data_4NGG # _entry.id 4NGG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NGG pdb_00004ngg 10.2210/pdb4ngg/pdb NDB NA2757 ? ? RCSB RCSB083171 ? ? WWPDB D_1000083171 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NGB . unspecified PDB 4NGC . unspecified PDB 4NGD . unspecified PDB 4NGF . unspecified PDB 4NH3 . unspecified PDB 4NH5 . unspecified PDB 4NH6 . unspecified PDB 4NHA . unspecified # _pdbx_database_status.entry_id 4NGG _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-11-01 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Simanshu, D.K.' 1 'Tian, Y.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title 'A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 53 _citation.page_first 606 _citation.page_last 616 _citation.year 2014 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24486018 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2014.01.003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tian, Y.' 1 ? primary 'Simanshu, D.K.' 2 ? primary 'Ma, J.B.' 3 ? primary 'Park, J.E.' 4 ? primary 'Heo, I.' 5 ? primary 'Kim, V.N.' 6 ? primary 'Patel, D.J.' 7 ? # _cell.length_a 85.897 _cell.length_b 97.240 _cell.length_c 106.766 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4NGG _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.entry_id 4NGG _symmetry.Int_Tables_number 23 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Endoribonuclease Dicer' 34928.336 1 3.1.26.- K822A/K823A 'platform-PAZ-connector helix cassette (UNP residues 765-1065)' ? 2 polymer syn "5'-R(*AP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3'" 4118.485 1 ? ? ? siRNA 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 water nat water 18.015 21 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Helicase with RNase motif, Helicase MOI' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELAASGFMLSLQML ELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPR HLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLL ; ;SDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELAASGFMLSLQML ELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPR HLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLL ; A ? 2 polyribonucleotide no no AGCGAAUUCGCUU AGCGAAUUCGCUU B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASP n 1 3 GLN n 1 4 PRO n 1 5 CYS n 1 6 TYR n 1 7 LEU n 1 8 TYR n 1 9 VAL n 1 10 ILE n 1 11 GLY n 1 12 MET n 1 13 VAL n 1 14 LEU n 1 15 THR n 1 16 THR n 1 17 PRO n 1 18 LEU n 1 19 PRO n 1 20 ASP n 1 21 GLU n 1 22 LEU n 1 23 ASN n 1 24 PHE n 1 25 ARG n 1 26 ARG n 1 27 ARG n 1 28 LYS n 1 29 LEU n 1 30 TYR n 1 31 PRO n 1 32 PRO n 1 33 GLU n 1 34 ASP n 1 35 THR n 1 36 THR n 1 37 ARG n 1 38 CYS n 1 39 PHE n 1 40 GLY n 1 41 ILE n 1 42 LEU n 1 43 THR n 1 44 ALA n 1 45 LYS n 1 46 PRO n 1 47 ILE n 1 48 PRO n 1 49 GLN n 1 50 ILE n 1 51 PRO n 1 52 HIS n 1 53 PHE n 1 54 PRO n 1 55 VAL n 1 56 TYR n 1 57 THR n 1 58 ARG n 1 59 SER n 1 60 GLY n 1 61 GLU n 1 62 VAL n 1 63 THR n 1 64 ILE n 1 65 SER n 1 66 ILE n 1 67 GLU n 1 68 LEU n 1 69 ALA n 1 70 ALA n 1 71 SER n 1 72 GLY n 1 73 PHE n 1 74 MET n 1 75 LEU n 1 76 SER n 1 77 LEU n 1 78 GLN n 1 79 MET n 1 80 LEU n 1 81 GLU n 1 82 LEU n 1 83 ILE n 1 84 THR n 1 85 ARG n 1 86 LEU n 1 87 HIS n 1 88 GLN n 1 89 TYR n 1 90 ILE n 1 91 PHE n 1 92 SER n 1 93 HIS n 1 94 ILE n 1 95 LEU n 1 96 ARG n 1 97 LEU n 1 98 GLU n 1 99 LYS n 1 100 PRO n 1 101 ALA n 1 102 LEU n 1 103 GLU n 1 104 PHE n 1 105 LYS n 1 106 PRO n 1 107 THR n 1 108 ASP n 1 109 ALA n 1 110 ASP n 1 111 SER n 1 112 ALA n 1 113 TYR n 1 114 CYS n 1 115 VAL n 1 116 LEU n 1 117 PRO n 1 118 LEU n 1 119 ASN n 1 120 VAL n 1 121 VAL n 1 122 ASN n 1 123 ASP n 1 124 SER n 1 125 SER n 1 126 THR n 1 127 LEU n 1 128 ASP n 1 129 ILE n 1 130 ASP n 1 131 PHE n 1 132 LYS n 1 133 PHE n 1 134 MET n 1 135 GLU n 1 136 ASP n 1 137 ILE n 1 138 GLU n 1 139 LYS n 1 140 SER n 1 141 GLU n 1 142 ALA n 1 143 ARG n 1 144 ILE n 1 145 GLY n 1 146 ILE n 1 147 PRO n 1 148 SER n 1 149 THR n 1 150 LYS n 1 151 TYR n 1 152 THR n 1 153 LYS n 1 154 GLU n 1 155 THR n 1 156 PRO n 1 157 PHE n 1 158 VAL n 1 159 PHE n 1 160 LYS n 1 161 LEU n 1 162 GLU n 1 163 ASP n 1 164 TYR n 1 165 GLN n 1 166 ASP n 1 167 ALA n 1 168 VAL n 1 169 ILE n 1 170 ILE n 1 171 PRO n 1 172 ARG n 1 173 TYR n 1 174 ARG n 1 175 ASN n 1 176 PHE n 1 177 ASP n 1 178 GLN n 1 179 PRO n 1 180 HIS n 1 181 ARG n 1 182 PHE n 1 183 TYR n 1 184 VAL n 1 185 ALA n 1 186 ASP n 1 187 VAL n 1 188 TYR n 1 189 THR n 1 190 ASP n 1 191 LEU n 1 192 THR n 1 193 PRO n 1 194 LEU n 1 195 SER n 1 196 LYS n 1 197 PHE n 1 198 PRO n 1 199 SER n 1 200 PRO n 1 201 GLU n 1 202 TYR n 1 203 GLU n 1 204 THR n 1 205 PHE n 1 206 ALA n 1 207 GLU n 1 208 TYR n 1 209 TYR n 1 210 LYS n 1 211 THR n 1 212 LYS n 1 213 TYR n 1 214 ASN n 1 215 LEU n 1 216 ASP n 1 217 LEU n 1 218 THR n 1 219 ASN n 1 220 LEU n 1 221 ASN n 1 222 GLN n 1 223 PRO n 1 224 LEU n 1 225 LEU n 1 226 ASP n 1 227 VAL n 1 228 ASP n 1 229 HIS n 1 230 THR n 1 231 SER n 1 232 SER n 1 233 ARG n 1 234 LEU n 1 235 ASN n 1 236 LEU n 1 237 LEU n 1 238 THR n 1 239 PRO n 1 240 ARG n 1 241 HIS n 1 242 LEU n 1 243 ASN n 1 244 GLN n 1 245 LYS n 1 246 GLY n 1 247 LYS n 1 248 ALA n 1 249 LEU n 1 250 PRO n 1 251 LEU n 1 252 SER n 1 253 SER n 1 254 ALA n 1 255 GLU n 1 256 LYS n 1 257 ARG n 1 258 LYS n 1 259 ALA n 1 260 LYS n 1 261 TRP n 1 262 GLU n 1 263 SER n 1 264 LEU n 1 265 GLN n 1 266 ASN n 1 267 LYS n 1 268 GLN n 1 269 ILE n 1 270 LEU n 1 271 VAL n 1 272 PRO n 1 273 GLU n 1 274 LEU n 1 275 CYS n 1 276 ALA n 1 277 ILE n 1 278 HIS n 1 279 PRO n 1 280 ILE n 1 281 PRO n 1 282 ALA n 1 283 SER n 1 284 LEU n 1 285 TRP n 1 286 ARG n 1 287 LYS n 1 288 ALA n 1 289 VAL n 1 290 CYS n 1 291 LEU n 1 292 PRO n 1 293 SER n 1 294 ILE n 1 295 LEU n 1 296 TYR n 1 297 ARG n 1 298 LEU n 1 299 HIS n 1 300 CYS n 1 301 LEU n 1 302 LEU n 2 1 A n 2 2 G n 2 3 C n 2 4 G n 2 5 A n 2 6 A n 2 7 U n 2 8 U n 2 9 C n 2 10 G n 2 11 C n 2 12 U n 2 13 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DICER, DICER1, HERNA, KIAA0928' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DICER_HUMAN Q9UPY3 1 ;DQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLE LITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFKL EDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRH LNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLL ; 765 ? 