data_4NI7 # _entry.id 4NI7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NI7 pdb_00004ni7 10.2210/pdb4ni7/pdb NDB NA2750 ? ? RCSB RCSB083234 ? ? WWPDB D_1000083234 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NI7 _pdbx_database_status.recvd_initial_deposition_date 2013-11-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Davies, D.' 1 'Edwards, T.' 2 'Gelinas, A.' 3 'Jarvis, T.' 4 'Clifton, M.C.' 5 # _citation.id primary _citation.title 'Crystal structure of interleukin-6 in complex with a modified nucleic Acid ligand.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 289 _citation.page_first 8720 _citation.page_last 8734 _citation.year 2014 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24415767 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.532697 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gelinas, A.D.' 1 ? primary 'Davies, D.R.' 2 ? primary 'Edwards, T.E.' 3 ? primary 'Rohloff, J.C.' 4 ? primary 'Carter, J.D.' 5 ? primary 'Zhang, C.' 6 ? primary 'Gupta, S.' 7 ? primary 'Ishikawa, Y.' 8 ? primary 'Hirota, M.' 9 ? primary 'Nakaishi, Y.' 10 ? primary 'Jarvis, T.C.' 11 ? primary 'Janjic, N.' 12 ? # _cell.entry_id 4NI7 _cell.length_a 50.230 _cell.length_b 50.230 _cell.length_c 103.630 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NI7 _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Interleukin-6 21137.156 1 ? ? ? ? 2 polymer syn 'SOMAmer SL1025' 11402.860 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 water nat water 18.015 29 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'IL-6, B-cell stimulatory factor 2, BSF-2, CTL differentiation factor, CDF, Hybridoma growth factor, Interferon beta-2, IFN-beta-2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGF NEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWL QDMTTHLILRSFKEFLQSSLRALRQM ; ;MAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGF NEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWL QDMTTHLILRSFKEFLQSSLRALRQM ; A ? 2 polydeoxyribonucleotide no yes ;(DG)(DG)(OMC)(DA)(DG)(OMG)(DUZ)(DUZ)(UPE)(DG)(DG)(2JU)(DA)(DUZ)(DUZ)(A2M)(DA) (DC)(A2M)(OMC)(DG)(DUZ)(DUZ)(DA)(DA)(DG)(DUZ)(OMC)(DG)(DUZ)(DG)(DG) ; GGCAGGXXXGGXAXXAACACGXXAAGXCGXGG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 PRO n 1 4 VAL n 1 5 PRO n 1 6 PRO n 1 7 GLY n 1 8 GLU n 1 9 ASP n 1 10 SER n 1 11 LYS n 1 12 ASP n 1 13 VAL n 1 14 ALA n 1 15 ALA n 1 16 PRO n 1 17 HIS n 1 18 ARG n 1 19 GLN n 1 20 PRO n 1 21 LEU n 1 22 THR n 1 23 SER n 1 24 SER n 1 25 GLU n 1 26 ARG n 1 27 ILE n 1 28 ASP n 1 29 LYS n 1 30 GLN n 1 31 ILE n 1 32 ARG n 1 33 TYR n 1 34 ILE n 1 35 LEU n 1 36 ASP n 1 37 GLY n 1 38 ILE n 1 39 SER n 1 40 ALA n 1 41 LEU n 1 42 ARG n 1 43 LYS n 1 44 GLU n 1 45 THR n 1 46 CYS n 1 47 ASN n 1 48 LYS n 1 49 SER n 1 50 ASN n 1 51 MET n 1 52 CYS n 1 53 GLU n 1 54 SER n 1 55 SER n 1 56 LYS n 1 57 GLU n 1 58 ALA n 1 59 LEU n 1 60 ALA n 1 61 GLU n 1 62 ASN n 1 63 ASN n 1 64 LEU n 1 65 ASN n 1 66 LEU n 1 67 PRO n 1 68 LYS n 1 69 MET n 1 70 ALA n 1 71 GLU n 1 72 LYS n 1 73 ASP n 1 74 GLY n 1 75 CYS n 1 76 PHE n 1 77 GLN n 1 78 SER n 1 79 GLY n 1 80 PHE n 1 81 ASN n 1 82 GLU n 1 83 GLU n 1 84 THR n 1 85 CYS n 1 86 LEU n 1 87 VAL n 1 88 LYS n 1 89 ILE n 1 90 ILE n 1 91 THR n 1 92 GLY n 1 93 LEU n 1 94 LEU n 1 95 GLU n 1 96 PHE n 1 97 GLU n 1 98 VAL n 1 99 TYR n 1 100 LEU n 1 101 GLU n 1 102 TYR n 1 103 LEU n 1 104 GLN n 1 105 ASN n 1 106 ARG n 1 107 PHE n 1 108 GLU n 1 109 SER n 1 110 SER n 1 111 GLU n 1 112 GLU n 1 113 GLN n 1 114 ALA n 1 115 ARG n 1 116 ALA n 1 117 VAL n 1 118 GLN n 1 119 MET n 1 120 SER n 1 121 THR n 1 122 LYS n 1 123 VAL n 1 124 LEU n 1 125 ILE n 1 126 GLN n 1 127 PHE n 1 128 LEU n 1 129 GLN n 1 130 LYS n 1 131 LYS n 1 132 ALA n 1 133 LYS n 1 134 ASN n 1 135 LEU n 1 136 ASP n 1 137 ALA n 1 138 ILE n 1 139 THR n 1 140 THR n 1 141 PRO n 1 142 ASP n 1 143 PRO n 1 144 THR n 1 145 THR n 1 146 ASN n 1 147 ALA n 1 148 SER n 1 149 LEU n 1 150 LEU n 1 151 THR n 1 152 LYS n 1 153 LEU n 1 154 GLN n 1 155 ALA n 1 156 GLN n 1 157 ASN n 1 158 GLN n 1 159 TRP n 1 160 LEU n 1 161 GLN n 1 162 ASP n 1 163 MET n 1 164 THR n 1 165 THR n 1 166 HIS n 1 167 LEU n 1 168 ILE n 1 169 LEU n 1 170 ARG n 1 171 SER n 1 172 PHE n 1 173 LYS n 1 174 GLU n 1 175 PHE n 1 176 LEU n 1 177 GLN n 1 178 SER n 1 179 SER n 1 180 LEU n 1 181 ARG n 1 182 ALA n 1 183 LEU n 1 184 ARG n 1 185 GLN n 1 186 MET n 2 1 DG n 2 2 DG n 2 3 OMC n 2 4 DA n 2 5 DG n 2 6 OMG n 2 7 DUZ n 2 8 DUZ n 2 9 UPE n 2 10 DG n 2 11 DG n 2 12 2JU n 2 13 DA n 2 14 DUZ n 2 15 DUZ n 2 16 A2M n 2 17 DA n 2 18 DC n 2 19 A2M n 2 20 OMC n 2 21 DG n 2 22 DUZ n 2 23 DUZ n 2 24 DA n 2 25 DA n 2 26 DG n 2 27 DUZ n 2 28 OMC n 2 29 DG n 2 30 DUZ n 2 31 DG n 2 32 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'IL6, IFNB2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP IL6_HUMAN P05231 1 ;APVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFN EETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWLQ DMTTHLILRSFKEFLQSSLRALRQM ; 28 ? 2 PDB 4NI7 4NI7 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4NI7 A 2 ? 186 ? P05231 28 ? 212 ? 0 184 2 2 4NI7 B 1 ? 32 ? 4NI7 1 ? 32 ? 1 32 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4NI7 _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P05231 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num -1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2JU 'DNA linking' . ;2'-deoxy-5-[(naphthalen-1-ylmethyl)carbamoyl]uridine 5'-(dihydrogen phosphate) ; ? 'C21 H22 N3 O9 P' 491.388 A2M 'RNA linking' n ;2'-O-methyladenosine 5'-(dihydrogen phosphate) ; ? 'C11 H16 N5 O7 P' 361.248 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DUZ 'DNA linking' n ;5-(benzylcarbamoyl)-2'-deoxyuridine 5'-(dihydrogen phosphate) ; ? 'C17 H20 N3 O9 P' 441.329 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 OMG 'RNA linking' n "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UPE 'DNA linking' n ;2'-deoxy-5-[(2-phenylethyl)carbamoyl]uridine 5'-(dihydrogen phosphate) ; ? 'C18 H22 N3 O9 P' 455.356 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4NI7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 51.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;31% PEG 3350, 180 mM LiNO3, 100 mM Sodium Acetate (pH 5.5), 2.5% Hexamine Cobalt Chloride, VAPOR DIFFUSION, SITTING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-11-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03318 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength 1.03318 _diffrn_source.pdbx_wavelength_list 1.03318 # _reflns.entry_id 4NI7 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.400 _reflns.number_obs 11411 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.04000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.8900 _reflns.B_iso_Wilson_estimate 65.61 _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.46 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.61400 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.100 _reflns_shell.pdbx_redundancy 6.