROUP (A): -43.0429 21.3347 -2.1507 REMARK 3 T TENSOR REMARK 3 T11: -0.0318 T22: -0.1636 REMARK 3 T33: 0.1958 T12: 0.0084 REMARK 3 T13: -0.1358 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.4070 L22: 2.5477 REMARK 3 L33: 0.0757 L12: -0.8648 REMARK 3 L13: 0.8563 L23: -0.7388 REMARK 3 S TENSOR REMARK 3 S11: 0.1378 S12: 0.1670 S13: 0.0012 REMARK 3 S21: -0.5442 S22: 0.0251 S23: 0.5442 REMARK 3 S31: 0.0182 S32: -0.2215 S33: -0.1629 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|295 - 332} REMARK 3 ORIGIN FOR THE GROUP (A): -41.9440 8.0732 -4.5873 REMARK 3 T TENSOR REMARK 3 T11: -0.0653 T22: -0.1861 REMARK 3 T33: 0.2243 T12: -0.0260 REMARK 3 T13: -0.1520 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.0110 L22: 0.5258 REMARK 3 L33: 1.1351 L12: 0.1954 REMARK 3 L13: -0.5177 L23: 0.5501 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: 0.1618 S13: 0.1063 REMARK 3 S21: -0.3717 S22: 0.0878 S23: 0.2531 REMARK 3 S31: 0.1470 S32: -0.2146 S33: -0.0271 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {A|333 - 353} REMARK 3 ORIGIN FOR THE GROUP (A): -32.5302 -5.1935 5.5256 REMARK 3 T TENSOR REMARK 3 T11: -0.0225 T22: -0.1441 REMARK 3 T33: 0.1580 T12: -0.0214 REMARK 3 T13: -0.0721 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 1.0944 L22: 2.2111 REMARK 3 L33: 0.4238 L12: 2.3841 REMARK 3 L13: 1.2053 L23: 1.6999 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: 0.0507 S13: -0.0469 REMARK 3 S21: -0.1268 S22: 0.0606 S23: 0.1814 REMARK 3 S31: 0.2591 S32: -0.0627 S33: -0.0418 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NG6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : 2011-02-03 REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 33.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : 0.16100 REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CP6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, PEG 6000, 10% ETHYLENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.30000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.87000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.65000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.87000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.95000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.87000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.87000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.65000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.87000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.87000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.95000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.30000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 556 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ASP A 8 REMARK 465 VAL A 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 10 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 MET A 33 CG SD CE REMARK 470 LYS A 76 NZ REMARK 470 GLU A 149 OE1 OE2 REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 LEU A 315 CG CD1 CD2 REMARK 470 LYS A 347 CD CE NZ REMARK 470 TYR A 349 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 351 CD NE CZ NH1 NH2 REMARK 470 ARG A 352 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 77 72.65 -66.65 REMARK 500 VAL A 124 -75.38 -104.89 REMARK 500 ALA A 178 63.82 -113.04 REMARK 500 THR A 201 -46.84 -131.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ASP A 107 OD2 96.9 REMARK 620 3 RIS A 405 O15 95.1 72.8 REMARK 620 4 RIS A 405 O12 98.8 156.0 87.8 REMARK 620 5 HOH A 513 O 174.6 81.7 79.5 81.0 REMARK 620 6 HOH A 533 O 92.4 109.8 171.7 87.5 92.