2 PDB 4NGG 4NGG 2 AGCGAAUUCGCUU 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4NGG A 2 ? 302 ? Q9UPY3 765 ? 1065 ? 755 1055 2 2 4NGG B 1 ? 13 ? 4NGG 1 ? 13 ? 1 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4NGG SER A 1 ? UNP Q9UPY3 ? ? 'expression tag' 754 1 1 4NGG ALA A 69 ? UNP Q9UPY3 LYS 832 'engineered mutation' 822 2 1 4NGG ALA A 70 ? UNP Q9UPY3 LYS 833 'engineered mutation' 823 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4NGG _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.2 M sodium chloride, 0.1 M sodium/potassium phosphate, pH 6.0-6.4, 10% PEG8000, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-03-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Cryo-Cooled double crystal Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97949 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 4NGG _reflns.d_resolution_high 2.600 _reflns.d_resolution_low 50.0 _reflns.number_obs 14296 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_netI_over_sigmaI 9.5 _reflns.pdbx_chi_squared 1.269 _reflns.pdbx_redundancy 9.7 _reflns.percent_possible_obs 99.9 _reflns.B_iso_Wilson_estimate 53.7 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.600 2.690 ? ? ? 0.722 ? ? 0.586 9.0 ? 1400 100.0 1 1 2.690 2.800 ? ? ? 0.567 ? ? 0.623 9.8 ? 1419 100.0 2 1 2.800 2.930 ? ? ? 0.394 ? ? 0.659 10.0 ? 1388 100.0 3 1 2.930 3.080 ? ? ? 0.255 ? ? 0.732 10.0 ? 1418 100.0 4 1 3.080 3.280 ? ? ? 0.171 ? ? 0.898 10.0 ? 1421 100.0 5 1 3.280 3.530 ? ? ? 0.123 ? ? 1.134 10.0 ? 1430 100.0 6 1 3.530 3.880 ? ? ? 0.090 ? ? 1.566 9.9 ? 1407 100.0 7 1 3.880 4.450 ? ? ? 0.070 ? ? 2.108 9.8 ? 1449 100.0 8 1 4.450 5.600 ? ? ? 0.061 ? ? 2.456 9.5 ? 1451 100.0 9 1 5.600 50.000 ? ? ? 0.036 ? ? 1.902 8.9 ? 1513 99.3 10 1 # _refine.entry_id 4NGG _refine.ls_d_res_high 2.600 _refine.ls_d_res_low 33.421 _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.87 _refine.ls_number_reflns_obs 14068 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1888 _refine.ls_R_factor_R_work 0.1860 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2393 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.05 _refine.ls_number_reflns_R_free 711 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 54.6717 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.3600 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 4NGD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8016 _refine.B_iso_max 145.340 _refine.B_iso_min 22.870 _refine.pdbx_overall_phase_error 26.0600 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2157 _refine_hist.pdbx_number_atoms_nucleic_acid 270 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 2453 _refine_hist.d_res_high 2.600 _refine_hist.d_res_low 33.421 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 2521 0.008 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 3497 1.094 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 411 0.067 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 394 0.005 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 969 13.633 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.6000 2.8007 5 100.0 2647 . 0.2384 0.3329 . 120 . 2767 . . 'X-RAY DIFFRACTION' 2.8007 3.0823 5 100.0 2610 . 0.2307 0.2941 . 156 . 2766 . . 'X-RAY DIFFRACTION' 3.0823 3.5279 5 100.0 2643 . 0.2015 0.2648 . 150 . 2793 . . 'X-RAY DIFFRACTION' 3.5279 4.4432 5 100.0 2671 . 0.1679 0.2223 . 149 . 2820 . . 'X-RAY DIFFRACTION' 4.4432 33.4234 5 100.0 2786 . 0.1705 0.2104 . 136 . 2922 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4NGG _struct.title ;Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 13-mer siRNA having 5'-A and UU-3' ends (2.6 Angstrom resolution) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NGG _struct_keywords.pdbx_keywords HYDROLASE/RNA _struct_keywords.text 'PAZ domain, platform domain, connector helix, siRNA, RNase III domain, endoribonuclease, pre-miRNA, HYDROLASE-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 31 ? THR A 35 ? PRO A 784 THR A 788 5 ? 5 HELX_P HELX_P2 2 SER A 76 ? HIS A 93 ? SER A 829 HIS A 846 1 ? 18 HELX_P HELX_P3 3 ASP A 130 ? ALA A 142 ? ASP A 883 ALA A 895 1 ? 13 HELX_P HELX_P4 4 LYS A 160 ? GLN A 165 ? LYS A 913 GLN A 918 5 ? 6 HELX_P HELX_P5 5 THR A 204 ? ASN A 214 ? THR A 957 ASN A 967 1 ? 11 HELX_P HELX_P6 6 LYS A 258 ? GLN A 268 ? LYS A 1011 GLN A 1021 1 ? 11 HELX_P HELX_P7 7 VAL A 271 ? GLU A 273 ? VAL A 1024 GLU A 1026 5 ? 3 HELX_P HELX_P8 8 PRO A 281 ? VAL A 289 ? PRO A 1034 VAL A 1042 1 ? 9 HELX_P HELX_P9 9 CYS A 290 ? HIS A 299 ? CYS A 1043 HIS A 1052 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B A 1 N6 ? ? ? 