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4NI7 _refine.ls_number_reflns_obs 11384 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.50 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.224 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.222 _refine.ls_R_factor_R_free 0.260 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 570 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.B_iso_mean 59.79 _refine.aniso_B[1][1] 11.15000 _refine.aniso_B[2][2] 11.15000 _refine.aniso_B[3][3] -22.30000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE' _refine.pdbx_starting_model 'PDB ENTRY 1IL6' _refine.pdbx_method_to_determine_struct 'SAD WITH MR' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.087 _refine.pdbx_overall_ESU_R_Free 0.056 _refine.overall_SU_ML 0.151 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 14.870 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1130 _refine_hist.pdbx_number_atoms_nucleic_acid 729 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 1890 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 43.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.010 0.021 ? 1959 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.922 2.431 ? 2779 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 4.915 5.000 ? 148 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 45.308 24.186 ? 43 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 16.021 15.000 ? 195 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 21.769 15.000 ? 7 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.128 0.200 ? 315 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.020 ? 1278 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.699 1.500 ? 753 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1.286 2.000 ? 1193 ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it 1.610 3.000 ? 1206 ? 'X-RAY DIFFRACTION' r_scbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it 2.498 4.500 ? 1586 ? 'X-RAY DIFFRACTION' r_scangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.46 _refine_ls_shell.number_reflns_R_work 777 _refine_ls_shell.R_factor_R_work 0.2800 _refine_ls_shell.percent_reflns_obs 99.15 _refine_ls_shell.R_factor_R_free 0.4040 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4NI7 _struct.title 'Crystal structure of human interleukin 6 in complex with a modified nucleotide aptamer (SOMAMER SL1025)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NI7 _struct_keywords.pdbx_keywords CYTOKINE/DNA _struct_keywords.text 'Interleukin-6, CYTOKINE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ;BIOMOLECULE: NULL SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON BURIED SURFACE AREA. REMARK: MONOMER ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 22 ? ASN A 47 ? THR A 20 ASN A 45 1 ? 26 HELX_P HELX_P2 2 ALA A 70 ? GLY A 74 ? ALA A 68 GLY A 72 5 ? 5 HELX_P HELX_P3 3 ASN A 81 ? GLN A 104 ? ASN A 79 GLN A 102 1 ? 24 HELX_P HELX_P4 4 SER A 110 ? ALA A 132 ? SER A 108 ALA A 130 1 ? 23 HELX_P HELX_P5 5 ASP A 142 ? GLN A 156 ? ASP A 140 GLN A 154 1 ? 15 HELX_P HELX_P6 6 ASN A 157 ? ARG A 184 ? ASN A 155 ARG A 182 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 75 SG ? ? ? 1_555 A CYS 85 SG ? ? A CYS 73 A CYS 83 1_555 ? ? ? ? ? ? ? 2.035 ? ? covale1 covale both ? B DG 2 "O3'" ? ? ? 1_555 B OMC 3 P ? ? B DG 2 B OMC 3 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? B OMC 3 "O3'" ? ? ? 1_555 B DA 4 P ? ? B OMC 3 B DA 4 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale3 covale both ? B DG 5 "O3'" ? ? ? 1_555 B OMG 6 P ? ? B DG 5 B OMG 6 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale4 covale both ? B OMG 6 "O3'" ? ? ? 1_555 B DUZ 7 P ? ? B OMG 6 B DUZ 7 1_555 ? ? ? ? ? ? ? 1.583 ? ? covale5 covale one ? B DUZ 7 "O3'" ? ? ? 1_555 B DUZ 8 P ? ? B DUZ 7 B DUZ 8 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale6 covale one ? B DUZ 8 "O3'" ? ? ? 1_555 B UPE 9 P ? ? B DUZ 8 B UPE 9 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale7 covale one ? B UPE 9 "O3'" ? ? ? 1_555 B DG 10 P ? ? B UPE 9 B DG 10 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale8 covale both ? B DG 11 "O3'" ? ? ? 1_555 B 2JU 12 P ? ? B DG 11 B 2JU 12 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale9 covale one ? B 2JU 12 "O3'" ? ? ? 1_555 B DA 13 P ? ? B 2JU 12 B DA 13 1_555 ? ? ? ? ? ? ? 1.579 ? ? covale10 covale both ? B DA 13 "O3'" ? ? ? 1_555 B DUZ 14 P ? ? B DA 13 B DUZ 14 1_555 ? ? ? ? ? ? ? 1.584 ? ? covale11 covale one ? B DUZ 14 "O3'" ? ? ? 1_555 B DUZ 15 P ? ? B DUZ 14 B DUZ 15 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale12 covale one ? B DUZ 15 "O3'" ? ? ? 1_555 B A2M 16 P ? ? B DUZ 15 B A2M 16 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale13 covale one ? B A2M 16 "O3'" ? ? ? 1_555 B DA 17 P ? ? B A2M 16 B DA 17 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale14 covale both ? B DC 18 "O3'" ? ? ? 1_555 B A2M 19 P ? ? B DC 18 B A2M 19 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale15 covale both ? B DG 21 "O3'" ? ? ? 1_555 B DUZ 22 P ? ? B DG 21 B DUZ 22 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale16 covale one ? B DUZ 22 "O3'" ? ? ? 1_555 B DUZ 23 P ? ? B DUZ 22 B DUZ 23 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale17 covale one ? B DUZ 23 "O3'" ? ? ? 1_555 B DA 24 P ? ? B DUZ 23 B DA 24 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale18 covale both ? B DG 26 "O3'" ? ? ? 1_555 B DUZ 27 P ? ? B DG 26 B DUZ 27 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale19 covale one ? B DUZ 27 "O3'" ? ? ? 1_555 B OMC 28 P ? ? B DUZ 27 B OMC 28 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale20 covale both ? B OMC 28 "O3'" ? ? ? 1_555 B DG 29 P ? ? B OMC 28 B DG 29 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale21 covale both ? B DG 29 "O3'" ? ? ? 1_555 B DUZ 30 P ? ? B DG 29 B DUZ 30 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale22 covale one ? B DUZ 30 "O3'" ? ? ? 1_555 B DG 31 P ? ? B DUZ 30 B DG 31 1_555 ? ? ? ? ? ? ? 1.596 ? ? metalc1 metalc ? ? B DG 1 O6 ? ? ? 1_555 C NA . NA ? ? B DG 1 B NA 101 1_555 ? ? ? ? ? ? ? 2.450 ? ? metalc2 metalc ? ? B DG 2 O6 ? ? ? 1_555 D NA . NA ? ? B DG 2 B NA 102 1_555 ? ? ? ? ? ? ? 2.237 ? ? metalc3 metalc ? ? B DG 5 O6 ? ? ? 1_555 D NA . NA ? ? B DG 5 B NA 102 1_555 ? ? ? ? ? ? ? 2.413 ? ? metalc4 metalc ? ? B OMG 6 O6 ? ? ? 1_555 C NA . NA ? ? B OMG 6 B NA 101 1_555 ? ? ? ? ? ? ? 2.370 ? ? metalc5 metalc ? ? B UPE 9 O22 ? ? ? 1_555 C NA . NA ? ? B UPE 9 B NA 101 1_555 ? ? ? ? ? ? ? 2.594 ? ? metalc6 metalc ? ? B DG 10 O6 ? ? ? 1_555 C NA . NA ? ? B DG 10 B NA 101 1_555 ? ? ? ? ? ? ? 2.493 ? ? metalc7 metalc ? ? B DG 10 O6 ? ? ? 1_555 D NA . NA ? ? B DG 10 B NA 102 1_555 ? ? ? ? ? ? ? 2.626 ? ? metalc8 metalc ? ? B DG 11 O6 ? ? ? 1_555 D NA . NA ? ? B DG 11 B NA 102 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc9 metalc ? ? B DG 31 O6 ? ? ? 1_555 D NA . NA ? ? B DG 31 B NA 102 1_555 ? ? ? ? ? ? ? 2.337 ? ? metalc10 metalc ? ? B DG 32 O6 ? ? ? 1_555 C NA . NA ? ? B DG 32 B NA 101 1_555 ? ? ? ? ? ? ? 2.533 ? ? metalc11 metalc ? ? B DG 32 O6 ? ? ? 1_555 D NA . NA ? ? B DG 32 B NA 102 1_555 ? ? ? ? ? ? ? 3.110 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 B OMG 6 O6 ? ? B DG 1 B OMG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 B OMG 6 N7 ? ? B DG 1 B OMG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? B DG 1 N7 ? ? ? 1_555 B DG 32 N2 ? ? B DG 1 B DG 32 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DG 32 N1 ? ? B DG 1 B DG 32 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? B DG 2 N7 ? ? ? 1_555 B DG 5 N2 ? ? B DG 2 B DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 B DG 5 N1 ? ? B DG 2 B DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DG 31 O6 ? ? B DG 2 B DG 31 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DG 31 N7 ? ? B DG 2 B DG 31 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? B OMC 3 N3 ? ? ? 