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 107 OD2 97.6 REMARK 620 3 RIS A 405 O15 102.2 76.2 REMARK 620 4 HOH A 515 O 161.6 100.6 84.7 REMARK 620 5 HOH A 520 O 89.0 100.2 168.6 85.4 REMARK 620 6 HOH A 521 O 85.4 176.9 103.8 76.3 79.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 RIS A 405 O16 101.5 REMARK 620 3 RIS A 405 O11 88.4 92.6 REMARK 620 4 HOH A 510 O 88.7 168.2 81.6 REMARK 620 5 HOH A 511 O 172.2 86.2 90.1 83.5 REMARK 620 6 HOH A 512 O 95.9 91.9 173.1 93.0 84.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RIS A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KFA RELATED DB: PDB REMARK 900 FARNESYL PYROPJOSPHATE SYNTHASE (T201A) MUTANT COMPLEX WITH REMARK 900 ZOLEDRONATE REMARK 900 RELATED ID: 4KQ5 RELATED DB: PDB REMARK 900 FARNESYL PYROPJOSPHATE SYNTHASE (Y2044) MUTANT COMPLEX WITH REMARK 900 ZOLEDRONATE REMARK 900 RELATED ID: 4KQS RELATED DB: PDB REMARK 900 FARNESYL PYROPJOSPHATE SYNTHASE (Y201A) MUTANT COMPLEX WITH REMARK 900 RISEDRONATE REMARK 900 RELATED ID: 1YQ7 RELATED DB: PDB REMARK 900 FARNESYL PYROPJOSPHATE SYNTHASE COMPLEX WITH RISEDRONATE DBREF 4NG6 A 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 4NG6 MET A -21 UNP P14324 EXPRESSION TAG SEQADV 4NG6 GLY A -20 UNP P14324 EXPRESSION TAG SEQADV 4NG6 SER A -19 UNP P14324 EXPRESSION TAG SEQADV 4NG6 SER A -18 UNP P14324 EXPRESSION TAG SEQADV 4NG6 HIS A -17 UNP P14324 EXPRESSION TAG SEQADV 4NG6 HIS A -16 UNP P14324 EXPRESSION TAG SEQADV 4NG6 HIS A -15 UNP P14324 EXPRESSION TAG SEQADV 4NG6 HIS A -14 UNP P14324 EXPRESSION TAG SEQADV 4NG6 HIS A -13 UNP P14324 EXPRESSION TAG SEQADV 4NG6 HIS A -12 UNP P14324 EXPRESSION TAG SEQADV 4NG6 SER A -11 UNP P14324 EXPRESSION TAG SEQADV 4NG6 SER A -10 UNP P14324 EXPRESSION TAG SEQADV 4NG6 GLY A -9 UNP P14324 EXPRESSION TAG SEQADV 4NG6 ARG A -8 UNP P14324 EXPRESSION TAG SEQADV 4NG6 GLU A -7 UNP P14324 EXPRESSION TAG SEQADV 4NG6 ASN A -6 UNP P14324 EXPRESSION TAG SEQADV 4NG6 LEU A -5 UNP P14324 EXPRESSION TAG SEQADV 4NG6 TYR A -4 UNP P14324 EXPRESSION TAG SEQADV 4NG6 PHE A -3 UNP P14324 EXPRESSION TAG SEQADV 4NG6 GLN A -2 UNP P14324 EXPRESSION TAG SEQADV 4NG6 GLY A -1 UNP P14324 EXPRESSION TAG SEQADV 4NG6 HIS A 0 UNP P14324 EXPRESSION TAG SEQADV 4NG6 LEU A 200 UNP P14324 LYS 266 ENGINEERED MUTATION SEQRES 1 A 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 A 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 A 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 A 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 A 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 A 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 A 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 A 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 A 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 A 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 A 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 A 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 A 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 A 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 A 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 A 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 A 375 LEU THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 A 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 A 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 