1_555 B U 12 O4 ? ? B A 1 B U 12 4_565 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog2 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 11 N3 ? ? B G 2 B C 11 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 11 O2 ? ? B G 2 B C 11 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 11 N4 ? ? B G 2 B C 11 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 10 N1 ? ? B C 3 B G 10 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 10 O6 ? ? B C 3 B G 10 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 10 N2 ? ? B C 3 B G 10 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 9 N3 ? ? B G 4 B C 9 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 9 O2 ? ? B G 4 B C 9 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 9 N4 ? ? B G 4 B C 9 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B A 5 N1 ? ? ? 1_555 B U 8 N3 ? ? B A 5 B U 8 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B A 5 N6 ? ? ? 1_555 B U 8 O4 ? ? B A 5 B U 8 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B A 6 N1 ? ? ? 1_555 B U 7 N3 ? ? B A 6 B U 7 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B A 6 N6 ? ? ? 1_555 B U 7 O4 ? ? B A 6 B U 7 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 6 N1 ? ? B U 7 B A 6 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 6 N6 ? ? B U 7 B A 6 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 5 N1 ? ? B U 8 B A 5 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 5 N6 ? ? B U 8 B A 5 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B C 9 N3 ? ? ? 1_555 B G 4 N1 ? ? B C 9 B G 4 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B C 9 N4 ? ? ? 1_555 B G 4 O6 ? ? B C 9 B G 4 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B C 9 O2 ? ? ? 1_555 B G 4 N2 ? ? B C 9 B G 4 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 3 N3 ? ? B G 10 B C 3 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 3 O2 ? ? B G 10 B C 3 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 3 N4 ? ? B G 10 B C 3 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 2 N1 ? ? B C 11 B G 2 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 2 O6 ? ? B C 11 B G 2 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 2 N2 ? ? B C 11 B G 2 4_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 1 N6 ? ? B U 12 B A 1 4_565 ? ? ? ? ? ? 'U-A PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 53 ? THR A 57 ? PHE A 806 THR A 810 A 2 GLY A 60 ? PHE A 73 ? GLY A 813 PHE A 826 A 3 CYS A 5 ? PRO A 17 ? CYS A 758 PRO A 770 A 4 CYS A 38 ? THR A 43 ? CYS A 791 THR A 796 A 5 CYS A 114 ? VAL A 120 ? CYS A 867 VAL A 873 A 6 LEU A 127 ? ILE A 129 ? LEU A 880 ILE A 882 B 1 ILE A 269 ? LEU A 270 ? ILE A 1022 LEU A 1023 B 2 LEU A 224 ? HIS A 229 ? LEU A 977 HIS A 982 B 3 PHE A 182 ? TYR A 188 ? PHE A 935 TYR A 941 B 4 VAL A 168 ? PRO A 171 ? VAL A 921 PRO A 924 B 5 CYS A 275 ? ILE A 277 ? CYS A 1028 ILE A 1030 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 53 ? N PHE A 806 O ILE A 64 ? O ILE A 817 A 2 3 O THR A 63 ? O THR A 816 N VAL A 13 ? N VAL A 766 A 3 4 N TYR A 8 ? N TYR A 761 O ILE A 41 ? O ILE A 794 A 4 5 N LEU A 42 ? N LEU A 795 O CYS A 114 ? O CYS A 867 A 5 6 N ASN A 119 ? N ASN A 872 O ASP A 128 ? O ASP A 881 B 1 2 O LEU A 270 ? O LEU A 1023 N LEU A 225 ? N LEU A 978 B 2 3 O ASP A 226 ? O ASP A 979 N ASP A 186 ? N ASP A 939 B 3 4 O PHE A 182 ? O PHE A 935 N ILE A 169 ? N ILE A 922 B 4 5 N ILE A 170 ? N ILE A 923 O ALA A 276 ? O ALA A 1029 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id PO4 _struct_site.pdbx_auth_seq_id 1101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE PO4 A 1101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG A 25 ? ARG A 778 . ? 1_555 ? 2 AC1 5 ARG A 58 ? ARG A 811 . ? 1_555 ? 3 AC1 5 HIS A 229 ? HIS A 982 . ? 1_555 ? 4 AC1 5 SER A 231 ? SER A 984 . ? 1_555 ? 5 AC1 5 ARG A 233 ? ARG A 986 . ? 1_555 ? # _atom_sites.entry_id 4NGG _atom_sites.fract_transf_matrix[1][1] 0.011642 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010284 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009366 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 754 ? ? ? A . n A 1 2 ASP 2 755 ? ? ? A . n A 1 3 GLN 3 756 756 GLN GLN A . n A 1 4 PRO 4 757 757 PRO PRO A . n A 1 5 CYS 5 758 758 CYS CYS A . n A 1 6 TYR 6 759 759 TYR TYR A . n A 1 7 LEU 7 760 760 LEU LEU A . n A 1 8 TYR 8 761 761 TYR TYR A . n A 1 9 VAL 9 762 762 VAL VAL A . n A 1 10 ILE 10 763 763 ILE ILE A . n A 1 11 GLY 11 764 764 GLY GLY A . n A 1 12 MET 12 765 765 MET MET A . n A 1 13 VAL 13 766 766 VAL VAL A . n A 1 14 LEU 14 767 767 LEU LEU A . n A 1 15 THR 15 768 768 THR THR A . n A 1 16 THR 16 769 769 THR THR A . n A 1 17 PRO 17 770 770 PRO PRO A . n A 1 18 LEU 18 771 771 LEU LEU A . n A 1 19 PRO 19 772 772 PRO PRO A . n A 1 20 ASP 20 773 773 ASP ASP A . n A 1 21 GLU 21 774 774 GLU GLU A . n A 1 22 LEU 22 775 775 LEU LEU A . n A 1 23 ASN 23 776 776 ASN ASN A . n A 1 24 PHE 24 777 777 PHE PHE A . n A 1 25 ARG 25 778 778 ARG ARG A . n A 1 26 ARG 26 779 779 ARG ARG A . n A 1 27 ARG 27 780 780 ARG ARG A . n A 1 28 LYS 28 781 781 LYS LYS A . n A 1 29 LEU 29 782 782 LEU LEU A . n A 1 30 TYR 30 783 783 TYR TYR A . n A 1 31 PRO 31 784 784 PRO PRO A . n A 1 32 PRO 32 785 785 PRO PRO A . n A 1 33 GLU 33 786 786 GLU GLU A . n A 1 34 ASP 34 787 787 ASP ASP A . n A 1 35 THR 35 788 788 THR THR A . n A 1 36 THR 36 789 789 THR THR A . n A 1 37 ARG 37 790 790 ARG ARG A . n A 1 38 CYS 38 791 791 CYS CYS A . n A 1 39 PHE 39 792 792 PHE PHE A . n A 1 40 GLY 40 793 793 GLY GLY A . n A 1 41 ILE 41 794 794 ILE ILE A . n A 1 42 LEU 