HEADER HYDROLASE 03-NOV-13 4NGZ TITLE PREVIOUSLY DE-IONIZED HEW LYSOZYME CRYSTALLIZED IN 0.5 M YBCL3/30% TITLE 2 (V/V) GLYCEROL AND COLLECTED AT 125K COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS HOFMEISTER SERIES, PROTEIN CATION INTERACTIONS, HEW LYSOZYME, ESI- KEYWDS 2 MASS SPECTROMETRY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BENAS,L.LEGRAND,M.RIES-KAUTT REVDAT 5 20-SEP-23 4NGZ 1 REMARK SSBOND LINK REVDAT 4 17-JUL-19 4NGZ 1 REMARK REVDAT 3 15-NOV-17 4NGZ 1 REMARK REVDAT 2 13-AUG-14 4NGZ 1 JRNL REVDAT 1 28-MAY-14 4NGZ 0 JRNL AUTH P.BENAS,N.AUZEIL,L.LEGRAND,F.BRACHET,A.REGAZZETTI, JRNL AUTH 2 M.RIES-KAUTT JRNL TITL WEAK PROTEIN-CATIONIC CO-ION INTERACTIONS ADDRESSED BY X-RAY JRNL TITL 2 CRYSTALLOGRAPHY AND MASS SPECTROMETRY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2217 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25084340 JRNL DOI 10.1107/S1399004714011304 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.BENAS,L.LEGRAND,M.RIES-KAUTT REMARK 1 TITL STRONG AND SPECIFIC EFFECTS OF CATIONS ON LYSOZYME CHLORIDE REMARK 1 TITL 2 SOLUBILITY. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 1582 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12351866 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 11957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1241 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 849 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1075 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 970 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1430 ; 1.296 ; 1.907 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2207 ; 0.861 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 132 ; 5.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;36.818 ;22.885 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 172 ;13.763 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.710 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 148 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1249 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 281 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 528 ; 1.374 ; 1.302 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 526 ; 1.318 ; 1.292 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 660 ; 1.907 ; 1.940 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 546 ; 3.380 ; 1.637 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9690 58.3630 0.6620 REMARK 3 T TENSOR REMARK 3 T11: 0.0238 T22: 0.0308 REMARK 3 T33: 0.0188 T12: 0.0032 REMARK 3 T13: 0.0068 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.3921 L22: 1.6645 REMARK 3 L33: 0.9653 L12: -0.8730 REMARK 3 L13: 0.1722 L23: 0.2733 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: 0.0133 S13: 0.0697 REMARK 3 S21: 0.0503 S22: 0.0566 S23: -0.1463 REMARK 3 S31: -0.0201 S32: 0.0706 S33: -0.0296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.50 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 125 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000, TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13242 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 19.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.20200 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 193L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PREVIOUSLY DE-IONIZED LYSOZYME, NO REMARK 280 BUFFER ADDED, 0.5 M YBCL3, 30% (V/V) GLYCEROL , PH 4.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.50850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.29450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.29450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.76275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.29450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.29450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.25425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.29450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.29450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.76275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.29450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.29450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.25425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.50850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 YB YB A 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 379 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 380 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 312 O HOH A 381 1.