HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 05-NOV-13 4NHL TITLE CRYSTAL STRUCTURE OF TPA1P FROM SACCHAROMYCES CEREVISIAE, TERMINATION TITLE 2 AND POLYADENYLATION PROTEIN 1, IN COMPLEX WITH N-OXALYLGLYCINE (NOG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PKHD-TYPE HYDROXYLASE TPA1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TERMINATION AND POLYADENYLATION PROTEIN 1; COMPND 5 EC: 1.14.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: TPA1, YER049W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC28 KEYWDS 2-OXOGLUTARATE OXYGENASE, OXYGEN SENSING, PROTEIN SYNTHESIS KEYWDS 2 REGULATION, DOUBLE-STRANDED BETA HELIX, JELLYROLL FOLD, PROLYL KEYWDS 3 HYDROXYLASE, TRANSLATION, RIBOSOME, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 4 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.S.SCOTTI,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 5 20-SEP-23 4NHL 1 REMARK SEQADV LINK REVDAT 4 22-NOV-17 4NHL 1 REMARK REVDAT 3 29-APR-15 4NHL 1 JRNL REVDAT 2 18-MAR-15 4NHL 1 JRNL REVDAT 1 19-NOV-14 4NHL 0 JRNL AUTH S.HORITA,J.S.SCOTTI,C.THINNES,Y.S.MOTTAGHI-TAROMSARI, JRNL AUTH 2 A.THALHAMMER,W.GE,W.AIK,C.LOENARZ,C.J.SCHOFIELD, JRNL AUTH 3 M.A.MCDONOUGH JRNL TITL STRUCTURE OF THE RIBOSOMAL OXYGENASE OGFOD1 PROVIDES JRNL TITL 2 INSIGHTS INTO THE REGIO- AND STEREOSELECTIVITY OF PROLYL JRNL TITL 3 HYDROXYLASES. JRNL REF STRUCTURE V. 23 639 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25728928 JRNL DOI 10.1016/J.STR.2015.01.014 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 18325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.9000 - 2.8300 0.89 0 125 0.2672 0.3478 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 NULL REMARK 3 ANGLE : 1.282 NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18332 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.840 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.17800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: PDB ENTRY 3KT7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 MM MNCL2, 1.1 MM OGA, 0.1 M REMARK 280 SUCCINIC ACID, 12% PEG 3350, VAPOR DIFFUSION SITTING DROP, REMARK 280 TEMPERATURE 293K, PH 7.0, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 84.10800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.62550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 84.10800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.62550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 842 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 VAL A 8 REMARK 465 ASP A 9 REMARK 465 LEU A 10 REMARK 465 GLY A 11 REMARK 465 THR A 12 REMARK 465 GLU A 13 REMARK 465 ASN A 14 REMARK 465 LEU A 15 REMARK 465 TYR A 16 REMARK 465 PHE A 17 REMARK 465 GLN A 18 REMARK 465 SER A 19 REMARK 465 MET A 20 REMARK 465 LEU A 21 REMARK 465 GLU A 22 REMARK 465 GLU A 260 REMARK 465 GLU A 261 REMARK 