42 795 795 LEU LEU A . n A 1 43 THR 43 796 796 THR THR A . n A 1 44 ALA 44 797 797 ALA ALA A . n A 1 45 LYS 45 798 798 LYS LYS A . n A 1 46 PRO 46 799 799 PRO PRO A . n A 1 47 ILE 47 800 800 ILE ILE A . n A 1 48 PRO 48 801 801 PRO PRO A . n A 1 49 GLN 49 802 802 GLN GLN A . n A 1 50 ILE 50 803 803 ILE ILE A . n A 1 51 PRO 51 804 804 PRO PRO A . n A 1 52 HIS 52 805 805 HIS HIS A . n A 1 53 PHE 53 806 806 PHE PHE A . n A 1 54 PRO 54 807 807 PRO PRO A . n A 1 55 VAL 55 808 808 VAL VAL A . n A 1 56 TYR 56 809 809 TYR TYR A . n A 1 57 THR 57 810 810 THR THR A . n A 1 58 ARG 58 811 811 ARG ARG A . n A 1 59 SER 59 812 812 SER SER A . n A 1 60 GLY 60 813 813 GLY GLY A . n A 1 61 GLU 61 814 814 GLU GLU A . n A 1 62 VAL 62 815 815 VAL VAL A . n A 1 63 THR 63 816 816 THR THR A . n A 1 64 ILE 64 817 817 ILE ILE A . n A 1 65 SER 65 818 818 SER SER A . n A 1 66 ILE 66 819 819 ILE ILE A . n A 1 67 GLU 67 820 820 GLU GLU A . n A 1 68 LEU 68 821 821 LEU LEU A . n A 1 69 ALA 69 822 822 ALA ALA A . n A 1 70 ALA 70 823 823 ALA ALA A . n A 1 71 SER 71 824 824 SER SER A . n A 1 72 GLY 72 825 825 GLY GLY A . n A 1 73 PHE 73 826 826 PHE PHE A . n A 1 74 MET 74 827 827 MET MET A . n A 1 75 LEU 75 828 828 LEU LEU A . n A 1 76 SER 76 829 829 SER SER A . n A 1 77 LEU 77 830 830 LEU LEU A . n A 1 78 GLN 78 831 831 GLN GLN A . n A 1 79 MET 79 832 832 MET MET A . n A 1 80 LEU 80 833 833 LEU LEU A . n A 1 81 GLU 81 834 834 GLU GLU A . n A 1 82 LEU 82 835 835 LEU LEU A . n A 1 83 ILE 83 836 836 ILE ILE A . n A 1 84 THR 84 837 837 THR THR A . n A 1 85 ARG 85 838 838 ARG ARG A . n A 1 86 LEU 86 839 839 LEU LEU A . n A 1 87 HIS 87 840 840 HIS HIS A . n A 1 88 GLN 88 841 841 GLN GLN A . n A 1 89 TYR 89 842 842 TYR TYR A . n A 1 90 ILE 90 843 843 ILE ILE A . n A 1 91 PHE 91 844 844 PHE PHE A . n A 1 92 SER 92 845 845 SER SER A . n A 1 93 HIS 93 846 846 HIS HIS A . n A 1 94 ILE 94 847 847 ILE ILE A . n A 1 95 LEU 95 848 848 LEU LEU A . n A 1 96 ARG 96 849 849 ARG ARG A . n A 1 97 LEU 97 850 850 LEU LEU A . n A 1 98 GLU 98 851 851 GLU GLU A . n A 1 99 LYS 99 852 ? ? ? A . n A 1 100 PRO 100 853 ? ? ? A . n A 1 101 ALA 101 854 ? ? ? A . n A 1 102 LEU 102 855 ? ? ? A . n A 1 103 GLU 103 856 ? ? ? A . n A 1 104 PHE 104 857 ? ? ? A . n A 1 105 LYS 105 858 ? ? ? A . n A 1 106 PRO 106 859 ? ? ? A . n A 1 107 THR 107 860 ? ? ? A . n A 1 108 ASP 108 861 ? ? ? A . n A 1 109 ALA 109 862 ? ? ? A . n A 1 110 ASP 110 863 ? ? ? A . n A 1 111 SER 111 864 ? ? ? A . n A 1 112 ALA 112 865 ? ? ? A . n A 1 113 TYR 113 866 866 TYR TYR A . n A 1 114 CYS 114 867 867 CYS CYS A . n A 1 115 VAL 115 868 868 VAL VAL A . n A 1 116 LEU 116 869 869 LEU LEU A . n A 1 117 PRO 117 870 870 PRO PRO A . n A 1 118 LEU 118 871 871 LEU LEU A . n A 1 119 ASN 119 872 872 ASN ASN A . n A 1 120 VAL 120 873 873 VAL VAL A . n A 1 121 VAL 121 874 874 VAL VAL A . n A 1 122 ASN 122 875 875 ASN ASN A . n A 1 123 ASP 123 876 876 ASP ASP A . n A 1 124 SER 124 877 ? ? ? A . n A 1 125 SER 125 878 878 SER SER A . n A 1 126 THR 126 879 879 THR THR A . n A 1 127 LEU 127 880 880 LEU LEU A . n A 1 128 ASP 128 881 881 ASP ASP A . n A 1 129 ILE 129 882 882 ILE ILE A . n A 1 130 ASP 130 883 883 ASP ASP A . n A 1 131 PHE 131 884 884 PHE PHE A . n A 1 132 LYS 132 885 885 LYS LYS A . n A 1 133 PHE 133 886 886 PHE PHE A . n A 1 134 MET 134 887 887 MET MET A . n A 1 135 GLU 135 888 888 GLU GLU A . n A 1 136 ASP 136 889 889 ASP ASP A . n A 1 137 ILE 137 890 890 ILE ILE A . n A 1 138 GLU 138 891 891 GLU GLU A . n A 1 139 LYS 139 892 892 LYS LYS A . n A 1 140 SER 140 893 893 SER SER A . n A 1 141 GLU 141 894 894 GLU GLU A . n A 1 142 ALA 142 895 895 ALA ALA A . n A 1 143 ARG 143 896 896 ARG ARG A . n A 1 144 ILE 144 897 897 ILE ILE A . n A 1 145 GLY 145 898 898 GLY GLY A . n A 1 146 ILE 146 899 899 ILE ILE A . n A 1 147 PRO 147 900 900 PRO PRO A . n A 1 148 SER 148 901 901 SER SER A . n A 1 149 THR 149 902 902 THR THR A . n A 1 150 LYS 150 903 903 LYS LYS A . n A 1 151 TYR 151 904 904 TYR TYR A . n A 1 152 THR 152 905 905 THR THR A . n A 1 153 LYS 153 906 906 LYS LYS A . n A 1 154 GLU 154 907 907 GLU GLU A . n A 1 155 THR 155 908 908 THR THR A . n A 1 156 PRO 156 909 909 PRO PRO A . n A 1 157 PHE 157 910 910 PHE PHE A . n A 1 158 VAL 158 911 911 VAL VAL A . n A 1 159 PHE 159 912 912 PHE PHE A . n A 1 160 LYS 160 913 913 LYS LYS A . n A 1 161 LEU 161 914 914 LEU LEU A . n A 1 162 GLU 162 915 915 GLU GLU A . n A 1 163 ASP 163 916 916 ASP ASP A . n A 1 164 TYR 164 917 917 TYR TYR A . n A 1 165 GLN 165 918 918 GLN GLN A . n A 1 166 ASP 166 919 919 ASP ASP A . n A 1 167 ALA 167 920 920 ALA ALA A . n A 1 168 VAL 168 921 921 VAL VAL A . n A 1 169 ILE 169 922 922 ILE ILE A . n A 1 170 ILE 170 923 923 ILE ILE A . n A 1 171 PRO 171 924 924 PRO PRO A . n A 1 172 ARG 172 925 925 ARG ARG A . n A 1 173 TYR 173 926 926 TYR TYR A . n A 1 174 ARG 174 927 927 ARG ARG A . n A 1 175 ASN 175 928 928 ASN ASN A . n A 1 176 PHE 176 929 929 PHE PHE A . n A 1 177 ASP 177 930 930 ASP ASP A . n A 1 178 GLN 178 931 931 GLN GLN A . n A 1 179 PRO 179 932 932 PRO PRO A . n A 1 180 HIS 180 933 933 HIS HIS A . n A 1 181 ARG 181 934 934 ARG ARG A . n A 1 182 PHE 182 935 935 PHE PHE A . n A 1 183 TYR 183 936 936 TYR TYR A . n A 1 184 VAL 184 937 937 VAL VAL A . n A 1 185 ALA 185 938 938 ALA ALA A . n A 1 186 ASP 186 939 939 ASP ASP A . n A 1 187 VAL 187 940 940 VAL VAL A . n A 1 188 TYR 188 941 941 TYR TYR A . n A 1 189 THR 189 942 942 THR THR A . n A 1 190 ASP 190 943 943 ASP ASP A . n A 1 191 LEU 191 944 944 LEU LEU A . n A 1 192 THR 192 945 945 THR THR A . n A 1 193 PRO 193 946 946 PRO PRO A . n A 1 194 LEU 194 947 947 LEU LEU A . n A 1 195 SER 195 948 948 SER SER A . n A 1 196 LYS 196 949 949 LYS LYS A . n A 1 197 PHE 197 950 950 PHE PHE A . n A 1 198 PRO 198 951 951 PRO PRO A . n A 1 199 SER 199 952 952 SER SER A . n A 1 200 PRO 200 953 953 PRO PRO A . n A 1 201 GLU 201 954 954 GLU GLU A . n A 1 202 TYR 202 955 955 TYR TYR A . n A 1 203 GLU 203 956 956 GLU GLU A . n A 1 204 THR 204 957 957 THR THR A . n A 1 205 PHE 205 958 958 PHE PHE A . n A 1 206 ALA 206 959 959 ALA ALA A . n A 1 207 GLU 207 960 960 GLU GLU A . n A 1 208 TYR 208 961 961 TYR TYR A . n A 1 209 TYR 209 962 962 TYR TYR A . n A 1 210 LYS 210 963 963 LYS LYS A . n A 1 211 THR 211 964 964 THR THR A . n A 1 212 LYS 212 965 965 LYS LYS A . n A 1 213 TYR 213 966 966 TYR TYR A . n A 1 214 ASN 214 967 967 ASN ASN A . n A 1 215 LEU 215 968 968 LEU LEU A . n A 1 216 ASP 216 969 969 ASP ASP A . n A 1 217 LEU 217 970 970 LEU LEU A . n A 1 218 THR 218 971 971 THR THR A . n A 1 219 ASN 219 972 972 ASN ASN A . n A 1 220 LEU 220 973 973 LEU LEU A . n A 1 221 ASN 221 974 974 ASN ASN A . n A 1 222 GLN 222 975 975 GLN GLN A . n A 1 223 PRO 223 976 976 PRO PRO A . n A 1 224 LEU 224 977 977 LEU LEU A . n A 1 225 LEU 225 978 978 LEU LEU A . n A 1 226 ASP 226 979 979 ASP ASP A . n A 1 227 VAL 227 980 980 VAL VAL A . n A 1 228 ASP 228 981 981 ASP ASP A . n A 1 229 HIS 229 982 982 HIS HIS A . n A 1 230 THR 230 983 983 THR THR A . n A 1 231 SER 231 984 984 SER SER A . n A 1 232 SER 232 985 985 SER SER A . n A 1 233 ARG 233 986 986 ARG ARG A . n A 1 234 LEU 234 987 987 LEU LEU A . n A 1 235 ASN 235 988 988 ASN ASN A . n A 1 236 LEU 236 989 989 LEU LEU A . n A 1 237 LEU 237 990 990 LEU LEU A . n A 1 238 THR 238 991 991 THR THR A . n A 1 239 PRO 239 992 992 PRO PRO A . n A 1 240 ARG 240 993 993 ARG ARG A . n A 1 241 HIS 241 994 ? ? ? A . n A 1 242 LEU 242 995 ? ? ? A . n A 1 243 ASN 243 996 ? ? ? A . n A 1 244 GLN 244 997 ? ? ? A . n A 1 245 LYS 245 998 ? ? ? A . n A 1 246 GLY 246 999 ? ? ? A . n A 1 247 LYS 247 1000 ? ? ? A . n A 1 248 ALA 248 1001 ? ? ? A . n A 1 249 LEU 249 1002 ? ? ? A . n A 1 250 PRO 250 1003 ? ? ? A . n A 1 251 LEU 251 1004 ? ? ? A . n A 1 252 SER 252 1005 ? ? ? A . n A 1 253 SER 253 1006 ? ? ? A . n A 1 254 ALA 254 1007 ? ? ? A . n A 1 255 GLU 255 1008 ? ? ? A . n A 1 256 LYS 256 1009 ? ? ? A . n A 1 257 ARG 257 1010 1010 ARG ALA A . n A 1 258 LYS 258 1011 1011 LYS LYS A . n A 1 259 ALA 259 1012 1012 ALA ALA A . n A 1 260 LYS 260 1013 1013 LYS LYS A . n A 1 261 TRP 261 1014 1014 TRP TRP A . n A 1 262 GLU 262 1015 1015 GLU GLU A . n A 1 263 SER 263 1016 1016 SER SER A . n A 1 264 LEU 264 1017 1017 LEU LEU A . n A 1 265 GLN 265 1018 1018 GLN GLN A . n A 1 266 ASN 266 1019 1019 ASN ASN A . n A 1 267 LYS 267 1020 1020 LYS LYS A . n A 1 268 GLN 268 1021 1021 GLN GLN A . n A 1 269 ILE 269 1022 1022 ILE ILE A . n A 1 270 LEU 270 1023 1023 LEU LEU A . n A 1 271 VAL 271 1024 1024 VAL VAL A . n A 1 272 PRO 272 1025 1025 PRO PRO A . n A 1 273 GLU 273 1026 1026 GLU GLU A . n A 1 274 LEU 274 1027 1027 LEU LEU A . n A 1 275 CYS 275 1028 1028 CYS CYS A . n A 1 276 ALA 276 1029 1029 ALA ALA A . n A 1 277 ILE 277 1030 1030 ILE ILE A . n A 1 278 HIS 278 1031 1031 HIS HIS A . n A 1 279 PRO 279 1032 1032 PRO PRO A . n A 1 280 ILE 280 1033 1033 ILE ILE A . n A 1 281 PRO 281 1034 1034 PRO PRO A . n A 1 282 ALA 282 1035 1035 ALA ALA A . n A 1 283 SER 283 1036 1036 SER SER A . n A 1 284 LEU 284 1037 1037 LEU LEU A . n A 1 285 TRP 285 1038 1038 TRP TRP A . n A 1 286 ARG 286 1039 1039 ARG ARG A . n A 1 287 LYS 287 1040 1040 LYS LYS A . n A 1 288 ALA 288 1041 1041 ALA ALA A . n A 1 289 VAL 289 1042 1042 VAL VAL A . n A 1 290 CYS 290 1043 1043 CYS CYS A . n A 1 291 LEU 291 1044 1044 LEU LEU A . n A 1 292 PRO 292 1045 1045 PRO PRO A . n A 1 293 SER 293 1046 1046 SER SER A . n A 1 294 ILE 294 1047 1047 ILE ILE A . n A 1 295 LEU 295 1048 1048 LEU LEU A . n A 1 296 TYR 296 1049 1049 TYR TYR A . n A 1 297 ARG 297 1050 1050 ARG ARG A . n A 1 298 LEU 298 1051 1051 LEU LEU A . n A 1 299 HIS 299 1052 1052 HIS HIS A . n A 1 300 CYS 300 1053 1053 CYS CYS A . n A 1 301 LEU 301 1054 ? ? ? A . n A 1 302 LEU 302 1055 ? ? ? A . n B 2 1 A 1 1 1 A A B . n B 2 2 G 2 2 2 G G B . n B 2 3 C 3 3 3 C C B . n B 2 4 G 4 4 4 G G B . n B 2 5 A 5 5 5 A A B . n B 2 6 A 6 6 6 A A B . n B 2 7 U 7 7 7 U U B . n B 2 8 U 8 8 8 U U B . n B 2 9 C 9 9 9 C C B . n B 2 10 G 10 10 10 G G B . n B 2 11 C 11 11 11 C C B . n B 2 12 U 12 12 12 U U B . n B 2 13 U 13 13 13 U U B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 1 1101 1 PO4 PO4 A . D 4 HOH 1 1201 1 HOH HOH A . D 4 HOH 2 1202 2 HOH HOH A . D 4 HOH 3 1203 3 HOH HOH A . D 4 HOH 4 1204 4 HOH HOH A . D 4 HOH 5 1205 5 HOH HOH A . D 4 HOH 6 1206 6 HOH HOH A . D 4 HOH 7 1207 7 HOH HOH A . D 4 HOH 8 1208 8 HOH HOH A . D 4 HOH 9 1209 9 HOH HOH A . D 4 HOH 10 1210 10 HOH HOH A . D 4 HOH 11 1211 11 HOH HOH A . D 4 HOH 12 1212 12 HOH HOH A . D 4 HOH 13 1213 13 HOH HOH A . D 4 HOH 14 1214 14 HOH HOH A . D 4 HOH 15 1215 15 HOH HOH A . D 4 HOH 16 1216 16 HOH HOH A . D 4 HOH 17 1217 17 HOH HOH A . D 4 HOH 18 1218 18 HOH HOH A . D 4 HOH 19 1219 19 HOH HOH A . D 4 HOH 20 1220 20 HOH HOH A . D 4 HOH 21 1221 21 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? trimeric 3 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 B 1 2 A,B,C,D 2 2,1 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3500 ? 2 MORE -34 ? 