A 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 A 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 A 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 A 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 A 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 A 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 A 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 A 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 A 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET IPE A 404 14 HET RIS A 405 17 HETNAM MG MAGNESIUM ION HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM RIS 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID HETSYN IPE ISOPENTENYL PYROPHOSPHATE HETSYN RIS RISEDRONATE FORMUL 2 MG 3(MG 2+) FORMUL 5 IPE C5 H12 O7 P2 FORMUL 6 RIS C7 H11 N O7 P2 FORMUL 7 HOH *212(H2 O) HELIX 1 1 TYR A 10 GLN A 19 1 10 HELIX 2 2 HIS A 20 THR A 29 1 10 HELIX 3 3 GLU A 30 MET A 33 5 4 HELIX 4 4 HIS A 35 GLU A 37 5 3 HELIX 5 5 ILE A 38 ALA A 53 1 16 HELIX 6 6 TYR A 58 VAL A 72 1 15 HELIX 7 7 ASP A 78 ASP A 107 1 30 HELIX 8 8 TRP A 118 LYS A 121 5 4 HELIX 9 9 VAL A 124 LEU A 126 5 3 HELIX 10 10 ASP A 127 ARG A 148 1 22 HELIX 11 11 TYR A 152 ALA A 178 1 27 HELIX 12 12 ASP A 184 PHE A 188 5 5 HELIX 13 13 THR A 189 THR A 201 1 13 HELIX 14 14 THR A 201 PHE A 206 1 6 HELIX 15 15 PHE A 206 ALA A 217 1 12 HELIX 16 16 GLY A 221 GLY A 250 1 30 HELIX 17 17 ASP A 251 GLY A 256 1 6 HELIX 18 18 SER A 268 ALA A 278 1 11 HELIX 19 19 THR A 279 TYR A 290 1 12 HELIX 20 20 GLU A 294 LEU A 308 1 15 HELIX 21 21 ASP A 309 ALA A 333 1 25 HELIX 22 22 PRO A 337 TYR A 349 1 13 SHEET 1 A 2 THR A 111 ARG A 112 0 SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112 LINK OD2 ASP A 103 MG MG A 401 1555 1555 1.95 LINK OD1 ASP A 103 MG MG A 403 1555 1555 1.95 LINK OD2 ASP A 107 MG MG A 401 1555 1555 2.06 LINK OD2 ASP A 107 MG MG A 403 1555 1555 2.06 LINK OD2 ASP A 243 MG MG A 402 1555 1555 2.13 LINK MG MG A 401 O15 RIS A 405 1555 1555 2.20 LINK MG MG A 401 O12 RIS A 405 1555 1555 2.22 LINK MG MG A 401 O HOH A 513 1555 1555 1.94 LINK MG MG A 401 O HOH A 533 1555 1555 2.02 LINK MG MG A 402 O16 RIS A 405 1555 1555 2.06 LINK MG MG A 402 O11 RIS A 405 1555 1555 2.10 LINK MG MG A 402 O HOH A 510 1555 1555 2.22 LINK MG MG A 402 O HOH A 511 1555 1555 2.20 LINK MG MG A 402 O HOH A 512 1555 1555 1.95 LINK MG MG A 403 O15 RIS A 405 1555 1555 2.05 LINK MG MG A 403 O HOH A 515 1555 1555 2.31 LINK MG MG A 403 O HOH A 520 1555 1555 2.01 LINK MG MG A 403 O HOH A 521 1555 1555 2.00 CISPEP 1 ALA A 334 PRO A 335 0 5.16 SITE 1 AC1 6 ASP A 103 ASP A 107 MG A 403 RIS A 405 SITE 2 AC1 6 HOH A 513 HOH A 533 SITE 1 AC2 5 ASP A 243 RIS A 405 HOH A 510 HOH A 511 SITE 2 AC2 5 HOH A 512 SITE 1 AC3 7 ASP A 103 ASP A 107 MG A 401 RIS A 405 SITE 2 AC3 7 HOH A 515 HOH A 520 HOH A 521 SITE 1 AC4 18 GLY A 56 LYS A 57 ARG A 60 GLN A 96 SITE 2 AC4 18 ARG A 113 THR A 201 TYR A 204 SER A 205 SITE 3 AC4 18 PHE A 239 GLN A 240 ASP A 243 RIS A 405 SITE 4 AC4 18 HOH A 501 HOH A 516 HOH A 574 HOH A 577 SITE 5 AC4 18 HOH A 616 HOH A 683 SITE 1 AC5 22 ASP A 103 ASP A 107 ARG A 112 LEU A 200 SITE 2 AC5 22 THR A 201 GLN A 240 ASP A 243 LYS A 257 SITE 3 AC5 22 MG A 401 MG A 402 MG A 403 IPE A 404 SITE 4 AC5 22 HOH A 510 HOH A 511 HOH A 512 HOH A 513 SITE 5 AC5 22 HOH A 515 HOH A 521 HOH A 533 HOH A 534 SITE 6 AC5 22 HOH A 586 HOH A 601 CRYST1 111.740 111.740 66.600 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015015 0.00000