1_555 B DG 29 N2 ? ? B OMC 3 B DG 29 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog10 hydrog ? ? B OMC 3 O2 ? ? ? 1_555 B DG 29 N1 ? ? B OMC 3 B DG 29 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog11 hydrog ? ? B DA 4 N6 ? ? ? 1_555 B DG 31 O6 ? ? B DA 4 B DG 31 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? ? hydrog12 hydrog ? ? B DG 5 N7 ? ? ? 1_555 B DG 11 N2 ? ? B DG 5 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? B DG 5 O6 ? ? ? 1_555 B DG 11 N1 ? ? B DG 5 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? B OMG 6 N1 ? ? ? 1_555 B DG 10 O6 ? ? B OMG 6 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? B OMG 6 N2 ? ? ? 1_555 B DG 10 N7 ? ? B OMG 6 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? B DG 10 N1 ? ? ? 1_555 B DG 32 O6 ? ? B DG 10 B DG 32 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? B DG 10 N2 ? ? ? 1_555 B DG 32 N7 ? ? B DG 10 B DG 32 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? B DG 11 N7 ? ? ? 1_555 B DG 31 N2 ? ? B DG 11 B DG 31 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? B DG 11 O6 ? ? ? 1_555 B DG 31 N1 ? ? B DG 11 B DG 31 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? B DA 13 N6 ? ? ? 1_555 B DG 26 N3 ? ? B DA 13 B DG 26 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog21 hydrog ? ? B DA 13 N7 ? ? ? 1_555 B DG 26 N2 ? ? B DA 13 B DG 26 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog22 hydrog ? ? B DC 18 O2 ? ? ? 1_555 B DG 21 N1 ? ? B DC 18 B DG 21 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NA 101 ? 6 'BINDING SITE FOR RESIDUE NA B 101' AC2 Software B NA 102 ? 10 'BINDING SITE FOR RESIDUE NA B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG B 1 ? DG B 1 . ? 1_555 ? 2 AC1 6 OMG B 6 ? OMG B 6 . ? 1_555 ? 3 AC1 6 UPE B 9 ? UPE B 9 . ? 1_555 ? 4 AC1 6 DG B 10 ? DG B 10 . ? 1_555 ? 5 AC1 6 DG B 32 ? DG B 32 . ? 1_555 ? 6 AC1 6 NA D . ? NA B 102 . ? 1_555 ? 7 AC2 10 DG B 1 ? DG B 1 . ? 1_555 ? 8 AC2 10 DG B 2 ? DG B 2 . ? 1_555 ? 9 AC2 10 DA B 4 ? DA B 4 . ? 1_555 ? 10 AC2 10 DG B 5 ? DG B 5 . ? 1_555 ? 11 AC2 10 OMG B 6 ? OMG B 6 . ? 1_555 ? 12 AC2 10 DG B 10 ? DG B 10 . ? 1_555 ? 13 AC2 10 DG B 11 ? DG B 11 . ? 1_555 ? 14 AC2 10 DG B 31 ? DG B 31 . ? 1_555 ? 15 AC2 10 DG B 32 ? DG B 32 . ? 1_555 ? 16 AC2 10 NA C . ? NA B 101 . ? 1_555 ? # _database_PDB_matrix.entry_id 4NI7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4NI7 _atom_sites.fract_transf_matrix[1][1] 0.019908 _atom_sites.fract_transf_matrix[1][2] 0.011494 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022988 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009650 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -1 ? ? ? A . n A 1 2 ALA 2 0 ? ? ? A . n A 1 3 PRO 3 1 ? ? ? A . n A 1 4 VAL 4 2 ? ? ? A . n A 1 5 PRO 5 3 ? ? ? A . n A 1 6 PRO 6 4 ? ? ? A . n A 1 7 GLY 7 5 ? ? ? A . n A 1 8 GLU 8 6 ? ? ? A . n A 1 9 ASP 9 7 ? ? ? A . n A 1 10 SER 10 8 ? ? ? A . n A 1 11 LYS 11 9 ? ? ? A . n A 1 12 ASP 12 10 ? ? ? A . n A 1 13 VAL 13 11 ? ? ? A . n A 1 14 ALA 14 12 ? ? ? A . n A 1 15 ALA 15 13 ? ? ? A . n A 1 16 PRO 16 14 ? ? ? A . n A 1 17 HIS 17 15 ? ? ? A . n A 1 18 ARG 18 16 16 ARG ARG A . n A 1 19 GLN 19 17 17 GLN GLN A . n A 1 20 PRO 20 18 18 PRO PRO A . n A 1 21 LEU 21 19 19 LEU LEU A . n A 1 22 THR 22 20 20 THR THR A . n A 1 23 SER 23 21 21 SER SER A . n A 1 24 SER 24 22 22 SER SER A . n A 1 25 GLU 25 23 23 GLU GLU A . n A 1 26 ARG 26 24 24 ARG ARG A . n A 1 27 ILE 27 25 25 ILE ILE A . n A 1 28 ASP 28 26 26 ASP ASP A . n A 1 29 LYS 29 27 27 LYS LYS A . n A 1 30 GLN 30 28 28 GLN GLN A . n A 1 31 ILE 31 29 29 ILE ILE A . n A 1 32 ARG 32 30 30 ARG ARG A . n A 1 33 TYR 33 31 31 TYR TYR A . n A 1 34 ILE 34 32 32 ILE ILE A . n A 1 35 LEU 35 33 33 LEU LEU A . n A 1 36 ASP 36 34 34 ASP ASP A . n A 1 37 GLY 37 35 35 GLY GLY A . n A 1 38 ILE 38 36 36 ILE ILE A . n A 1 39 SER 39 37 37 SER SER A . n A 1 40 ALA 40 38 38 ALA ALA A . n A 1 41 LEU 41 39 39 LEU LEU A . n A 1 42 ARG 42 40 40 ARG ARG A . n A 1 43 LYS 43 41 41 LYS LYS A . n A 1 44 GLU 44 42 42 GLU GLU A . n A 1 45 THR 45 43 43 THR THR A . n A 1 46 CYS 46 44 44 CYS CYS A . n A 1 47 ASN 47 45 45 ASN ASN A . n A 1 48 LYS 48 46 46 LYS LYS A . n A 1 49 SER 49 47 47 SER SER A . n A 1 50 ASN 50 48 ? ? ? A . n A 1 51 MET 51 49 ? ? ? A . n A 1 52 CYS 52 50 ? ? ? A . n A 1 53 GLU 53 51 ? ? ? A . n A 1 54 SER 54 52 ? ? ? A . n A 1 55 SER 55 53 ? ? ? A . n A 1 56 LYS 56 54 ? ? ? A . n A 1 57 GLU 57 55 ? ? ? A . n A 1 58 ALA 58 56 ? ? ? A . n A 1 59 LEU 59 57 ? ? ? A . n A 1 60 ALA 60 58 ? ? ? A . n A 1 61 GLU 61 59 ? ? ? A . n A 1 62 ASN 62 60 ? ? ? A . n A 1 63 ASN 63 61 61 ASN ASN A . n A 1 64 LEU 64 62 62 LEU LEU A . n A 1 65 ASN 65 63 63 ASN ASN A . n A 1 66 LEU 66 64 64 LEU LEU A . n A 1 67 PRO 67 65 65 PRO PRO A . n A 1 68 LYS 68 66 66 LYS LYS A . n A 1 69 MET 69 67 67 MET MET A . n A 1 70 ALA 70 68 68 ALA ALA A . n A 1 71 GLU 71 69 69 GLU GLU A . n A 1 72 LYS 72 70 70 LYS LYS A . n A 1 73 ASP 73 71 71 ASP ASP A . n A 1 74 GLY 74 72 72 GLY GLY A . n A 1 75 CYS 75 73 73 CYS CYS A . n A 1 76 PHE 76 74 74 PHE PHE A . n A 1 77 GLN 77 75 75 GLN GLN A . n A 1 78 SER 78 76 76 SER SER A . n A 1 79 GLY 79 77 77 GLY GLY A . n A 1 80 PHE 80 78 78 PHE PHE A . n A 1 81 ASN 81 79 79 ASN ASN A . n A 1 82 GLU 82 80 80 GLU GLU A . n A 1 83 GLU 83 81 81 GLU GLU A . n A 1 84 THR 84 82 82 THR THR A . n A 1 85 CYS 85 83 83 CYS CYS A . n A 1 86 LEU 86 84 84 LEU LEU A . n A 1 87 VAL 87 85 85 VAL VAL A . n A 1 88 LYS 88 86 86 LYS LYS A . n A 1 89 ILE 89 87 87 ILE ILE A . n A 1 90 ILE 90 88 88 ILE ILE A . n A 1 91 THR 91 89 89 THR THR A . n A 1 92 GLY 92 90 90 GLY GLY A . n A 1 93 LEU 93 91 91 LEU LEU A . n A 1 94 LEU 94 92 92 LEU LEU A . n A 1 95 GLU 95 93 93 GLU GLU A . n A 1 96 PHE 96 94 94 PHE PHE A . n A 1 97 GLU 97 95 95 GLU GLU A . n A 1 98 VAL 98 96 96 VAL VAL A . n A 1 99 TYR 99 97 97 TYR TYR A . n A 1 100 LEU 100 98 98 LEU LEU A . n A 1 101 GLU 101 99 99 GLU GLU A . n A 1 102 TYR 102 100 100 TYR TYR A . n A 1 103 LEU 103 101 101 LEU LEU A . n A 1 104 GLN 104 102 102 GLN GLN A . n A 1 105 ASN 105 103 103 ASN ASN A . n A 1 106 ARG 106 104 104 ARG ARG A . n A 1 107 PHE 107 105 105 PHE PHE A . n A 1 108 GLU 108 106 106 GLU GLU A . n A 1 109 SER 109 107 107 SER SER A . n A 1 110 SER 110 108 108 SER SER A . n A 1 111 GLU 111 109 109 GLU GLU A . n A 1 112 GLU 112 110 110 GLU GLU A . n A 1 113 GLN 113 111 111 GLN GLN A . n A 1 114 ALA 114 112 112 ALA ALA A . n A 1 115 ARG 115 113 113 ARG ARG A . n A 1 116 ALA 116 114 114 ALA ALA A . n A 1 117 VAL 117 115 115 VAL VAL A . n A 1 118 GLN 118 116 116 GLN GLN A . n A 1 119 MET 119 117 117 MET MET A . n A 1 120 SER 120 118 118 SER SER A . n A 1 121 THR 121 119 119 THR THR A . n A 1 122 LYS 122 120 120 LYS LYS A . n A 1 123 VAL 123 121 121 VAL VAL A . n A 1 124 LEU 124 122 122 LEU LEU A . n A 1 125 ILE 125 123 123 ILE ILE A . n A 1 126 GLN 126 124 124 GLN GLN A . n A 1 127 PHE 127 125 125 PHE PHE A . n A 1 128 LEU 128 126 126 LEU LEU A . n A 1 129 GLN 129 127 127 GLN GLN A . n A 1 130 LYS 130 128 128 LYS LYS A . n A 1 131 LYS 131 129 129 LYS LYS A . n A 1 132 ALA 132 130 130 ALA ALA A . n A 1 133 LYS 133 131 ? ? ? A . n A 1 134 ASN 134 132 ? ? ? A . n A 1 135 LEU 135 133 ? ? ? A . n A 1 136 ASP 136 134 ? ? ? A . n A 1 137 ALA 137 135 ? ? ? A . n A 1 138 ILE 138 136 136 ILE ILE A . n A 1 139 THR 