2 'SSA (A^2)' 33660 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 97.2400000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 2 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-05 2 'Structure model' 1 1 2014-03-12 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_ref_seq_dif.details' 13 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -7.6471 _pdbx_refine_tls.origin_y 27.2647 _pdbx_refine_tls.origin_z 14.7966 _pdbx_refine_tls.T[1][1] 0.3411 _pdbx_refine_tls.T[2][2] 0.3231 _pdbx_refine_tls.T[3][3] 0.3388 _pdbx_refine_tls.T[1][2] 0.0123 _pdbx_refine_tls.T[1][3] -0.0316 _pdbx_refine_tls.T[2][3] -0.0111 _pdbx_refine_tls.L[1][1] 2.2340 _pdbx_refine_tls.L[2][2] 1.9375 _pdbx_refine_tls.L[3][3] 1.0690 _pdbx_refine_tls.L[1][2] 0.3653 _pdbx_refine_tls.L[1][3] 0.0908 _pdbx_refine_tls.L[2][3] 0.4346 _pdbx_refine_tls.S[1][1] -0.1068 _pdbx_refine_tls.S[2][2] -0.0421 _pdbx_refine_tls.S[3][3] 0.1140 _pdbx_refine_tls.S[1][2] 0.0793 _pdbx_refine_tls.S[1][3] 0.3993 _pdbx_refine_tls.S[2][3] 0.3757 _pdbx_refine_tls.S[2][1] -0.1023 _pdbx_refine_tls.S[3][1] -0.1206 _pdbx_refine_tls.S[3][2] -0.0678 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 756 A 1221 all ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 B 1 B 13 all ? ? ? ? ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX 1.8.2_1309 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 802 ? ? -39.53 134.06 2 1 ASN A 875 ? ? -28.15 -39.28 3 1 GLN A 918 ? ? -86.69 -70.95 4 1 ASP A 919 ? ? -91.77 41.79 5 1 SER A 985 ? ? -143.75 -7.04 6 1 SER A 1016 ? ? -55.18 -77.22 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 756 ? CG ? A GLN 3 CG 2 1 Y 1 A GLN 756 ? CD ? A GLN 3 CD 3 1 Y 1 A GLN 756 ? OE1 ? A GLN 3 OE1 4 1 Y 1 A GLN 756 ? NE2 ? A GLN 3 NE2 5 1 Y 1 A ASN 875 ? CG ? A ASN 122 CG 6 1 Y 1 A ASN 875 ? OD1 ? A ASN 122 OD1 7 1 Y 1 A ASN 875 ? ND2 ? A ASN 122 ND2 8 1 Y 1 A ASP 876 ? CG ? A ASP 123 CG 9 1 Y 1 A ASP 876 ? OD1 ? A ASP 123 OD1 10 1 Y 1 A ASP 876 ? OD2 ? A ASP 123 OD2 11 1 Y 1 A SER 878 ? OG ? A SER 125 OG 12 1 Y 1 A LYS 906 ? CG ? A LYS 153 CG 13 1 Y 1 A LYS 906 ? CD ? A LYS 153 CD 14 1 Y 1 A LYS 906 ? CE ? A LYS 153 CE 15 1 Y 1 A LYS 906 ? NZ ? A LYS 153 NZ 16 1 Y 1 A ASP 979 ? CB ? A ASP 226 CB 17 1 Y 1 A ASP 979 ? CG ? A ASP 226 CG 18 1 Y 1 A ASP 979 ? OD1 ? A ASP 226 OD1 19 1 Y 1 A ASP 979 ? OD2 ? A ASP 226 OD2 20 1 Y 1 A SER 985 ? OG ? A SER 232 OG 21 1 Y 1 A ARG 993 ? CG ? A ARG 240 CG 22 1 Y 1 A ARG 993 ? CD ? A ARG 240 CD 23 1 Y 1 A ARG 993 ? NE ? A ARG 240 NE 24 1 Y 1 A ARG 993 ? CZ ? A ARG 240 CZ 25 1 Y 1 A ARG 993 ? NH1 ? A ARG 240 NH1 26 1 Y 1 A ARG 993 ? NH2 ? A ARG 240 NH2 27 1 Y 1 A ARG 1010 ? CG ? A ARG 257 CG 28 1 Y 1 A ARG 1010 ? CD ? A ARG 257 CD 29 1 Y 1 A ARG 1010 ? NE ? A ARG 257 NE 30 1 Y 1 A ARG 1010 ? CZ ? A ARG 257 CZ 31 1 Y 1 A ARG 1010 ? NH1 ? A ARG 257 NH1 32 1 Y 1 A ARG 1010 ? NH2 ? A ARG 257 NH2 33 1 Y 1 A LYS 1011 ? CG ? A LYS 258 CG 34 1 Y 1 A LYS 1011 ? CD ? A LYS 258 CD 35 1 Y 1 A LYS 1011 ? CE ? A LYS 258 CE 36 1 Y 1 A LYS 1011 ? NZ ? A LYS 258 NZ 37 1 Y 1 A LYS 1013 ? CG ? A LYS 260 CG 38 1 Y 1 A LYS 1013 ? CD ? A LYS 260 CD 39 1 Y 1 A LYS 1013 ? CE ? A LYS 260 CE 40 1 Y 1 A LYS 1013 ? NZ ? A LYS 260 NZ 41 1 Y 1 A GLU 1015 ? CG ? A GLU 262 CG 42 1 Y 1 A GLU 1015 ? CD ? A GLU 262 CD 43 1 Y 1 A GLU 1015 ? OE1 ? A GLU 262 OE1 44 1 Y 1 A GLU 1015 ? OE2 ? A GLU 262 OE2 45 1 Y 1 B A 1 ? "O5'" ? B A 1 "O5'" 46 1 Y 1 B A 1 ? "C5'" ? B A 1 "C5'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 754 ? A SER 1 2 1 Y 1 A ASP 755 ? A ASP 2 3 1 Y 1 A LYS 852 ? A LYS 99 4 1 Y 1 A PRO 853 ? A PRO 100 5 1 Y 1 A ALA 854 ? A ALA 101 6 1 Y 1 A LEU 855 ? A LEU 102 7 1 Y 1 A GLU 856 ? A GLU 103 8 1 Y 1 A PHE 857 ? A PHE 104 9 1 Y 1 A LYS 858 ? A LYS 105 10 1 Y 1 A PRO 859 ? A PRO 106 11 1 Y 1 A THR 860 ? A THR 107 12 1 Y 1 A ASP 861 ? A ASP 108 13 1 Y 1 A ALA 862 ? A ALA 109 14 1 Y 1 A ASP 863 ? A ASP 110 15 1 Y 1 A SER 864 ? A SER 111 16 1 Y 1 A ALA 865 ? A ALA 112 17 1 Y 1 A SER 877 ? A SER 124 18 1 Y 1 A HIS 994 ? A HIS 241 19 1 Y 1 A LEU 995 ? A LEU 242 20 1 Y 1 A ASN 996 ? A ASN 243 21 1 Y 1 A GLN 997 ? A GLN 244 22 1 Y 1 A LYS 998 ? A LYS 245 23 1 Y 1 A GLY 999 ? A GLY 246 24 1 Y 1 A LYS 1000 ? A LYS 247 25 1 Y 1 A ALA 1001 ? A ALA 248 26 1 Y 1 A LEU 1002 ? A LEU 249 27 1 Y 1 A PRO 1003 ? A PRO 250 28 1 Y 1 A LEU 1004 ? A LEU 251 29 1 Y 1 A SER 1005 ? A SER 252 30 1 Y 1 A SER 1006 ? A SER 253 31 1 Y 1 A ALA 1007 ? A ALA 254 32 1 Y 1 A GLU 1008 ? A GLU 255 33 1 Y 1 A LYS 1009 ? A LYS 256 34 1 Y 1 A LEU 1054 ? A LEU 301 35 1 Y 1 A LEU 1055 ? A LEU 302 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 HOH O O N N 268 HOH H1 H N N 269 HOH H2 H N N 270 ILE N N N N 271 ILE CA C N S 272 ILE C C N N 273 ILE O O N N 274 ILE CB C N S 275 ILE CG1 C N N 276 ILE CG2 C N N 277 ILE CD1 C N N 278 ILE OXT O N N 279 ILE H H N N 280 ILE H2 H N N 281 ILE HA H N N 282 ILE HB H N N 283 ILE HG12 H N N 284 ILE HG13 H N N 285 ILE HG21 H N N 286 ILE HG22 H N N 287 ILE HG23 H N N 288 ILE HD11 H N N 289 ILE HD12 H N N 290 ILE HD13 H N N 291 ILE HXT H N N 292 LEU N N N N 293 LEU CA C N S 294 LEU C C N N 295 LEU O O N N 296 LEU CB C N N 297 LEU CG C N N 298 LEU CD1 C N N 299 LEU CD2 C N N 300 LEU OXT O N N 301 LEU H H N N 302 LEU H2 H N N 303 LEU HA H N N 304 LEU HB2 H N N 305 LEU HB3 H N N 306 LEU HG H N N 307 LEU HD11 H N N 308 LEU HD12 H N N 309 LEU HD13 H N N 310 LEU HD21 H N N 311 LEU HD22 H N N 312 LEU HD23 H N N 313 LEU HXT H N N 314 LYS N N N N 315 LYS CA C N S 316 LYS C C N N 317 LYS O O N N 318 LYS CB C N N 319 LYS