465 ALA A 262 REMARK 465 TRP A 263 REMARK 465 VAL A 264 REMARK 465 ARG A 265 REMARK 465 ASN A 266 REMARK 465 ASN A 267 REMARK 465 THR A 268 REMARK 465 SER A 269 REMARK 465 THR A 270 REMARK 465 LEU A 271 REMARK 465 ALA A 272 REMARK 465 GLN A 273 REMARK 465 ILE A 274 REMARK 465 GLU A 275 REMARK 465 SER A 276 REMARK 465 ASN A 277 REMARK 465 VAL A 278 REMARK 465 GLY A 306 REMARK 465 ASP A 307 REMARK 465 ALA A 308 REMARK 465 GLY A 309 REMARK 465 ALA A 310 REMARK 465 LYS A 311 REMARK 465 THR A 312 REMARK 465 ASP A 313 REMARK 465 ASN A 314 REMARK 465 THR A 315 REMARK 465 PRO A 316 REMARK 465 LYS A 317 REMARK 465 GLU A 318 REMARK 465 SER A 319 REMARK 465 MET A 320 REMARK 465 THR A 321 REMARK 465 SER A 322 REMARK 465 VAL A 323 REMARK 465 ILE A 324 REMARK 465 SER A 325 REMARK 465 ASP A 326 REMARK 465 SER A 327 REMARK 465 ASP A 561 REMARK 465 ASP A 562 REMARK 465 GLU A 563 REMARK 465 ASP A 564 REMARK 465 ASN A 565 REMARK 465 LYS A 566 REMARK 465 GLN A 567 REMARK 465 TYR A 568 REMARK 465 LEU A 569 REMARK 465 LYS A 570 REMARK 465 GLU A 571 REMARK 465 ASP A 572 REMARK 465 VAL A 573 REMARK 465 GLU A 574 REMARK 465 ASP A 575 REMARK 465 ALA A 576 REMARK 465 SER A 577 REMARK 465 VAL A 578 REMARK 465 TYR A 579 REMARK 465 ARG A 580 REMARK 465 ALA A 581 REMARK 465 ASP A 582 REMARK 465 ASP A 583 REMARK 465 SER A 584 REMARK 465 GLY A 585 REMARK 465 ASP A 586 REMARK 465 ASP A 636 REMARK 465 GLU A 637 REMARK 465 ASP A 638 REMARK 465 GLY A 639 REMARK 465 GLN A 640 REMARK 465 GLU A 641 REMARK 465 ASP A 642 REMARK 465 GLU A 643 REMARK 465 ALA A 644 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 ASP A 24 CG OD1 OD2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 VAL A 328 CG1 CG2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 LYS A 354 CG CD CE NZ REMARK 470 LYS A 357 CG CD CE NZ REMARK 470 GLU A 391 CG CD OE1 OE2 REMARK 470 LYS A 397 CG CD CE NZ REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 ASN A 459 CG OD1 ND2 REMARK 470 ARG A 461 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 521 CG CD OE1 OE2 REMARK 470 LYS A 524 CG CD CE NZ REMARK 470 ASP A 528 CG OD1 OD2 REMARK 470 GLU A 606 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 235 O HOH A 836 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 95 96.69 -63.33 REMARK 500 ALA A 97 -3.40 77.14 REMARK 500 ASP A 161 -5.19 74.25 REMARK 500 VAL A 162 98.66 -63.33 REMARK 500 ASP A 176 118.99 -35.00 REMARK 500 SER A 225 43.26 -73.30 REMARK 500 GLU A 253 41.89 37.90 REMARK 500 MET A 509 -35.12 -141.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 97 ASN A 98 146.97 REMARK 500 TRP A 546 GLU A 547 -144.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 159 NE2 REMARK 620 2 ASP A 161 OD2 87.4 REMARK 620 3 HIS A 227 NE2 87.4 80.6 REMARK 620 4 OGA A 702 O2' 95.5 169.3 89.2 REMARK 620 5 OGA A 702 O2 84.3 108.7 167.2 82.0 REMARK 620 6 HOH A 801 O 178.1 92.3 90.7 84.5 97.