139 137 137 THR THR A . n A 1 140 THR 140 138 138 THR THR A . n A 1 141 PRO 141 139 139 PRO PRO A . n A 1 142 ASP 142 140 140 ASP ASP A . n A 1 143 PRO 143 141 141 PRO PRO A . n A 1 144 THR 144 142 142 THR THR A . n A 1 145 THR 145 143 143 THR THR A . n A 1 146 ASN 146 144 144 ASN ASN A . n A 1 147 ALA 147 145 145 ALA ALA A . n A 1 148 SER 148 146 146 SER SER A . n A 1 149 LEU 149 147 147 LEU LEU A . n A 1 150 LEU 150 148 148 LEU LEU A . n A 1 151 THR 151 149 149 THR THR A . n A 1 152 LYS 152 150 150 LYS LYS A . n A 1 153 LEU 153 151 151 LEU LEU A . n A 1 154 GLN 154 152 152 GLN GLN A . n A 1 155 ALA 155 153 153 ALA ALA A . n A 1 156 GLN 156 154 154 GLN GLN A . n A 1 157 ASN 157 155 155 ASN ASN A . n A 1 158 GLN 158 156 156 GLN GLN A . n A 1 159 TRP 159 157 157 TRP TRP A . n A 1 160 LEU 160 158 158 LEU LEU A . n A 1 161 GLN 161 159 159 GLN GLN A . n A 1 162 ASP 162 160 160 ASP ASP A . n A 1 163 MET 163 161 161 MET MET A . n A 1 164 THR 164 162 162 THR THR A . n A 1 165 THR 165 163 163 THR THR A . n A 1 166 HIS 166 164 164 HIS HIS A . n A 1 167 LEU 167 165 165 LEU LEU A . n A 1 168 ILE 168 166 166 ILE ILE A . n A 1 169 LEU 169 167 167 LEU LEU A . n A 1 170 ARG 170 168 168 ARG ARG A . n A 1 171 SER 171 169 169 SER SER A . n A 1 172 PHE 172 170 170 PHE PHE A . n A 1 173 LYS 173 171 171 LYS LYS A . n A 1 174 GLU 174 172 172 GLU GLU A . n A 1 175 PHE 175 173 173 PHE PHE A . n A 1 176 LEU 176 174 174 LEU LEU A . n A 1 177 GLN 177 175 175 GLN GLN A . n A 1 178 SER 178 176 176 SER SER A . n A 1 179 SER 179 177 177 SER SER A . n A 1 180 LEU 180 178 178 LEU LEU A . n A 1 181 ARG 181 179 179 ARG ARG A . n A 1 182 ALA 182 180 180 ALA ALA A . n A 1 183 LEU 183 181 181 LEU LEU A . n A 1 184 ARG 184 182 182 ARG ARG A . n A 1 185 GLN 185 183 183 GLN GLN A . n A 1 186 MET 186 184 184 MET MET A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 OMC 3 3 3 OMC OMC B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 OMG 6 6 6 OMG OMG B . n B 2 7 DUZ 7 7 7 DUZ BDU B . n B 2 8 DUZ 8 8 8 DUZ BDU B . n B 2 9 UPE 9 9 9 UPE PEU B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 2JU 12 12 12 2JU NDU B . n B 2 13 DA 13 13 13 DA DA B . n B 2 14 DUZ 14 14 14 DUZ BDU B . n B 2 15 DUZ 15 15 15 DUZ BDU B . n B 2 16 A2M 16 16 16 A2M A2M B . n B 2 17 DA 17 17 17 DA DA B . n B 2 18 DC 18 18 18 DC DC B . n B 2 19 A2M 19 19 19 A2M A2M B . n B 2 20 OMC 20 20 ? ? ? B . n B 2 21 DG 21 21 21 DG DG B . n B 2 22 DUZ 22 22 22 DUZ BDU B . n B 2 23 DUZ 23 23 23 DUZ BDU B . n B 2 24 DA 24 24 24 DA DA B . n B 2 25 DA 25 25 25 DA DA B . n B 2 26 DG 26 26 26 DG DG B . n B 2 27 DUZ 27 27 27 DUZ BDU B . n B 2 28 OMC 28 28 28 OMC OMC B . n B 2 29 DG 29 29 29 DG DG B . n B 2 30 DUZ 30 30 30 DUZ BDU B . n B 2 31 DG 31 31 31 DG DG B . n B 2 32 DG 32 32 32 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA 1 101 1 NA NA B . D 3 NA 1 102 2 NA NA B . E 4 HOH 1 201 1 HOH HOH A . E 4 HOH 2 202 2 HOH HOH A . E 4 HOH 3 203 3 HOH HOH A . E 4 HOH 4 204 5 HOH HOH A . E 4 HOH 5 205 6 HOH HOH A . E 4 HOH 6 206 7 HOH HOH A . E 4 HOH 7 207 8 HOH HOH A . E 4 HOH 8 208 12 HOH HOH A . E 4 HOH 9 209 13 HOH HOH A . E 4 HOH 10 210 14 HOH HOH A . E 4 HOH 11 211 15 HOH HOH A . E 4 HOH 12 212 19 HOH HOH A . E 4 HOH 13 213 20 HOH HOH A . E 4 HOH 14 214 21 HOH HOH A . E 4 HOH 15 215 22 HOH HOH A . E 4 HOH 16 216 27 HOH HOH A . E 4 HOH 17 217 28 HOH HOH A . E 4 HOH 18 218 29 HOH HOH A . F 4 HOH 1 201 4 HOH HOH B . F 4 HOH 2 202 9 HOH HOH B . F 4 HOH 3 203 10 HOH HOH B . F 4 HOH 4 204 11 HOH HOH B . F 4 HOH 5 205 16 HOH HOH B . F 4 HOH 6 206 17 HOH HOH B . F 4 HOH 7 207 18 HOH HOH B . F 4 HOH 8 208 23 HOH HOH B . F 4 HOH 9 209 24 HOH HOH B . F 4 HOH 10 210 25 HOH HOH B . F 4 HOH 11 211 26 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B OMC 3 B OMC 3 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 2 B OMG 6 B OMG 6 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 3 B DUZ 7 B DUZ 7 ? DU ? 4 B DUZ 8 B DUZ 8 ? DU ? 5 B UPE 9 B UPE 9 ? DU ? 6 B DUZ 14 B DUZ 14 ? DU ? 7 B DUZ 15 B DUZ 15 ? DU ? 8 B A2M 16 B A2M 16 ? A ? 9 B A2M 19 B A2M 19 ? A ? 10 B DUZ 22 B DUZ 22 ? DU ? 11 B DUZ 23 B DUZ 23 ? DU ? 12 B DUZ 27 B DUZ 27 ? DU ? 13 B OMC 28 B OMC 28 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 14 B DUZ 30 B DUZ 30 ? DU ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? B DG 1 ? B DG 1 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O6 ? B OMG 6 ? B OMG 6 ? 1_555 90.1 ? 2 O6 ? B DG 1 ? B DG 1 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O22 ? B UPE 9 ? B UPE 9 ? 1_555 84.1 ? 3 O6 ? B OMG 6 ? B OMG 6 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O22 ? B UPE 9 ? B UPE 9 ? 1_555 136.9 ? 4 O6 ? B DG 1 ? B DG 1 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 125.6 ? 5 O6 ? B OMG 6 ? B OMG 6 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 83.7 ? 6 O22 ? B UPE 9 ? B UPE 9 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 133.1 ? 7 O6 ? B DG 1 ? B DG 1 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O6 ? B DG 32 ? B DG 32 ? 1_555 78.9 ? 8 O6 ? B OMG 6 ? B OMG 6 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O6 ? B DG 32 ? B DG 32 ? 1_555 138.7 ? 9 O22 ? B UPE 9 ? B UPE 9 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O6 ? B DG 32 ? B DG 32 ? 1_555 81.9 ? 10 O6 ? B DG 10 ? B DG 10 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O6 ? B DG 32 ? B DG 32 ? 1_555 71.6 ? 11 O6 ? B DG 2 ? B DG 2 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 87.6 ? 12 O6 ? B DG 2 ? B DG 2 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 139.5 ? 13 O6 ? B DG 5 ? B DG 5 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 85.5 ? 14 O6 ? B DG 2 ? B DG 2 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 141.6 ? 15 O6 ? B DG 5 ? B DG 5 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 78.6 ? 16 O6 ? B DG 10 ? B DG 10 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 75.4 ? 17 O6 ? B DG 2 ? B DG 2 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 31 ? B DG 31 ? 1_555 88.4 ? 18 O6 ? B DG 5 ? B DG 5 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 31 ? B DG 31 ? 1_555 150.4 ? 19 O6 ? B DG 10 ? B DG 10 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 31 ? B DG 31 ? 1_555 115.5 ? 20 O6 ? B DG 11 ? B DG 11 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 31 ? B DG 31 ? 1_555 86.6 ? 21 O6 ? B DG 2 ? B DG 2 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 32 ? B DG 32 ? 1_555 104.2 ? 22 O6 ? B DG 5 ? B DG 5 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 32 ? B DG 32 ? 1_555 140.7 ? 23 O6 ? B DG 10 ? B DG 10 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 32 ? B DG 32 ? 1_555 61.0 ? 24 O6 ? B DG 11 ? B DG 11 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 32 ? B DG 32 ? 1_555 109.1 ? 25 O6 ? B DG 31 ? B DG 31 ? 1_555 NA ? D NA . ? B NA 102 ? 1_555 O6 ? B DG 32 ? B DG 32 ? 1_555 68.