CG C N N 320 LYS CD C N N 321 LYS CE C N N 322 LYS NZ N N N 323 LYS OXT O N N 324 LYS H H N N 325 LYS H2 H N N 326 LYS HA H N N 327 LYS HB2 H N N 328 LYS HB3 H N N 329 LYS HG2 H N N 330 LYS HG3 H N N 331 LYS HD2 H N N 332 LYS HD3 H N N 333 LYS HE2 H N N 334 LYS HE3 H N N 335 LYS HZ1 H N N 336 LYS HZ2 H N N 337 LYS HZ3 H N N 338 LYS HXT H N N 339 MET N N N N 340 MET CA C N S 341 MET C C N N 342 MET O O N N 343 MET CB C N N 344 MET CG C N N 345 MET SD S N N 346 MET CE C N N 347 MET OXT O N N 348 MET H H N N 349 MET H2 H N N 350 MET HA H N N 351 MET HB2 H N N 352 MET HB3 H N N 353 MET HG2 H N N 354 MET HG3 H N N 355 MET HE1 H N N 356 MET HE2 H N N 357 MET HE3 H N N 358 MET HXT H N N 359 PHE N N N N 360 PHE CA C N S 361 PHE C C N N 362 PHE O O N N 363 PHE CB C N N 364 PHE CG C Y N 365 PHE CD1 C Y N 366 PHE CD2 C Y N 367 PHE CE1 C Y N 368 PHE CE2 C Y N 369 PHE CZ C Y N 370 PHE OXT O N N 371 PHE H H N N 372 PHE H2 H N N 373 PHE HA H N N 374 PHE HB2 H N N 375 PHE HB3 H N N 376 PHE HD1 H N N 377 PHE HD2 H N N 378 PHE HE1 H N N 379 PHE HE2 H N N 380 PHE HZ H N N 381 PHE HXT H N N 382 PO4 P P N N 383 PO4 O1 O N N 384 PO4 O2 O N N 385 PO4 O3 O N N 386 PO4 O4 O N N 387 PRO N N N N 388 PRO CA C N S 389 PRO C C N N 390 PRO O O N N 391 PRO CB C N N 392 PRO CG C N N 393 PRO CD C N N 394 PRO OXT O N N 395 PRO H H N N 396 PRO HA H N N 397 PRO HB2 H N N 398 PRO HB3 H N N 399 PRO HG2 H N N 400 PRO HG3 H N N 401 PRO HD2 H N N 402 PRO HD3 H N N 403 PRO HXT H N N 404 SER N N N N 405 SER CA C N S 406 SER C C N N 407 SER O O N N 408 SER CB C N N 409 SER OG O N N 410 SER OXT O N N 411 SER H H N N 412 SER H2 H N N 413 SER HA H N N 414 SER HB2 H N N 415 SER HB3 H N N 416 SER HG H N N 417 SER HXT H N N 418 THR N N N N 419 THR CA C N S 420 THR C C N N 421 THR O O N N 422 THR CB C N R 423 THR OG1 O N N 424 THR CG2 C N N 425 THR OXT O N N 426 THR H H N N 427 THR H2 H N N 428 THR HA H N N 429 THR HB H N N 430 THR HG1 H N N 431 THR HG21 H N N 432 THR HG22 H N N 433 THR HG23 H N N 434 THR HXT H N N 435 TRP N N N N 436 TRP CA C N S 437 TRP C C N N 438 TRP O O N N 439 TRP CB C N N 440 TRP CG C Y N 441 TRP CD1 C Y N 442 TRP CD2 C Y N 443 TRP NE1 N Y N 444 TRP CE2 C Y N 445 TRP CE3 C Y N 446 TRP CZ2 C Y N 447 TRP CZ3 C Y N 448 TRP CH2 C Y N 449 TRP OXT O N N 450 TRP H H N N 451 TRP H2 H N N 452 TRP HA H N N 453 TRP HB2 H N N 454 TRP HB3 H N N 455 TRP HD1 H N N 456 TRP HE1 H N N 457 TRP HE3 H N N 458 TRP HZ2 H N N 459 TRP HZ3 H N N 460 TRP HH2 H N N 461 TRP HXT H N N 462 TYR N N N N 463 TYR CA C N S 464 TYR C C N N 465 TYR O O N N 466 TYR CB C N N 467 TYR CG C Y N 468 TYR CD1 C Y N 469 TYR CD2 C Y N 470 TYR CE1 C Y N 471 TYR CE2 C Y N 472 TYR CZ C Y N 473 TYR OH O N N 474 TYR OXT O N N 475 TYR H H N N 476 TYR H2 H N N 477 TYR HA H N N 478 TYR HB2 H N N 479 TYR HB3 H N N 480 TYR HD1 H N N 481 TYR HD2 H N N 482 TYR HE1 H N N 483 TYR HE2 H N N 484 TYR HH H N N 485 TYR HXT H N N 486 U OP3 O N N 487 U P P N N 488 U OP1 O N N 489 U OP2 O N N 490 U "O5'" O N N 491 U "C5'" C N N 492 U "C4'" C N R 493 U "O4'" O N N 494 U "C3'" C N S 495 U "O3'" O N N 496 U "C2'" C N R 497 U "O2'" O N N 498 U "C1'" C N R 499 U N1 N N N 500 U C2 C N N 501 U O2 O N N 502 U N3 N N N 503 U C4 C N N 504 U O4 O N N 505 U C5 C N N 506 U C6 C N N 507 U HOP3 H N N 508 U HOP2 H N N 509 U "H5'" H N N 510 U "H5''" H N N 511 U "H4'" H N N 512 U "H3'" H N N 513 U "HO3'" H N N 514 U "H2'" H N N 515 U "HO2'" H N N 516 U "H1'" H N N 517 U H3 H N N 518 U H5 H N N 519 U H6 H N N 520 VAL N N N N 521 VAL CA C N S 522 VAL C C N N 523 VAL O O N N 524 VAL CB C N N 525 VAL CG1 C N N 526 VAL CG2 C N N 527 VAL OXT O N N 528 VAL H H N N 529 VAL H2 H N N 530 VAL HA H N N 531 VAL HB H N N 532 VAL HG11 H N N 533 VAL HG12 H N N 534 VAL HG13 H N N 535 VAL HG21 H N N 536 VAL HG22 H N N 537 VAL HG23 H N N 538 VAL HXT H N N 539 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 PO4 P O1 doub N N 375 PO4 P O2 sing N N 376 PO4 P O3 sing N N 377 PO4 P O4 sing N N 378 PRO N CA sing N N 379 PRO N CD sing N N 380 PRO N H sing N N 381 PRO CA C sing N N 382 PRO CA CB sing N N 383 PRO CA HA sing N N 384 PRO C O doub N N 385 PRO C OXT sing N N 386 PRO CB CG sing N N 387 PRO CB HB2 sing N N 388 PRO CB HB3 sing N N 389 PRO CG CD sing N N 390 PRO CG HG2 sing N N 391 PRO CG HG3 sing N N 392 PRO CD HD2 sing N N 393 PRO CD HD3 sing N N 394 PRO OXT HXT sing N N 395 SER N CA sing N N 396 SER N H sing N N 397 SER N H2 sing N N 398 SER CA C sing N N 399 SER CA CB sing N N 400 SER CA HA sing N N 401 SER C O doub N N 402 SER C OXT sing N N 403 SER CB OG sing N N 404 SER CB HB2 sing N N 405 SER CB HB3 sing N N 406 SER OG HG sing N N 407 SER OXT HXT sing N N 408 THR N CA sing N N 409 THR N H sing N N 410 THR N H2 sing N N 411 THR CA C sing N N 412 THR CA CB sing N N 413 THR CA HA sing N N 414 THR C O doub N N 415 THR C OXT sing N N 416 THR CB OG1 sing N N 417 THR CB CG2 sing N N 418 THR CB HB sing N N 419 THR OG1 HG1 sing N N 420 THR CG2 HG21 sing N N 421 THR CG2 HG22 sing N N 422 THR CG2 HG23 sing N N 423 THR OXT HXT sing N N 424 TRP N CA sing N N 425 TRP N H sing N N 426 TRP N H2 sing N N 427 TRP CA C sing N N 428 TRP CA CB sing N N 429 TRP CA HA sing N N 430 TRP C O doub N N 431 TRP C OXT sing N N 432 TRP CB CG sing N N 433 TRP CB HB2 sing N N 434 TRP CB HB3 sing N N 435 TRP CG CD1 doub Y N 436 TRP CG CD2 sing Y N 437 TRP CD1 NE1 sing Y N 438 TRP CD1 HD1 sing N N 439 TRP CD2 CE2 doub Y N 440 TRP CD2 CE3 sing Y N 441 TRP NE1 CE2 sing Y N 442 TRP NE1 HE1 sing N N 443 TRP CE2 CZ2 sing Y N 444 TRP CE3 