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NHK RELATED DB: PDB REMARK 900 RELATED ID: 4NHN RELATED DB: PDB REMARK 900 RELATED ID: 4NHX RELATED DB: PDB REMARK 900 RELATED ID: 4NHY RELATED DB: PDB REMARK 900 RELATED ID: 4NHM RELATED DB: PDB DBREF 4NHL A 21 644 UNP P40032 TPA1_YEAST 21 644 SEQADV 4NHL MET A -2 UNP P40032 INITIATING METHIONINE SEQADV 4NHL HIS A -1 UNP P40032 EXPRESSION TAG SEQADV 4NHL HIS A 0 UNP P40032 EXPRESSION TAG SEQADV 4NHL HIS A 1 UNP P40032 EXPRESSION TAG SEQADV 4NHL HIS A 2 UNP P40032 EXPRESSION TAG SEQADV 4NHL HIS A 3 UNP P40032 EXPRESSION TAG SEQADV 4NHL HIS A 4 UNP P40032 EXPRESSION TAG SEQADV 4NHL SER A 5 UNP P40032 EXPRESSION TAG SEQADV 4NHL SER A 6 UNP P40032 EXPRESSION TAG SEQADV 4NHL GLY A 7 UNP P40032 EXPRESSION TAG SEQADV 4NHL VAL A 8 UNP P40032 EXPRESSION TAG SEQADV 4NHL ASP A 9 UNP P40032 EXPRESSION TAG SEQADV 4NHL LEU A 10 UNP P40032 EXPRESSION TAG SEQADV 4NHL GLY A 11 UNP P40032 EXPRESSION TAG SEQADV 4NHL THR A 12 UNP P40032 EXPRESSION TAG SEQADV 4NHL GLU A 13 UNP P40032 EXPRESSION TAG SEQADV 4NHL ASN A 14 UNP P40032 EXPRESSION TAG SEQADV 4NHL LEU A 15 UNP P40032 EXPRESSION TAG SEQADV 4NHL TYR A 16 UNP P40032 EXPRESSION TAG SEQADV 4NHL PHE A 17 UNP P40032 EXPRESSION TAG SEQADV 4NHL GLN A 18 UNP P40032 EXPRESSION TAG SEQADV 4NHL SER A 19 UNP P40032 EXPRESSION TAG SEQADV 4NHL MET A 20 UNP P40032 EXPRESSION TAG SEQRES 1 A 647 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 647 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU GLU GLU SEQRES 3 A 647 ASP LYS ILE LYS GLY MET PHE ASN PRO LYS ILE TRP ASP SEQRES 4 A 647 LYS THR PHE GLN ASP GLY LEU LYS LYS GLU ILE GLU ASP SEQRES 5 A 647 SER GLN PRO TYR ASN TRP GLY THR ILE HIS GLU LEU VAL SEQRES 6 A 647 ASN ASP ASP LEU LEU ARG ALA VAL ARG LYS GLU ILE GLU SEQRES 7 A 647 THR GLU ILE HIS PHE THR LYS LYS GLU THR ASP ILE TYR SEQRES 8 A 647 ARG VAL ASN GLN SER GLY ASP LEU ALA ASN LEU SER GLY SEQRES 9 A 647 LEU ASP TRP ASP ASP LEU SER ARG LEU PRO ASN LEU PHE SEQRES 10 A 647 LYS LEU ARG GLN ILE LEU TYR SER LYS GLN TYR ARG ASP SEQRES 11 A 647 PHE PHE GLY TYR VAL THR LYS ALA GLY LYS LEU SER GLY SEQRES 12 A 647 SER LYS THR ASP MET SER ILE ASN THR TYR THR LYS GLY SEQRES 13 A 647 CYS HIS LEU LEU THR HIS ASP ASP VAL ILE GLY SER ARG SEQRES 14 A 647 ARG ILE SER PHE ILE LEU TYR LEU PRO ASP PRO ASP ARG SEQRES 15 A 647 LYS TRP LYS SER HIS TYR GLY GLY GLY LEU ARG LEU PHE SEQRES 16 A 647 PRO SER ILE LEU PRO ASN VAL PRO HIS SER ASP PRO SER SEQRES 17 A 647 ALA LYS LEU VAL PRO GLN PHE ASN GLN ILE ALA PHE PHE SEQRES 18 A 647 LYS VAL LEU PRO GLY PHE SER PHE HIS ASP VAL GLU GLU SEQRES 19 A 647 VAL LYS VAL ASP LYS HIS ARG LEU SER ILE GLN GLY TRP SEQRES 20 A 647 TYR HIS ILE PRO GLN VAL GLY GLU GLU GLY TYR ILE PRO SEQRES 21 A 647 GLY GLU GLU GLU ALA TRP VAL ARG ASN ASN THR SER THR SEQRES 22 A 