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-01-22 2 'Structure model' 1 1 2014-02-12 3 'Structure model' 1 2 2014-04-09 4 'Structure model' 1 3 2016-06-01 5 'Structure model' 1 4 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.value' 16 5 'Structure model' '_struct_conn.conn_type_id' 17 5 'Structure model' '_struct_conn.id' 18 5 'Structure model' '_struct_conn.pdbx_dist_value' 19 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 31 5 'Structure model' '_struct_ref_seq_dif.details' 32 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -6.6864 12.1735 8.9461 0.0678 0.1090 0.2194 0.0185 0.0772 0.0070 2.6899 1.3343 4.5929 -0.5615 -2.1681 2.0044 0.0703 -0.1813 0.1110 0.2612 -0.0575 0.1528 0.1967 0.0076 -0.1867 'X-RAY DIFFRACTION' 2 ? refined 9.9279 4.5232 6.6574 0.0422 0.1338 0.1777 0.0329 0.0217 0.0164 1.8952 2.5957 3.1618 1.5758 -1.6158 -1.7706 -0.1121 0.0755 0.0365 0.0587 -0.1552 -0.0057 0.1099 0.1480 0.3598 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 16 A 218 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 1 B 211 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 REFMAC refinement 5.5.0109 ? 2 XDS 'data reduction' . ? 3 XSCALE 'data scaling' . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B DUZ 8 ? ? "O3'" B DUZ 8 ? ? P B UPE 9 ? ? 127.71 119.70 8.01 1.20 Y 2 1 "O3'" B DUZ 8 ? ? P B UPE 9 ? ? "O5'" B UPE 9 ? ? 87.92 104.00 -16.08 1.90 Y 3 1 "O5'" B DA 13 ? ? "C5'" B DA 13 ? ? "C4'" B DA 13 ? ? 100.44 109.40 -8.96 0.80 N 4 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 99.24 108.00 -8.76 0.70 N 5 1 "C3'" B DUZ 14 ? ? "O3'" B DUZ 14 ? ? P B DUZ 15 ? ? 127.64 119.70 7.94 1.20 Y 6 1 "O3'" B DUZ 15 ? ? P B A2M 16 ? ? OP1 B A2M 16 ? ? 70.62 105.20 -34.58 2.20 Y 7 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 112.53 108.30 4.23 0.30 N 8 1 "O3'" B DC 18 ? ? P B A2M 19 ? ? "O5'" B A2M 19 ? ? 59.65 104.00 -44.35 1.90 Y 9 1 "O4'" B DA 25 ? ? "C1'" B DA 25 ? ? N9 B DA 25 ? ? 110.11 108.30 1.81 0.30 N 10 1 "O4'" B DG 26 ? ? "C1'" B DG 26 ? ? N9 B DG 26 ? ? 112.86 108.30 4.56 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 43 ? ? -92.78 -63.24 2 1 SER A 108 ? ? -76.96 29.60 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 17 ? CG ? A GLN 19 CG 2 1 Y 1 A GLN 17 ? CD ? A GLN 19 CD 3 1 Y 1 A GLN 17 ? OE1 ? A GLN 19 OE1 4 1 Y 1 A GLN 17 ? NE2 ? A GLN 19 NE2 5 1 Y 1 A ARG 40 ? CG ? A ARG 42 CG 6 1 Y 1 A ARG 40 ? CD ? A ARG 42 CD 7 1 Y 1 A ARG 40 ? NE ? A ARG 42 NE 8 1 Y 1 A ARG 40 ? CZ ? A ARG 42 CZ 9 1 Y 1 A ARG 40 ? NH1 ? A ARG 42 NH1 10 1 Y 1 A ARG 40 ? NH2 ? A ARG 42 NH2 11 1 Y 1 A LYS 41 ? CG ? A LYS 43 CG 12 1 Y 1 A LYS 41 ? CD ? A LYS 43 CD 13 1 Y 1 A LYS 41 ? CE ? A LYS 43 CE 14 1 Y 1 A LYS 41 ? NZ ? A LYS 43 NZ 15 1 Y 1 A GLU 42 ? CG ? A GLU 44 CG 16 1 Y 1 A GLU 42 ? CD ? A GLU 44 CD 17 1 Y 1 A GLU 42 ? OE1 ? A GLU 44 OE1 18 1 Y 1 A GLU 42 ? OE2 ? A GLU 44 OE2 19 1 Y 1 A ASN 45 ? CG ? A ASN 47 CG 20 1 Y 1 A ASN 45 ? OD1 ? A ASN 47 OD1 21 1 Y 1 A ASN 45 ? ND2 ? A ASN 47 ND2 22 1 Y 1 A LYS 46 ? CG ? A LYS 48 CG 23 1 Y 1 A LYS 46 ? CD ? A LYS 48 CD 24 1 Y 1 A LYS 46 ? CE ? A LYS 48 CE 25 1 Y 1 A LYS 46 ? NZ ? A LYS 48 NZ 26 1 Y 1 A ASN 61 ? CG ? A ASN 63 CG 27 1 Y 1 A ASN 61 ? OD1 ? A ASN 63 OD1 28 1 Y 1 A ASN 61 ? ND2 ? A ASN 63 ND2 29 1 Y 1 A ASN 63 ? CG ? A ASN 65 CG 30 1 Y 1 A ASN 63 ? OD1 ? A ASN 65 OD1 31 1 Y 1 A ASN 63 ? ND2 ? A ASN 65 ND2 32 1 Y 1 A LYS 66 ? CG ? A LYS 68 CG 33 1 Y 1 A LYS 66 ? CD ? A LYS 68 CD 34 1 Y 1 A LYS 66 ? CE ? A LYS 68 CE 35 1 Y 1 A LYS 66 ? NZ ? A LYS 68 NZ 36 1 Y 1 A LYS 70 ? CG ? A LYS 72 CG 37 1 Y 1 A LYS 70 ? CD ? A LYS 72 CD 38 1 Y 1 A LYS 70 ? CE ? A LYS 72 CE 39 1 Y 1 A LYS 70 ? NZ ? A LYS 72 NZ 40 1 Y 1 A GLN 75 ? CG ? A GLN 77 CG 41 1 Y 1 A GLN 75 ? CD ? A GLN 77 CD 42 1 Y 1 A GLN 75 ? OE1 ? A GLN 77 OE1 43 1 Y 1 A GLN 75 ? NE2 ? A GLN 77 NE2 44 1 Y 1 A PHE 78 ? CG ? A PHE 80 CG 45 1 Y 1 A PHE 78 ? CD1 ? A PHE 80 CD1 46 1 Y 1 A PHE 78 ? CD2 ? A PHE 80 CD2 47 1 Y 1 A PHE 78 ? CE1 ? A PHE 80 CE1 48 1 Y 1 A PHE 78 ? CE2 ? A PHE 80 CE2 49 1 Y 1 A PHE 78 ? CZ ? A PHE 80 CZ 50 1 Y 1 A GLU 80 ? CG ? A GLU 82 CG 51 1 Y 1 A GLU 80 ? CD ? A GLU 82 CD 52 1 Y 1 A GLU 80 ? OE1 ? A GLU 82 OE1 53 1 Y 1 A GLU 80 ? OE2 ? A GLU 82 OE2 54 1 Y 1 A GLU 81 ? CG ? A GLU 83 CG 55 1 Y 1 A GLU 81 ? CD ? A GLU 83 CD 56 1 Y 1 A GLU 81 ? OE1 ? A GLU 83 OE1 57 1 Y 1 A GLU 81 ? OE2 ? A GLU 83 OE2 58 1 Y 1 A LEU 84 ? CG ? A LEU 86 CG 59 1 Y 1 A LEU 84 ? CD1 ? A LEU 86 CD1 60 1 Y 1 A LEU 84 ? CD2 ? A LEU 86 CD2 61 1 Y 1 A ASN 103 ? CG ? A ASN 105 CG 62 1 Y 1 A ASN 103 ? OD1 ? A ASN 105 OD1 63 1 Y 1 A ASN 103 ? ND2 ? A ASN 105 ND2 64 1 Y 1 A GLU 106 ? CG ? A GLU 108 CG 65 1 Y 1 A GLU 106 ? CD ? A GLU 108 CD 66 1 Y 1 A GLU 106 ? OE1 ? A GLU 108 OE1 67 1 Y 1 A GLU 106 ? OE2 ? A GLU 108 OE2 68 1 Y 1 A GLU 109 ? CG ? A GLU 111 CG 69 1 Y 1 A GLU 109 ? CD ? A GLU 111 CD 70 1 Y 1 A GLU 109 ? OE1 ? A GLU 111 OE1 71 1 Y 1 A GLU 109 ? OE2 ? A GLU 111 OE2 72 1 Y 1 A ILE 136 ? CG1 ? A ILE 138 CG1 73 1 Y 1 A ILE 136 ? CG2 ? A ILE 138 CG2 74 1 Y 1 A ILE 136 ? CD1 ? A ILE 138 CD1 75 1 Y 1 A ASP 140 ? CG ? A ASP 142 CG 76 1 Y 1 A ASP 140 ? OD1 ? A ASP 142 OD1 77 1 Y 1 A ASP 140 ? OD2 ? A ASP 142 OD2 78 1 Y 1 A LYS 150 ? CG ? A LYS 152 CG 79 1 Y 1 A LYS 150 ? CD ? A LYS 152 CD 80 1 Y 1 A LYS 150 ? CE ? A LYS 152 CE 81 1 Y 1 A LYS 150 ? NZ ? A LYS 152 NZ 82 1 Y 1 A ARG 179 ? CG ? A ARG 181 CG 83 1 Y 1 A ARG 179 ? CD ? A ARG 181 CD 84 1 Y 1 A ARG 179 ? NE ? A ARG 181 NE 85 1 Y 1 A ARG 179 ? CZ ? A ARG 181 CZ 86 1 Y 1 A ARG 179 ? NH1 ? A ARG 181 NH1 87 1 Y 1 A ARG 179 ? NH2 ? A ARG 181 NH2 88 1 Y 1 A GLN 183 ? CG ? A GLN 185 CG 89 1 Y 1 A GLN 183 ? CD ? A GLN 185 CD 90 1 Y 1 A GLN 183 ? OE1 ? A GLN 185 OE1 91 1 Y 1 A GLN 183 ? NE2 ? A GLN 185 NE2 92 1 Y 1 A MET 184 ? CG ? A MET 186 CG 93 1 Y 1 A MET 184 ? SD ? A MET 186 SD 94 1 Y 1 A MET 184 ? CE ? A MET 186 CE 95 1 Y 1 B A2M 19 ? "C5'" ? B A2M 19 "C5'" 96 1 Y 1 B A2M 19 ? "C4'" ? B A2M 19 "C4'" 97 1 Y 1 B A2M 19 ? "O4'" ? B A2M 19 "O4'" 98 1 Y 1 B A2M 19 ? "C3'" ? B A2M 19 "C3'" 99 1 Y 1 B A2M 19 ? "O3'" ? B A2M 19 "O3'" 100 1 Y 1 B A2M 19 ? "C2'" ? B A2M 19 "C2'" 101 1 Y 1 B A2M 19 ? "O2'" ? B A2M 19 "O2'" 102 1 Y 1 B A2M 19 ? "C1'" ? B A2M 19 "C1'" 103 1 Y 1 B A2M 19 ? "CM'" ? B A2M 19 "CM'" 104 1 Y 1 B A2M 19 ? N9 ? B A2M 19 N9 105 1 Y 1 B A2M 19 ? C8 ? B A2M 19 C8 106 1 Y 1 B A2M 19 ? N7 ? B A2M 19 N7 107 1 Y 1 B A2M 19 ? C5 ? B A2M 19 C5 108 1 Y 1 B A2M 19 ? C6 ? B A2M 19 C6 109 1 Y 1 B A2M 19 ? N6 ? B A2M 19 N6 110 1 Y 1 B A2M 19 ? N1 ? B A2M 19 N1 111 1 Y 1 B A2M 19 ? C2 ? B A2M 19 C2 112 1 Y 1 B A2M 19 ? N3 ? B A2M 19 N3 113 1 Y 1 B A2M 19 ? C4 ? B A2M 19 C4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -1 ? A MET 1 2 1 Y 1 A ALA 0 ? A ALA 2 3 1 Y 1 A PRO 1 ? A PRO 3 4 1 Y 1 A VAL 2 ? A VAL 4 5 1 Y 1 A PRO 3 ? A PRO 5 6 1 Y 1 A PRO 4 ? A PRO 6 7 1 Y 1 A GLY 5 ? A GLY 7 8 1 Y 1 A GLU 6 ? A GLU 8 9 1 Y 1 A ASP 7 ? A ASP 9 10 1 Y 1 A SER 8 ? A SER 10 11 1 Y 1 A LYS 9 ? A LYS 11 12 1 Y 1 A ASP 10 ? A ASP 12 13 1 Y 1 A VAL 11 ? A VAL 13 14 1 Y 1 A ALA 12 ? A ALA 14 15 1 Y 1 A ALA 13 ? A ALA 15 16 1 Y 1 A PRO 14 ? A PRO 16 17 1 Y 1 A HIS 15 ? A HIS 17 18 1 Y 1 A ASN 48 ? A ASN 50 19 1 Y 1 A MET 49 ? A MET 51 20 1 Y 1 A CYS 50 ? A CYS 52 21 1 Y 1 A GLU 51 ? A GLU 53 22 1 Y 1 A SER 52 ? A SER 54 23 1 Y 1 A SER 53 ? A SER 55 24 1 Y 1 A LYS 54 ? A LYS 56 25 1 Y 1 A GLU 55 ? A GLU 57 26 1 Y 1 A ALA 56 ? A ALA 58 27 1 Y 1 A LEU 57 ? A LEU 59 28 1 Y 1 A ALA 58 ? A ALA 60 29 1 Y 1 A GLU 59 ? A GLU 61 30 1 Y 1 A ASN 60 ? A ASN 62 31 1 Y 1 A LYS 131 ? A LYS 133 32 1 Y 1 A ASN 132 ? A ASN 134 33 1 Y 1 A LEU 133 ? A LEU 135 34 1 Y 1 A ASP 134 ? A ASP 136 35 1 Y 1 A ALA 135 ? A ALA 137 36 1 Y 1 B OMC 20 ? B OMC 20 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2JU P P N N 1 2JU O1P O N N 2 2JU O2P O N N 3 2JU "O5'" O N N 4 2JU "C5'" C N N 5 2JU "C4'" C N R 6 2JU "C3'" C N S 7 2JU "C2'" C N N 8 2JU "C1'" C N R 9 2JU "O4'" O N N 10 2JU N1 N N N 11 2JU C6 C N N 12 2JU C5 C N N 13 2JU C4 C N N 14 2JU O4 O N N 15 2JU