CZ3 doub Y N 445 TRP CE3 HE3 sing N N 446 TRP CZ2 CH2 doub Y N 447 TRP CZ2 HZ2 sing N N 448 TRP CZ3 CH2 sing Y N 449 TRP CZ3 HZ3 sing N N 450 TRP CH2 HH2 sing N N 451 TRP OXT HXT sing N N 452 TYR N CA sing N N 453 TYR N H sing N N 454 TYR N H2 sing N N 455 TYR CA C sing N N 456 TYR CA CB sing N N 457 TYR CA HA sing N N 458 TYR C O doub N N 459 TYR C OXT sing N N 460 TYR CB CG sing N N 461 TYR CB HB2 sing N N 462 TYR CB HB3 sing N N 463 TYR CG CD1 doub Y N 464 TYR CG CD2 sing Y N 465 TYR CD1 CE1 sing Y N 466 TYR CD1 HD1 sing N N 467 TYR CD2 CE2 doub Y N 468 TYR CD2 HD2 sing N N 469 TYR CE1 CZ doub Y N 470 TYR CE1 HE1 sing N N 471 TYR CE2 CZ sing Y N 472 TYR CE2 HE2 sing N N 473 TYR CZ OH sing N N 474 TYR OH HH sing N N 475 TYR OXT HXT sing N N 476 U OP3 P sing N N 477 U OP3 HOP3 sing N N 478 U P OP1 doub N N 479 U P OP2 sing N N 480 U P "O5'" sing N N 481 U OP2 HOP2 sing N N 482 U "O5'" "C5'" sing N N 483 U "C5'" "C4'" sing N N 484 U "C5'" "H5'" sing N N 485 U "C5'" "H5''" sing N N 486 U "C4'" "O4'" sing N N 487 U "C4'" "C3'" sing N N 488 U "C4'" "H4'" sing N N 489 U "O4'" "C1'" sing N N 490 U "C3'" "O3'" sing N N 491 U "C3'" "C2'" sing N N 492 U "C3'" "H3'" sing N N 493 U "O3'" "HO3'" sing N N 494 U "C2'" "O2'" sing N N 495 U "C2'" "C1'" sing N N 496 U "C2'" "H2'" sing N N 497 U "O2'" "HO2'" sing N N 498 U "C1'" N1 sing N N 499 U "C1'" "H1'" sing N N 500 U N1 C2 sing N N 501 U N1 C6 sing N N 502 U C2 O2 doub N N 503 U C2 N3 sing N N 504 U N3 C4 sing N N 505 U N3 H3 sing N N 506 U C4 O4 doub N N 507 U C4 C5 sing N N 508 U C5 C6 doub N N 509 U C5 H5 sing N N 510 U C6 H6 sing N N 511 VAL N CA sing N N 512 VAL N H sing N N 513 VAL N H2 sing N N 514 VAL CA C sing N N 515 VAL CA CB sing N N 516 VAL CA HA sing N N 517 VAL C O doub N N 518 VAL C OXT sing N N 519 VAL CB CG1 sing N N 520 VAL CB CG2 sing N N 521 VAL CB HB sing N N 522 VAL CG1 HG11 sing N N 523 VAL CG1 HG12 sing N N 524 VAL CG1 HG13 sing N N 525 VAL CG2 HG21 sing N N 526 VAL CG2 HG22 sing N N 527 VAL CG2 HG23 sing N N 528 VAL OXT HXT sing N N 529 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4NGG 'double helix' 4NGG 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B A 1 1_555 B U 12 4_565 1.098 2.074 -0.319 -23.327 23.619 -55.481 1 B_A1:U12_B B 1 ? B 12 ? ? ? 1 B G 2 1_555 B C 11 4_565 -0.264 0.082 0.672 13.931 -10.959 -0.079 2 B_G2:C11_B B 2 ? B 11 ? 19 1 1 B C 3 1_555 B G 10 4_565 -0.560 0.207 -0.248 14.980 -20.454 -1.550 3 B_C3:G10_B B 3 ? B 10 ? 19 1 1 B G 4 1_555 B C 9 4_565 -0.904 -0.165 -0.085 -3.355 -16.207 -2.798 4 B_G4:C9_B B 4 ? B 9 ? 19 1 1 B A 5 1_555 B U 8 4_565 0.922 0.086 0.029 0.862 -16.090 1.619 5 B_A5:U8_B B 5 ? B 8 ? 20 1 1 B A 6 1_555 B U 7 4_565 0.018 -0.259 -0.043 1.052 -21.759 -6.192 6 B_A6:U7_B B 6 ? B 7 ? 20 1 1 B U 7 1_555 B A 6 4_565 -0.018 -0.259 -0.043 -1.052 -21.759 -6.192 7 B_U7:A6_B B 7 ? B 6 ? 20 1 1 B U 8 1_555 B A 5 4_565 -0.922 0.086 0.029 -0.862 -16.090 1.619 8 B_U8:A5_B B 8 ? B 5 ? 20 1 1 B C 9 1_555 B G 4 4_565 0.904 -0.165 -0.085 3.355 -16.207 -2.798 9 B_C9:G4_B B 9 ? B 4 ? 19 1 1 B G 10 1_555 B C 3 4_565 0.560 0.207 -0.248 -14.980 -20.454 -1.550 10 B_G10:C3_B B 10 ? B 3 ? 19 1 1 B C 11 1_555 B G 2 4_565 0.264 0.082 0.672 -13.931 -10.959 -0.079 11 B_C11:G2_B B 11 ? B 2 ? 19 1 1 B U 12 1_555 B A 1 4_565 -1.098 2.074 -0.319 23.327 23.619 -55.481 12 B_U12:A1_B B 12 ? B 1 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B A 1 1_555 B U 12 4_565 B G 2 1_555 B C 11 4_565 2.317 -0.968 2.740 -11.959 9.536 25.430 -3.183 -6.152 1.133 19.568 24.540 29.611 1 BB_A1G2:C11U12_BB B 1 ? B 12 ? B 2 ? B 11 ? 1 B G 2 1_555 B C 11 4_565 B C 3 1_555 B G 10 4_565 0.292 -1.396 3.217 3.834 10.925 31.134 -4.136 0.082 2.610 19.528 -6.854 33.168 2 BB_G2C3:G10C11_BB B 2 ? B 11 ? B 3 ? B 10 ? 1 B C 3 1_555 B G 10 4_565 B G 4 1_555 B C 9 4_565 0.590 -1.943 3.686 -1.045 12.192 30.127 -5.645 -1.242 2.696 22.333 1.914 32.464 3 BB_C3G4:C9G10_BB B 3 ? B 10 ? B 4 ? B 9 ? 1 B G 4 1_555 B C 9 4_565 B A 5 1_555 B U 8 4_565 -0.009 -1.765 3.212 0.955 2.988 37.148 -3.142 0.136 3.065 4.680 -1.496 37.275 4 BB_G4A5:U8C9_BB B 4 ? B 9 ? B 5 ? B 8 ? 1 B A 5 1_555 B U 8 4_565 B A 6 1_555 B U 7 4_565 -0.297 -1.597 3.239 1.101 7.006 26.074 -5.071 0.895 2.710 15.174 -2.384 27.005 5 BB_A5A6:U7U8_BB B 5 ? B 8 ? B 6 ? B 7 ? 1 B A 6 1_555 B U 7 4_565 B U 7 1_555 B A 6 4_565 0.000 -1.710 3.297 0.000 3.214 35.488 -3.255 0.000 3.135 5.260 0.000 35.628 6 BB_A6U7:A6U7_BB B 6 ? B 7 ? B 7 ? B 6 ? 1 B U 7 1_555 B A 6 4_565 B U 8 1_555 B A 5 4_565 0.297 -1.597 3.239 -1.101 7.006 26.074 -5.071 -0.895 2.710 15.174 2.384 27.005 7 BB_U7U8:A5A6_BB B 7 ? B 6 ? B 8 ? B 5 ? 1 B U 8 1_555 B A 5 4_565 B C 9 1_555 B G 4 4_565 0.009 -1.765 3.212 -0.955 2.988 37.148 -3.142 -0.136 3.065 4.680 1.496 37.275 8 BB_U8C9:G4A5_BB B 8 ? B 5 ? B 9 ? B 4 ? 1 B C 9 1_555 B G 4 4_565 B G 10 1_555 B C 3 4_565 -0.590 -1.943 3.686 1.045 12.192 30.127 -5.645 1.242 2.696 22.333 -1.914 32.464 9 BB_C9G10:C3G4_BB B 9 ? B 4 ? B 10 ? B 3 ? 1 B G 10 1_555 B C 3 4_565 B C 11 1_555 B G 2 4_565 -0.292 -1.396 3.217 -3.834 10.925 31.134 -4.136 -0.082 2.610 19.528 6.854 33.168 10 BB_G10C11:G2C3_BB B 10 ? B 3 ? B 11 ? B 2 ? 1 B C 11 1_555 B G 2 4_565 B U 12 1_555 B A 1 4_565 -2.317 -0.968 2.740 11.959 9.536 25.430 -3.183 6.152 1.133 19.568 -24.540 29.611 11 BB_C11U12:A1G2_BB B 11 ? B 2 ? B 12 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'PHOSPHATE ION' PO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4NGD _pdbx_initial_refinement_model.details 'PDB ENTRY 4NGD' #