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 201 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 46 OD1 REMARK 620 2 ASP A 52 OD2 74.0 REMARK 620 3 HOH A 301 O 59.6 100.4 REMARK 620 4 HOH A 302 O 122.2 81.3 75.3 REMARK 620 5 HOH A 303 O 40.0 90.0 91.2 162.2 REMARK 620 6 HOH A 304 O 118.7 160.2 76.4 79.0 109.5 REMARK 620 7 HOH A 305 O 65.9 137.7 71.0 131.7 50.2 60.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 203 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 101 OD2 REMARK 620 2 ASP A 101 OD1 51.0 REMARK 620 3 HOH A 308 O 102.1 54.5 REMARK 620 4 HOH A 309 O 149.6 149.4 95.5 REMARK 620 5 HOH A 310 O 75.1 124.7 147.6 76.7 REMARK 620 6 HOH A 311 O 78.3 81.5 72.0 83.9 75.9 REMARK 620 7 HOH A 312 O 100.1 67.4 68.3 109.4 144.1 138.9 REMARK 620 8 HOH A 381 O 112.3 102.0 101.2 88.0 109.8 168.7 38.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 202 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 129 OXT REMARK 620 2 LEU A 129 O 45.8 REMARK 620 3 LEU A 129 OXT 36.6 9.9 REMARK 620 4 LEU A 129 O 37.1 46.2 44.1 REMARK 620 5 HOH A 306 O 86.7 94.0 89.2 123.3 REMARK 620 6 HOH A 307 O 88.7 133.0 123.0 107.4 67.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NEB RELATED DB: PDB REMARK 900 HEW LYSOZYME IN 0.5 M MNCL2 COLLECTED AT ROOM TEMPERATURE REMARK 900 RELATED ID: 4NFV RELATED DB: PDB REMARK 900 HEW LYSOZYME IN 1.1 M MNCL2 COLLECTED AT ROOM TEMPERATURE REMARK 900 RELATED ID: 4NG1 RELATED DB: PDB REMARK 900 HEW LYSOZYME IN 1.9 M CSCL COLLECTED AT ROOM TEMPERATURE REMARK 900 RELATED ID: 4NG8 RELATED DB: PDB REMARK 900 HEW LYSOZYME IN 1.9 M CSCL COLLECTED AT 100K REMARK 900 RELATED ID: 4NGI RELATED DB: PDB REMARK 900 HEW LYSOZYME IN 1.0 M RBCL/30% (V/V)GLYCEROL AND COLLECTED AT 125K REMARK 900 RELATED ID: 4NGJ RELATED DB: PDB REMARK 900 HEW LYSOZYME IN 1.0 M RBCL COLLECTED AT 100K REMARK 900 RELATED ID: 4NGK RELATED DB: PDB REMARK 900 HEW LYSOZYME IN 0.2 M COCL2 COLLECTED AT ROOM TEMPERATURE REMARK 900 RELATED ID: 4NGL RELATED DB: PDB REMARK 900 HEW LYSOZYME IN 0.6 M COCL2 COLLECTED AT ROOM TEMPERATURE REMARK 900 RELATED ID: 4NGO RELATED DB: PDB REMARK 900 HEW LYSOZYME IN 1.0 M COCL2 COLLECTED AT ROOM TEMPERATURE REMARK 900 RELATED ID: 4NGV RELATED DB: PDB REMARK 900 HEW LYSOZYME IN 0.5 M YBCL3 COLLECTED AT ROOM TEMPERATURE REMARK 900 RELATED ID: 4NGW RELATED DB: PDB REMARK 900 HEW LYSOZYME IN 0.5 M YBCL3 COLLECTED AT 100K REMARK 900 RELATED ID: 4NGY RELATED DB: PDB REMARK 900 HEW LYSOZYME IN 0.75 M YBCL3 COLLECTED AT 100K DBREF 4NGZ A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET YB A 201 1 HET YB A 202 1 HET YB A 203 1 HET CL A 204 1 HET CL A 205 1 HET CL A 206 1 HETNAM YB YTTERBIUM (III) ION HETNAM CL CHLORIDE ION FORMUL 2 YB 3(YB 3+) FORMUL 5 CL 3(CL 1-) FORMUL 8 HOH *129(H2 O) HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 ASN A 19 TYR A 23 5 5 HELIX 3 3 SER A 24 ASN A 37 1 14 HELIX 4 4 PRO A 79 SER A 85 5 7 HELIX 5 5 ILE A 88 SER A 100 1 13 HELIX 6 6 ASN A 103 ALA A 107 5 5 HELIX 7 7 TRP A 108 CYS A 115 1 8 HELIX 8 8 ASP A 119 ARG A 125 5 7 SHEET 1 A 3 THR A 43 ARG A 45 0 SHEET 2 A 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 A 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.02 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.04 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03 LINK OD1 ASN A 46 YB YB A 201 1555 1555 3.27 LINK OD2 ASP A 52 YB YB A 201 1555 1555 2.15 LINK OD2 ASP A 101 YB YB A 203 1555 1555 2.17 LINK OD1 ASP A 101 YB YB A 203 1555 1555 2.74 LINK OXTALEU A 129 YB YB A 202 1555 1555 2.28 LINK O ALEU A 129 YB YB A 202 1555 1555 2.97 LINK OXTBLEU A 129 YB YB A 202 1555 1555 2.30 LINK O BLEU A 129 YB YB A 202 1555 1555 2.99 LINK YB YB A 201 O HOH A 301 1555 1555 2.19 LINK YB YB A 201 O HOH A 302 1555 1555 2.28 LINK YB YB A 201 O HOH A 303 1555 1555 2.07 LINK YB YB A 201 O HOH A 304 1555 1555 2.20 LINK YB YB A 201 O HOH A 305 1555 1555 2.23 LINK YB YB A 202 O HOH A 306 1555 1555 2.21 LINK YB YB A 202 O HOH A 307 1555 1555 2.22 LINK YB YB A 203 O HOH A 308 1555 1555 2.16 LINK YB YB A 203 O HOH A 309 1555 1555 2.20 LINK YB YB A 203 O HOH A 310 1555 1555 2.19 LINK YB YB A 203 O HOH A 311 1555 1555 2.22 LINK YB YB A 203 O HOH A 312 1555 1555 2.21 LINK YB YB A 203 O HOH A 381 1555 1555 2.22 SITE 1 AC1 7 ASN A 46 ASP A 52 HOH A 301 HOH A 302 SITE 2 AC1 7 HOH A 303 HOH A 304 HOH A 305 SITE 1 AC2 3 LEU A 129 HOH A 306 HOH A 307 SITE 1 AC3 7 ASP A 101 HOH A 308 HOH A 309 HOH A 310 SITE 2 AC3 7 HOH A 311 HOH A 312 HOH A 381 SITE 1 AC4 2 TYR A 23 ASN A 113 SITE 1 AC5 3 SER A 24 GLY A 26 GLN A 121 CRYST1 78.589 78.589 37.017 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012724 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027015 0.00000