N3 N N N 16 2JU C2 C N N 17 2JU O2 O N N 18 2JU C5M C N N 19 2JU N22 N N N 20 2JU C23 C N N 21 2JU C24 C Y N 22 2JU C29 C Y N 23 2JU C30 C Y N 24 2JU C31 C Y N 25 2JU C32 C Y N 26 2JU C33 C Y N 27 2JU C28 C Y N 28 2JU C27 C Y N 29 2JU C26 C Y N 30 2JU C25 C Y N 31 2JU O21 O N N 32 2JU "O3'" O N N 33 2JU H2 H N N 34 2JU H3 H N N 35 2JU H4 H N N 36 2JU H5 H N N 37 2JU H6 H N N 38 2JU H7 H N N 39 2JU H8 H N N 40 2JU H9 H N N 41 2JU H10 H N N 42 2JU H11 H N N 43 2JU H12 H N N 44 2JU H13 H N N 45 2JU H14 H N N 46 2JU H15 H N N 47 2JU H16 H N N 48 2JU H17 H N N 49 2JU H18 H N N 50 2JU H19 H N N 51 2JU H20 H N N 52 2JU H21 H N N 53 2JU H22 H N N 54 2JU O3P O N N 55 2JU H1 H N N 56 A2M P P N N 57 A2M OP1 O N N 58 A2M OP3 O N N 59 A2M "O5'" O N N 60 A2M "C5'" C N N 61 A2M "C4'" C N R 62 A2M "O4'" O N N 63 A2M "C3'" C N R 64 A2M "O3'" O N N 65 A2M "C2'" C N R 66 A2M "O2'" O N N 67 A2M "C1'" C N R 68 A2M "CM'" C N N 69 A2M N9 N Y N 70 A2M C8 C Y N 71 A2M N7 N Y N 72 A2M C5 C Y N 73 A2M C6 C Y N 74 A2M N6 N N N 75 A2M N1 N Y N 76 A2M C2 C Y N 77 A2M N3 N Y N 78 A2M C4 C Y N 79 A2M HOP3 H N N 80 A2M "H5'" H N N 81 A2M "H5''" H N N 82 A2M "H4'" H N N 83 A2M "H3'" H N N 84 A2M "HO3'" H N N 85 A2M "H2'" H N N 86 A2M "H1'" H N N 87 A2M "HM'1" H N N 88 A2M "HM'2" H N N 89 A2M "HM'3" H N N 90 A2M H8 H N N 91 A2M H61 H N N 92 A2M H62 H N N 93 A2M H2 H N N 94 A2M OP2 O N N 95 A2M HOP2 H N N 96 ALA N N N N 97 ALA CA C N S 98 ALA C C N N 99 ALA O O N N 100 ALA CB C N N 101 ALA OXT O N N 102 ALA H H N N 103 ALA H2 H N N 104 ALA HA H N N 105 ALA HB1 H N N 106 ALA HB2 H N N 107 ALA HB3 H N N 108 ALA HXT H N N 109 ARG N N N N 110 ARG CA C N S 111 ARG C C N N 112 ARG O O N N 113 ARG CB C N N 114 ARG CG C N N 115 ARG CD C N N 116 ARG NE N N N 117 ARG CZ C N N 118 ARG NH1 N N N 119 ARG NH2 N N N 120 ARG OXT O N N 121 ARG H H N N 122 ARG H2 H N N 123 ARG HA H N N 124 ARG HB2 H N N 125 ARG HB3 H N N 126 ARG HG2 H N N 127 ARG HG3 H N N 128 ARG HD2 H N N 129 ARG HD3 H N N 130 ARG HE H N N 131 ARG HH11 H N N 132 ARG HH12 H N N 133 ARG HH21 H N N 134 ARG HH22 H N N 135 ARG HXT H N N 136 ASN N N N N 137 ASN CA C N S 138 ASN C C N N 139 ASN O O N N 140 ASN CB C N N 141 ASN CG C N N 142 ASN OD1 O N N 143 ASN ND2 N N N 144 ASN OXT O N N 145 ASN H H N N 146 ASN H2 H N N 147 ASN HA H N N 148 ASN HB2 H N N 149 ASN HB3 H N N 150 ASN HD21 H N N 151 ASN HD22 H N N 152 ASN HXT H N N 153 ASP N N N N 154 ASP CA C N S 155 ASP C C N N 156 ASP O O N N 157 ASP CB C N N 158 ASP CG C N N 159 ASP OD1 O N N 160 ASP OD2 O N N 161 ASP OXT O N N 162 ASP H H N N 163 ASP H2 H N N 164 ASP HA H N N 165 ASP HB2 H N N 166 ASP HB3 H N N 167 ASP HD2 H N N 168 ASP HXT H N N 169 CYS N N N N 170 CYS CA C N R 171 CYS C C N N 172 CYS O O N N 173 CYS CB C N N 174 CYS SG S N N 175 CYS OXT O N N 176 CYS H H N N 177 CYS H2 H N N 178 CYS HA H N N 179 CYS HB2 H N N 180 CYS HB3 H N N 181 CYS HG H N N 182 CYS HXT H N N 183 DA OP3 O N N 184 DA P P N N 185 DA OP1 O N N 186 DA OP2 O N N 187 DA "O5'" O N N 188 DA "C5'" C N N 189 DA "C4'" C N R 190 DA "O4'" O N N 191 DA "C3'" C N S 192 DA "O3'" O N N 193 DA "C2'" C N N 194 DA "C1'" C N R 195 DA N9 N Y N 196 DA C8 C Y N 197 DA N7 N Y N 198 DA C5 C Y N 199 DA C6 C Y N 200 DA N6 N N N 201 DA N1 N Y N 202 DA C2 C Y N 203 DA N3 N Y N 204 DA C4 C Y N 205 DA HOP3 H N N 206 DA HOP2 H N N 207 DA "H5'" H N N 208 DA "H5''" H N N 209 DA "H4'" H N N 210 DA "H3'" H N N 211 DA "HO3'" H N N 212 DA "H2'" H N N 213 DA "H2''" H N N 214 DA "H1'" H N N 215 DA H8 H N N 216 DA H61 H N N 217 DA H62 H N N 218 DA H2 H N N 219 DC OP3 O N N 220 DC P P N N 221 DC OP1 O N N 222 DC OP2 O N N 223 DC "O5'" O N N 224 DC "C5'" C N N 225 DC "C4'" C N R 226 DC "O4'" O N N 227 DC "C3'" C N S 228 DC "O3'" O N N 229 DC "C2'" C N N 230 DC "C1'" C N R 231 DC N1 N N N 232 DC C2 C N N 233 DC O2 O N N 234 DC N3 N N N 235 DC C4 C N N 236 DC N4 N N N 237 DC C5 C N N 238 DC C6 C N N 239 DC HOP3 H N N 240 DC HOP2 H N N 241 DC "H5'" H N N 242 DC "H5''" H N N 243 DC "H4'" H N N 244 DC "H3'" H N N 245 DC "HO3'" H N N 246 DC "H2'" H N N 247 DC "H2''" H N N 248 DC "H1'" H N N 249 DC H41 H N N 250 DC H42 H N N 251 DC H5 H N N 252 DC H6 H N N 253 DG OP3 O N N 254 DG P P N N 255 DG OP1 O N N 256 DG OP2 O N N 257 DG "O5'" O N N 258 DG "C5'" C N N 259 DG "C4'" C N R 260 DG "O4'" O N N 261 DG "C3'" C N S 262 DG "O3'" O N N 263 DG "C2'" C N N 264 DG "C1'" C N R 265 DG N9 N Y N 266 DG C8 C Y N 267 DG N7 N Y N 268 DG C5 C Y N 269 DG C6 C N N 270 DG O6 O N N 271 DG N1 N N N 272 DG C2 C N N 273 DG N2 N N N 274 DG N3 N N N 275 DG C4 C Y N 276 DG HOP3 H N N 277 DG HOP2 H N N 278 DG "H5'" H N N 279 DG "H5''" H N N 280 DG "H4'" H N N 281 DG "H3'" H N N 282 DG "HO3'" H N N 283 DG "H2'" H N N 284 DG "H2''" H N N 285 DG "H1'" H N N 286 DG H8 H N N 287 DG H1 H N N 288 DG H21 H N N 289 DG H22 H N N 290 DUZ P P N N 291 DUZ N1 N N N 292 DUZ C2 C N N 293 DUZ O2 O N N 294 DUZ N3 N N N 295 DUZ C4 C N N 296 DUZ O4 O N N 297 DUZ C5 C N N 298 DUZ C6 C N N 299 DUZ "C1'" C N R 300 DUZ "C2'" C N N 301 DUZ C21 C N N 302 DUZ O22 O N N 303 DUZ N23 N N N 304 DUZ C24 C N N 305 DUZ C25 C Y N 306 DUZ C26 C Y N 307 DUZ C27 C Y N 308 DUZ C28 C Y N 309 DUZ C29 C Y N 310 DUZ "C3'" C N S 311 DUZ "O3'" O N N 312 DUZ C30 C Y N 313 DUZ "C4'" C N R 314 DUZ "O4'" O N N 315 DUZ "C5'" C N N 316 DUZ "O5'" O N N 317 DUZ OP1 O N N 318 DUZ OP2 O N N 319 DUZ OP3 O N N 320 DUZ HN3 H N N 321 DUZ H6 H N N 322 DUZ "H1'" H N N 323 DUZ "H2'" H N N 324 DUZ "H2'A" H N N 325 DUZ HN23 H N N 326 DUZ H24 H N N 327 DUZ H24A H N N 328 DUZ H26 H N N 329 DUZ H27 H N N 330 DUZ H28 H N N 331 DUZ H29 H N N 332 DUZ "H3'" H N N 333 DUZ "HO3'" H N N 334 DUZ H30 H N N 335 DUZ "H4'" H N N 336 DUZ "H5'" H N N 337 DUZ "H5'A" H N N 338 DUZ HOP2 H N N 339 DUZ HOP3 H N N 340 GLN N N N N 341 GLN CA C N S 342 GLN C C N N 343 GLN O O N N 344 GLN CB C N N 345 GLN CG C N N 346 GLN CD C N N 347 GLN OE1 O N N 348 GLN NE2 N N N 349 GLN OXT O N N 350 GLN H H N N 351 GLN H2 H N N 352 GLN HA H N N 353 GLN HB2 H N N 354 GLN HB3 H N N 355 GLN HG2 H N N 356 GLN HG3 H N N 357 GLN HE21 H N N 358 GLN HE22 H N N 359 GLN HXT H N N 360 GLU N N N N 361 GLU CA C N S 362 GLU C C N N 363 GLU O O N N 364 GLU CB C N N 365 GLU CG C N N 366 GLU CD C N N 367 GLU OE1 O N N 368 GLU OE2 O N N 369 GLU OXT O N N 370 GLU H H N N 371 GLU H2 H N N 372 GLU HA H N N 373 GLU HB2 H N N 374 GLU HB3 H N N 375 GLU HG2 H N N 376 GLU HG3 H N N 377 GLU HE2 H N N 378 GLU HXT H N N 379 GLY N N N N 380 GLY CA C N N 381 GLY C C N N 382 GLY O O N N 383 GLY OXT O N N 384 GLY H H N N 385 GLY H2 H N N 386 GLY HA2 H N N 387 GLY HA3 H N N 388 GLY HXT H N N 389 HIS N N N N 390 HIS CA C N S 391 HIS C C N N 392 HIS O O N N 393 HIS CB C N N 394 HIS CG C Y N 395 HIS ND1 N Y N 396 HIS CD2 C Y N 397 HIS CE1 C Y N 398 HIS NE2 N Y N 399 HIS OXT O N N 400 HIS H H N N 401 HIS H2 H N N 402 HIS HA H N N 403 HIS HB2 H N N 404 HIS HB3 H N N 405 HIS HD1 H N N 406 HIS HD2 H N N 407 HIS HE1 H N N 408 HIS HE2 H N N 409 HIS HXT H N N 410 HOH O O N N 411 HOH H1 H N N 412 HOH H2 H N N 413 ILE N N N N 414 ILE CA C N S 415 ILE C C N N 416 ILE O O N N 417 ILE CB C N S 418 ILE CG1 C N N 419 ILE CG2 C N N 420 ILE CD1 C N N 421 ILE OXT O N N 422 ILE H H N N 423 ILE H2 H N N 424 ILE HA H N N 425 ILE HB H N N 426 ILE HG12 H N N 427 ILE HG13 H N N 428 ILE HG21 H N N 429 ILE HG22 H N N 430 ILE HG23 H N N 431 ILE HD11 H N N 432 ILE HD12 H N N 433 ILE HD13 H N N 434 ILE HXT H N N 435 LEU N N N N 436 LEU CA C N S 437 LEU