647 LEU ALA GLN ILE GLU SER ASN VAL LEU GLU ASP PHE GLU SEQRES 23 A 647 PHE PRO LYS ASP GLU ARG ASN ILE LEU SER PHE HIS GLU SEQRES 24 A 647 VAL LYS HIS PHE GLU LYS MET LEU LYS GLY ASP ALA GLY SEQRES 25 A 647 ALA LYS THR ASP ASN THR PRO LYS GLU SER MET THR SER SEQRES 26 A 647 VAL ILE SER ASP SER VAL LYS LEU SER GLU ALA GLU PHE SEQRES 27 A 647 THR TYR LEU SER GLN TYR ILE SER PRO GLU HIS LEU SER SEQRES 28 A 647 SER LYS GLY ILE GLU LYS LEU GLN LYS GLN PHE VAL GLU SEQRES 29 A 647 ASN SER SER LEU GLN ILE GLU SER PHE LEU ASN ASP ASP SEQRES 30 A 647 LYS SER GLU LEU LEU LYS LYS VAL ILE LYS GLN LYS GLU SEQRES 31 A 647 LEU GLU GLN GLU CYS PRO TYR HIS SER LYS ASP VAL LYS SEQRES 32 A 647 ALA PRO TRP LYS THR ALA ILE PRO PRO HIS LYS ALA ARG SEQRES 33 A 647 TYR LEU TYR ILE ASP GLY LYS GLU TYR ARG ASN PHE GLN SEQRES 34 A 647 THR GLU ALA ASP ILE LEU GLU ALA LEU ASN ASN ASN ASP SEQRES 35 A 647 LEU PRO ASN PHE GLN PHE THR LYS ASP ALA ILE LYS ILE SEQRES 36 A 647 ILE SER ASP ALA SER GLY ASN SER ARG GLU ASN ASN PHE SEQRES 37 A 647 ASP ALA GLU LEU ALA LEU ILE ASP LEU ALA VAL PHE HIS SEQRES 38 A 647 LYS SER THR ILE PHE LYS LYS TYR LEU ALA LEU LEU THR SEQRES 39 A 647 SER LEU CYS PRO VAL SER GLU GLN ILE LEU ILE ARG ARG SEQRES 40 A 647 PHE ARG PRO GLY MET ASP PHE THR LEU ALA THR LYS CYS SEQRES 41 A 647 ARG PHE ASN GLU LEU LEU LYS SER ASN PRO ASP ILE ILE SEQRES 42 A 647 ASP ALA VAL LEU GLU GLY THR LEU CYS LEU THR PRO SER SEQRES 43 A 647 ALA GLY TRP GLU SER GLY GLU LEU GLY GLY TYR GLU LEU SEQRES 44 A 647 TYR MET MET ASP ASP ASP GLU ASP ASN LYS GLN TYR LEU SEQRES 45 A 647 LYS GLU ASP VAL GLU ASP ALA SER VAL TYR ARG ALA ASP SEQRES 46 A 647 ASP SER GLY ASP SER VAL LEU ILE ASN ASP PRO PRO ALA SEQRES 47 A 647 TRP ASN THR PHE ASN LEU VAL LEU ARG ASP GLU SER VAL SEQRES 48 A 647 LEU GLU PHE VAL LYS TYR VAL SER TRP SER ALA LYS SER SEQRES 49 A 647 SER ARG TRP ASP VAL LYS MET LYS TRP ASP VAL LYS SER SEQRES 50 A 647 CYS ASP GLU ASP GLY GLN GLU ASP GLU ALA HET MN A 701 1 HET OGA A 702 10 HETNAM MN MANGANESE (II) ION HETNAM OGA N-OXALYLGLYCINE FORMUL 2 MN MN 2+ FORMUL 3 OGA C4 H5 N O5 FORMUL 4 HOH *74(H2 O) HELIX 1 1 ILE A 26 PHE A 30 5 5 HELIX 2 2 ASN A 31 TRP A 35 5 5 HELIX 3 3 ASP A 36 ASP A 49 1 14 HELIX 4 4 ASN A 63 ILE A 78 1 16 HELIX 5 5 LEU A 110 TYR A 121 1 12 HELIX 6 6 SER A 122 LYS A 134 1 13 HELIX 7 7 LYS A 182 GLY A 186 5 5 HELIX 8 8 GLY A 251 TYR A 255 5 5 HELIX 9 9 LEU A 279 GLU A 283 5 5 HELIX 10 10 SER A 293 LYS A 305 1 13 HELIX 11 11 SER A 331 SER A 339 1 9 HELIX 12 12 SER A 343 LEU A 347 5 5 HELIX 13 13 SER A 348 SER A 363 1 16 HELIX 14 14 ASN A 372 GLN A 390 1 19 HELIX 15 15 HIS A 395 VAL A 399 5 5 HELIX 16 16 THR A 427 ASN A 436 1 10 HELIX 17 17 ASN A 442 SER A 457 1 16 HELIX 18 18 PHE A 465 SER A 480 1 16 HELIX 19 19 SER A 480 SER A 492 1 13 HELIX 20 20 ASN A 520 LYS A 524 5 5 SHEET 1 A 7 TRP A 55 ILE A 58 0 SHEET 2 