C C N N 438 LEU O O N N 439 LEU CB C N N 440 LEU CG C N N 441 LEU CD1 C N N 442 LEU CD2 C N N 443 LEU OXT O N N 444 LEU H H N N 445 LEU H2 H N N 446 LEU HA H N N 447 LEU HB2 H N N 448 LEU HB3 H N N 449 LEU HG H N N 450 LEU HD11 H N N 451 LEU HD12 H N N 452 LEU HD13 H N N 453 LEU HD21 H N N 454 LEU HD22 H N N 455 LEU HD23 H N N 456 LEU HXT H N N 457 LYS N N N N 458 LYS CA C N S 459 LYS C C N N 460 LYS O O N N 461 LYS CB C N N 462 LYS CG C N N 463 LYS CD C N N 464 LYS CE C N N 465 LYS NZ N N N 466 LYS OXT O N N 467 LYS H H N N 468 LYS H2 H N N 469 LYS HA H N N 470 LYS HB2 H N N 471 LYS HB3 H N N 472 LYS HG2 H N N 473 LYS HG3 H N N 474 LYS HD2 H N N 475 LYS HD3 H N N 476 LYS HE2 H N N 477 LYS HE3 H N N 478 LYS HZ1 H N N 479 LYS HZ2 H N N 480 LYS HZ3 H N N 481 LYS HXT H N N 482 MET N N N N 483 MET CA C N S 484 MET C C N N 485 MET O O N N 486 MET CB C N N 487 MET CG C N N 488 MET SD S N N 489 MET CE C N N 490 MET OXT O N N 491 MET H H N N 492 MET H2 H N N 493 MET HA H N N 494 MET HB2 H N N 495 MET HB3 H N N 496 MET HG2 H N N 497 MET HG3 H N N 498 MET HE1 H N N 499 MET HE2 H N N 500 MET HE3 H N N 501 MET HXT H N N 502 NA NA NA N N 503 OMC N1 N N N 504 OMC C2 C N N 505 OMC N3 N N N 506 OMC C4 C N N 507 OMC C5 C N N 508 OMC C6 C N N 509 OMC O2 O N N 510 OMC N4 N N N 511 OMC "C1'" C N R 512 OMC "C2'" C N R 513 OMC "O2'" O N N 514 OMC CM2 C N N 515 OMC "C3'" C N R 516 OMC "C4'" C N R 517 OMC "O4'" O N N 518 OMC "O3'" O N N 519 OMC "C5'" C N N 520 OMC "O5'" O N N 521 OMC P P N N 522 OMC OP1 O N N 523 OMC OP2 O N N 524 OMC OP3 O N N 525 OMC H5 H N N 526 OMC H6 H N N 527 OMC HN41 H N N 528 OMC HN42 H N N 529 OMC "H1'" H N N 530 OMC "H2'" H N N 531 OMC HM21 H N N 532 OMC HM22 H N N 533 OMC HM23 H N N 534 OMC "H3'" H N N 535 OMC "H4'" H N N 536 OMC "HO3'" H N N 537 OMC "H5'" H N N 538 OMC "H5''" H N N 539 OMC HOP2 H N N 540 OMC HOP3 H N N 541 OMG P P N N 542 OMG OP1 O N N 543 OMG OP2 O N N 544 OMG OP3 O N N 545 OMG "O5'" O N N 546 OMG "C5'" C N N 547 OMG "C4'" C N R 548 OMG "O4'" O N N 549 OMG "C3'" C N R 550 OMG "O3'" O N N 551 OMG "C2'" C N R 552 OMG "O2'" O N N 553 OMG CM2 C N N 554 OMG "C1'" C N R 555 OMG N9 N Y N 556 OMG C8 C Y N 557 OMG N7 N Y N 558 OMG C5 C Y N 559 OMG C6 C N N 560 OMG O6 O N N 561 OMG N1 N N N 562 OMG C2 C N N 563 OMG N2 N N N 564 OMG N3 N N N 565 OMG C4 C Y N 566 OMG HOP2 H N N 567 OMG HOP3 H N N 568 OMG "H5'" H N N 569 OMG "H5''" H N N 570 OMG "H4'" H N N 571 OMG "H3'" H N N 572 OMG "HO3'" H N N 573 OMG "H2'" H N N 574 OMG HM21 H N N 575 OMG HM22 H N N 576 OMG HM23 H N N 577 OMG "H1'" H N N 578 OMG H8 H N N 579 OMG HN1 H N N 580 OMG HN21 H N N 581 OMG HN22 H N N 582 PHE N N N N 583 PHE CA C N S 584 PHE C C N N 585 PHE O O N N 586 PHE CB C N N 587 PHE CG C Y N 588 PHE CD1 C Y N 589 PHE CD2 C Y N 590 PHE CE1 C Y N 591 PHE CE2 C Y N 592 PHE CZ C Y N 593 PHE OXT O N N 594 PHE H H N N 595 PHE H2 H N N 596 PHE HA H N N 597 PHE HB2 H N N 598 PHE HB3 H N N 599 PHE HD1 H N N 600 PHE HD2 H N N 601 PHE HE1 H N N 602 PHE HE2 H N N 603 PHE HZ H N N 604 PHE HXT H N N 605 PRO N N N N 606 PRO CA C N S 607 PRO C C N N 608 PRO O O N N 609 PRO CB C N N 610 PRO CG C N N 611 PRO CD C N N 612 PRO OXT O N N 613 PRO H H N N 614 PRO HA H N N 615 PRO HB2 H N N 616 PRO HB3 H N N 617 PRO HG2 H N N 618 PRO HG3 H N N 619 PRO HD2 H N N 620 PRO HD3 H N N 621 PRO HXT H N N 622 SER N N N N 623 SER CA C N S 624 SER C C N N 625 SER O O N N 626 SER CB C N N 627 SER OG O N N 628 SER OXT O N N 629 SER H H N N 630 SER H2 H N N 631 SER HA H N N 632 SER HB2 H N N 633 SER HB3 H N N 634 SER HG H N N 635 SER HXT H N N 636 THR N N N N 637 THR CA C N S 638 THR C C N N 639 THR O O N N 640 THR CB C N R 641 THR OG1 O N N 642 THR CG2 C N N 643 THR OXT O N N 644 THR H H N N 645 THR H2 H N N 646 THR HA H N N 647 THR HB H N N 648 THR HG1 H N N 649 THR HG21 H N N 650 THR HG22 H N N 651 THR HG23 H N N 652 THR HXT H N N 653 TRP N N N N 654 TRP CA C N S 655 TRP C C N N 656 TRP O O N N 657 TRP CB C N N 658 TRP CG C Y N 659 TRP CD1 C Y N 660 TRP CD2 C Y N 661 TRP NE1 N Y N 662 TRP CE2 C Y N 663 TRP CE3 C Y N 664 TRP CZ2 C Y N 665 TRP CZ3 C Y N 666 TRP CH2 C Y N 667 TRP OXT O N N 668 TRP H H N N 669 TRP H2 H N N 670 TRP HA H N N 671 TRP HB2 H N N 672 TRP HB3 H N N 673 TRP HD1 H N N 674 TRP HE1 H N N 675 TRP HE3 H N N 676 TRP HZ2 H N N 677 TRP HZ3 H N N 678 TRP HH2 H N N 679 TRP HXT H N N 680 TYR N N N N 681 TYR CA C N S 682 TYR C C N N 683 TYR O O N N 684 TYR CB C N N 685 TYR CG C Y N 686 TYR CD1 C Y N 687 TYR CD2 C Y N 688 TYR CE1 C Y N 689 TYR CE2 C Y N 690 TYR CZ C Y N 691 TYR OH O N N 692 TYR OXT O N N 693 TYR H H N N 694 TYR H2 H N N 695 TYR HA H N N 696 TYR HB2 H N N 697 TYR HB3 H N N 698 TYR HD1 H N N 699 TYR HD2 H N N 700 TYR HE1 H N N 701 TYR HE2 H N N 702 TYR HH H N N 703 TYR HXT H N N 704 UPE P P N N 705 UPE N1 N N N 706 UPE C2 C N N 707 UPE O2 O N N 708 UPE N3 N N N 709 UPE C4 C N N 710 UPE O4 O N N 711 UPE C5 C N N 712 UPE C6 C N N 713 UPE "C1'" C N R 714 UPE "C2'" C N N 715 UPE C21 C N N 716 UPE O22 O N N 717 UPE N23 N N N 718 UPE C24 C N N 719 UPE C25 C N N 720 UPE C26 C Y N 721 UPE C27 C Y N 722 UPE C28 C Y N 723 UPE C29 C Y N 724 UPE "C3'" C N S 725 UPE "O3'" O N N 726 UPE C30 C Y N 727 UPE C31 C Y N 728 UPE "C4'" C N R 729 UPE "O4'" O N N 730 UPE "C5'" C N N 731 UPE "O5'" O N N 732 UPE OP1 O N N 733 UPE OP2 O N N 734 UPE OP3 O N N 735 UPE HN3 H N N 736 UPE H6 H N N 737 UPE "H1'" H N N 738 UPE "H2'" H N N 739 UPE "H2'A" H N N 740 UPE HN23 H N N 741 UPE H24 H N N 742 UPE H24A H N N 743 UPE H25 H N N 744 UPE H25A H N N 745 UPE H27 H N N 746 UPE H28 H N N 747 UPE H29 H N N 748 UPE "H3'" H N N 749 UPE "HO3'" H N N 750 UPE H30 H N N 751 UPE H31 H N N 752 UPE "H4'" H N N 753 UPE "H5'" H N N 754 UPE "H5'A" H N N 755 UPE HOP2 H N N 756 UPE HOP3 H N N 757 VAL N N N N 758 VAL CA C N S 759 VAL C C N N 760 VAL O O N N 761 VAL CB C N N 762 VAL CG1 C N N 763 VAL CG2 C N N 764 VAL OXT O N N 765 VAL H H N N 766 VAL H2 H N N 767 VAL HA H N N 768 VAL HB H N N 769 VAL HG11 H N N 770 VAL HG12 H N N 771 VAL HG13 H N N 772 VAL HG21 H N N 773 VAL HG22 H N N 774 VAL HG23 H N N 775 VAL HXT H N N 776 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2JU O2 C2 doub N N 1 2JU C26 C27 doub Y N 2 2JU C26 C25 sing Y N 3 2JU N3 C2 sing N N 4 2JU N3 C4 sing N N 5 2JU C2 N1 sing N N 6 2JU C27 C28 sing Y N 7 2JU O4 C4 doub N N 8 2JU "C2'" "C1'" sing N N 9 2JU "C2'" "C3'" sing N N 10 2JU C4 C5 sing N N 11 2JU C25 C24 doub Y N 12 2JU N1 "C1'" sing N N 13 2JU N1 C6 sing N N 14 2JU "C1'" "O4'" sing N N 15 2JU C5 C6 doub N N 16 2JU C5 C5M sing N N 17 2JU "O3'" "C3'" sing N N 18 2JU "C3'" "C4'" sing N N 19 2JU C28 C33 doub Y N 20 2JU C28 C29 sing Y N 21 2JU C33 C32 sing Y N 22 2JU C24 C29 sing Y N 23 2JU C24 C23 sing N N 24 2JU C5M N22 sing N N 25 2JU C5M O21 doub N N 26 2JU N22 C23 sing N N 27 2JU C29 C30 doub Y N 28 2JU "O4'" "C4'" sing N N 29 2JU "C4'" "C5'" sing N N 30 2JU "O5'" "C5'" sing N N 31 2JU "O5'" P sing N N 32 2JU C32 C31 doub Y N 33 2JU C30 C31 sing Y N 34 2JU O2P P sing N N 35 2JU P O1P doub N N 36 2JU O2P H2 sing N N 37 2JU "C5'" H3 sing N N 38 2JU "C5'" H4 sing N N 39 2JU "C4'" H5 sing N N 40 2JU "C3'" H6 sing N N 41 2JU "C2'" H7 sing N N 42 2JU "C2'" H8 sing N N 43 2JU "C1'" H9 sing N N 44 2JU C6 H10 sing N N 45 2JU N3 H11 sing N N 46 2JU N22 H12 sing N N 47 2JU C23 H13 sing N N 48 2JU C23 H14 sing N N 49 2JU C30 H15 sing N N 50 2JU C31 H16 sing N N 51 2JU C32 H17 sing N N 52 2JU C33 H18 sing N N 53 2JU C27 H19 