A 7 GLN A 214 LYS A 219 -1 O PHE A 217 N GLY A 56 SHEET 3 A 7 ARG A 166 TYR A 173 -1 N SER A 169 O PHE A 218 SHEET 4 A 7 ARG A 238 HIS A 246 -1 O TYR A 245 N ILE A 168 SHEET 5 A 7 MET A 145 TYR A 150 -1 N ASN A 148 O SER A 240 SHEET 6 A 7 TYR A 88 GLN A 92 -1 N ASN A 91 O THR A 149 SHEET 7 A 7 THR A 81 GLU A 84 -1 N THR A 81 O GLN A 92 SHEET 1 B10 TRP A 55 ILE A 58 0 SHEET 2 B10 GLN A 214 LYS A 219 -1 O PHE A 217 N GLY A 56 SHEET 3 B10 ARG A 166 TYR A 173 -1 N SER A 169 O PHE A 218 SHEET 4 B10 ARG A 238 HIS A 246 -1 O TYR A 245 N ILE A 168 SHEET 5 B10 MET A 145 TYR A 150 -1 N ASN A 148 O SER A 240 SHEET 6 B10 TYR A 88 GLN A 92 -1 N ASN A 91 O THR A 149 SHEET 7 B10 HIS A 155 HIS A 159 -1 O HIS A 155 N ARG A 89 SHEET 8 B10 HIS A 227 VAL A 229 -1 O VAL A 229 N LEU A 156 SHEET 9 B10 LEU A 189 LEU A 191 -1 N ARG A 190 O ASP A 228 SHEET 10 B10 ALA A 206 LEU A 208 -1 O LEU A 208 N LEU A 189 SHEET 1 C 2 SER A 194 LEU A 196 0 SHEET 2 C 2 VAL A 199 PRO A 200 -1 O VAL A 199 N LEU A 196 SHEET 1 D 6 ASN A 290 ILE A 291 0 SHEET 2 D 6 SER A 497 PHE A 505 -1 O GLU A 498 N ASN A 290 SHEET 3 D 6 ARG A 623 TRP A 630 -1 O ARG A 623 N PHE A 505 SHEET 4 D 6 ALA A 532 LEU A 540 -1 N GLY A 536 O MET A 628 SHEET 5 D 6 TRP A 596 ASP A 605 -1 O ARG A 604 N VAL A 533 SHEET 6 D 6 SER A 364 GLU A 368 -1 N ILE A 367 O PHE A 599 SHEET 1 E 4 ASN A 290 ILE A 291 0 SHEET 2 E 4 SER A 497 PHE A 505 -1 O GLU A 498 N ASN A 290 SHEET 3 E 4 LEU A 415 ILE A 417 -1 N LEU A 415 O ARG A 504 SHEET 4 E 4 LYS A 404 THR A 405 -1 N LYS A 404 O TYR A 416 SHEET 1 F 2 ALA A 412 ARG A 413 0 SHEET 2 F 2 PHE A 511 THR A 512 -1 O PHE A 511 N ARG A 413 SHEET 1 G 2 LEU A 493 PRO A 495 0 SHEET 2 G 2 VAL A 632 SER A 634 -1 O LYS A 633 N CYS A 494 SHEET 1 H 4 THR A 515 LYS A 516 0 SHEET 2 H 4 LEU A 609 VAL A 612 -1 O GLU A 610 N THR A 515 SHEET 3 H 4 GLU A 555 MET A 558 -1 N LEU A 556 O PHE A 611 SHEET 4 H 4 VAL A 588 ASP A 592 -1 O ASP A 592 N GLU A 555 SSBOND 1 CYS A 494 CYS A 635 1555 1555 2.06 LINK NE2 HIS A 159 MN MN A 701 1555 1555 2.28 LINK OD2 ASP A 161 MN MN A 701 1555 1555 2.12 LINK NE2 HIS A 227 MN MN A 701 1555 1555 2.19 LINK MN MN A 701 O2' OGA A 702 1555 1555 2.04 LINK MN MN A 701 O2 OGA A 702 1555 1555 2.20 LINK MN MN A 701 O HOH A 801 1555 1555 2.22 CISPEP 1 GLN A 51 PRO A 52 0 -6.45 CISPEP 2 PHE A 284 PRO A 285 0 -2.91 CISPEP 3 ALA A 401 PRO A 402 0 8.35 CISPEP 4 ILE A 407 PRO A 408 0 -0.51 SITE 1 AC1 5 HIS A 159 ASP A 161 HIS A 227 OGA A 702 SITE 2 AC1 5 HOH A 801 SITE 1 AC2 12 LEU A 156 HIS A 159 ASP A 161 TYR A 173 SITE 2 AC2 12 LEU A 189 HIS A 227 VAL A 229 ARG A 238 SITE 3 AC2 12 GLN A 242 MN A 701 HOH A 801 HOH A 870 CRYST1 168.216 67.251 70.976 90.00 105.08 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005945 0.000000 0.001602 0.00000 SCALE2 0.000000 0.014870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014592 0.00000