sing N N 54 2JU C26 H20 sing N N 55 2JU C25 H21 sing N N 56 2JU "O3'" H22 sing N N 57 2JU P O3P sing N N 58 2JU O3P H1 sing N N 59 A2M P OP1 doub N N 60 A2M P OP3 sing N N 61 A2M P "O5'" sing N N 62 A2M OP3 HOP3 sing N N 63 A2M "O5'" "C5'" sing N N 64 A2M "C5'" "C4'" sing N N 65 A2M "C5'" "H5'" sing N N 66 A2M "C5'" "H5''" sing N N 67 A2M "C4'" "O4'" sing N N 68 A2M "C4'" "C3'" sing N N 69 A2M "C4'" "H4'" sing N N 70 A2M "O4'" "C1'" sing N N 71 A2M "C3'" "O3'" sing N N 72 A2M "C3'" "C2'" sing N N 73 A2M "C3'" "H3'" sing N N 74 A2M "O3'" "HO3'" sing N N 75 A2M "C2'" "O2'" sing N N 76 A2M "C2'" "C1'" sing N N 77 A2M "C2'" "H2'" sing N N 78 A2M "O2'" "CM'" sing N N 79 A2M "C1'" N9 sing N N 80 A2M "C1'" "H1'" sing N N 81 A2M "CM'" "HM'1" sing N N 82 A2M "CM'" "HM'2" sing N N 83 A2M "CM'" "HM'3" sing N N 84 A2M N9 C8 sing Y N 85 A2M N9 C4 sing Y N 86 A2M C8 N7 doub Y N 87 A2M C8 H8 sing N N 88 A2M N7 C5 sing Y N 89 A2M C5 C6 sing Y N 90 A2M C5 C4 doub Y N 91 A2M C6 N6 sing N N 92 A2M C6 N1 doub Y N 93 A2M N6 H61 sing N N 94 A2M N6 H62 sing N N 95 A2M N1 C2 sing Y N 96 A2M C2 N3 doub Y N 97 A2M C2 H2 sing N N 98 A2M N3 C4 sing Y N 99 A2M P OP2 sing N N 100 A2M OP2 HOP2 sing N N 101 ALA N CA sing N N 102 ALA N H sing N N 103 ALA N H2 sing N N 104 ALA CA C sing N N 105 ALA CA CB sing N N 106 ALA CA HA sing N N 107 ALA C O doub N N 108 ALA C OXT sing N N 109 ALA CB HB1 sing N N 110 ALA CB HB2 sing N N 111 ALA CB HB3 sing N N 112 ALA OXT HXT sing N N 113 ARG N CA sing N N 114 ARG N H sing N N 115 ARG N H2 sing N N 116 ARG CA C sing N N 117 ARG CA CB sing N N 118 ARG CA HA sing N N 119 ARG C O doub N N 120 ARG C OXT sing N N 121 ARG CB CG sing N N 122 ARG CB HB2 sing N N 123 ARG CB HB3 sing N N 124 ARG CG CD sing N N 125 ARG CG HG2 sing N N 126 ARG CG HG3 sing N N 127 ARG CD NE sing N N 128 ARG CD HD2 sing N N 129 ARG CD HD3 sing N N 130 ARG NE CZ sing N N 131 ARG NE HE sing N N 132 ARG CZ NH1 sing N N 133 ARG CZ NH2 doub N N 134 ARG NH1 HH11 sing N N 135 ARG NH1 HH12 sing N N 136 ARG NH2 HH21 sing N N 137 ARG NH2 HH22 sing N N 138 ARG OXT HXT sing N N 139 ASN N CA sing N N 140 ASN N H sing N N 141 ASN N H2 sing N N 142 ASN CA C sing N N 143 ASN CA CB sing N N 144 ASN CA HA sing N N 145 ASN C O doub N N 146 ASN C OXT sing N N 147 ASN CB CG sing N N 148 ASN CB HB2 sing N N 149 ASN CB HB3 sing N N 150 ASN CG OD1 doub N N 151 ASN CG ND2 sing N N 152 ASN ND2 HD21 sing N N 153 ASN ND2 HD22 sing N N 154 ASN OXT HXT sing N N 155 ASP N CA sing N N 156 ASP N H sing N N 157 ASP N H2 sing N N 158 ASP CA C sing N N 159 ASP CA CB sing N N 160 ASP CA HA sing N N 161 ASP C O doub N N 162 ASP C OXT sing N N 163 ASP CB CG sing N N 164 ASP CB HB2 sing N N 165 ASP CB HB3 sing N N 166 ASP CG OD1 doub N N 167 ASP CG OD2 sing N N 168 ASP OD2 HD2 sing N N 169 ASP OXT HXT sing N N 170 CYS N CA sing N N 171 CYS N H sing N N 172 CYS N H2 sing N N 173 CYS CA C sing N N 174 CYS CA CB sing N N 175 CYS CA HA sing N N 176 CYS C O doub N N 177 CYS C OXT sing N N 178 CYS CB SG sing N N 179 CYS CB HB2 sing N N 180 CYS CB HB3 sing N N 181 CYS SG HG sing N N 182 CYS OXT HXT sing N N 183 DA OP3 P sing N N 184 DA OP3 HOP3 sing N N 185 DA P OP1 doub N N 186 DA P OP2 sing N N 187 DA P "O5'" sing N N 188 DA OP2 HOP2 sing N N 189 DA "O5'" "C5'" sing N N 190 DA "C5'" "C4'" sing N N 191 DA "C5'" "H5'" sing N N 192 DA "C5'" "H5''" sing N N 193 DA "C4'" "O4'" sing N N 194 DA "C4'" "C3'" sing N N 195 DA "C4'" "H4'" sing N N 196 DA "O4'" "C1'" sing N N 197 DA "C3'" "O3'" sing N N 198 DA "C3'" "C2'" sing N N 199 DA "C3'" "H3'" sing N N 200 DA "O3'" "HO3'" sing N N 201 DA "C2'" "C1'" sing N N 202 DA "C2'" "H2'" sing N N 203 DA "C2'" "H2''" sing N N 204 DA "C1'" N9 sing N N 205 DA "C1'" "H1'" sing N N 206 DA N9 C8 sing Y N 207 DA N9 C4 sing Y N 208 DA C8 N7 doub Y N 209 DA C8 H8 sing N N 210 DA N7 C5 sing Y N 211 DA C5 C6 sing Y N 212 DA C5 C4 doub Y N 213 DA C6 N6 sing N N 214 DA C6 N1 doub Y N 215 DA N6 H61 sing N N 216 DA N6 H62 sing N N 217 DA N1 C2 sing Y N 218 DA C2 N3 doub Y N 219 DA C2 H2 sing N N 220 DA N3 C4 sing Y N 221 DC OP3 P sing N N 222 DC OP3 HOP3 sing N N 223 DC P OP1 doub N N 224 DC P OP2 sing N N 225 DC P "O5'" sing N N 226 DC OP2 HOP2 sing N N 227 DC "O5'" "C5'" sing N N 228 DC "C5'" "C4'" sing N N 229 DC "C5'" "H5'" sing N N 230 DC "C5'" "H5''" sing N N 231 DC "C4'" "O4'" sing N N 232 DC "C4'" "C3'" sing N N 233 DC "C4'" "H4'" sing N N 234 DC "O4'" "C1'" sing N N 235 DC "C3'" "O3'" sing N N 236 DC "C3'" "C2'" sing N N 237 DC "C3'" "H3'" sing N N 238 DC "O3'" "HO3'" sing N N 239 DC "C2'" "C1'" sing N N 240 DC "C2'" "H2'" sing N N 241 DC "C2'" "H2''" sing N N 242 DC "C1'" N1 sing N N 243 DC "C1'" "H1'" sing N N 244 DC N1 C2 sing N N 245 DC N1 C6 sing N N 246 DC C2 O2 doub N N 247 DC C2 N3 sing N N 248 DC N3 C4 doub N N 249 DC C4 N4 sing N N 250 DC C4 C5 sing N N 251 DC N4 H41 sing N N 252 DC N4 H42 sing N N 253 DC C5 C6 doub N N 254 DC C5 H5 sing N N 255 DC C6 H6 sing N N 256 DG OP3 P sing N N 257 DG OP3 HOP3 sing N N 258 DG P OP1 doub N N 259 DG P OP2 sing N N 260 DG P "O5'" sing N N 261 DG OP2 HOP2 sing N N 262 DG "O5'" "C5'" sing N N 263 DG "C5'" "C4'" sing N N 264 DG "C5'" "H5'" sing N N 265 DG "C5'" "H5''" sing N N 266 DG "C4'" "O4'" sing N N 267 DG "C4'" "C3'" sing N N 268 DG "C4'" "H4'" sing N N 269 DG "O4'" "C1'" sing N N 270 DG "C3'" "O3'" sing N N 271 DG "C3'" "C2'" sing N N 272 DG "C3'" "H3'" sing N N 273 DG "O3'" "HO3'" sing N N 274 DG "C2'" "C1'" sing N N 275 DG "C2'" "H2'" sing N N 276 DG "C2'" "H2''" sing N N 277 DG "C1'" N9 sing N N 278 DG "C1'" "H1'" sing N N 279 DG N9 C8 sing Y N 280 DG N9 C4 sing Y N 281 DG C8 N7 doub Y N 282 DG C8 H8 sing N N 283 DG N7 C5 sing Y N 284 DG C5 C6 sing N N 285 DG C5 C4 doub Y N 286 DG C6 O6 doub N N 287 DG C6 N1 sing N N 288 DG N1 C2 sing N N 289 DG N1 H1 sing N N 290 DG C2 N2 sing N N 291 DG C2 N3 doub N N 292 DG N2 H21 sing N N 293 DG N2 H22 sing N N 294 DG N3 C4 sing N N 295 DUZ "O5'" P sing N N 296 DUZ OP1 P doub N N 297 DUZ P OP2 sing N N 298 DUZ P OP3 sing N N 299 DUZ C2 N1 sing N N 300 DUZ "C1'" N1 sing N N 301 DUZ N1 C6 sing N N 302 DUZ O2 C2 doub N N 303 DUZ C2 N3 sing N N 304 DUZ N3 C4 sing N N 305 DUZ N3 HN3 sing N N 306 DUZ C4 O4 doub N N 307 DUZ C4 C5 sing N N 308 DUZ C6 C5 doub N N 309 DUZ C5 C21 sing N N 310 DUZ C6 H6 sing N N 311 DUZ "C1'" "C2'" sing N N 312 DUZ "C1'" "O4'" sing N N 313 DUZ "C1'" "H1'" sing N N 314 DUZ "C2'" "C3'" sing N N 315 DUZ "C2'" "H2'" sing N N 316 DUZ "C2'" "H2'A" sing N N 317 DUZ C21 N23 sing N N 318 DUZ C21 O22 doub N N 319 DUZ N23 C24 sing N N 320 DUZ N23 HN23 sing N N 321 DUZ C24 C25 sing N N 322 DUZ C24 H24 sing N N 323 DUZ C24 H24A sing N N 324 DUZ C30 C25 doub Y N 325 DUZ C25 C26 sing Y N 326 DUZ C26 C27 doub Y N 327 DUZ C26 H26 sing N N 328 DUZ C28 C27 sing Y N 329 DUZ C27 H27 sing N N 330 DUZ C29 C28 doub Y N 331 DUZ C28 H28 sing N N 332 DUZ C30 C29 sing Y N 333 DUZ C29 H29 sing N N 334 DUZ "O3'" "C3'" sing N N 335 DUZ "C3'" "C4'" sing N N 336 DUZ "C3'" "H3'" sing N N 337 DUZ "O3'" "HO3'" sing N N 338 DUZ C30 H30 sing N N 339 DUZ "O4'" "C4'" sing N N 340 DUZ "C4'" "C5'" sing N N 341 DUZ "C4'" "H4'" sing N N 342 DUZ "C5'" "O5'" sing N N 343 DUZ "C5'" "H5'" sing N N 344 DUZ "C5'" "H5'A" sing N N 345 DUZ OP2 HOP2 sing N N 346 DUZ OP3 HOP3 sing N N 347 GLN N CA sing N N 348 GLN N H sing N N 349 GLN N H2 sing N N 350 GLN CA C sing N N 351 GLN CA CB sing N N 352 GLN CA HA sing N N 353 GLN C O doub N N 354 GLN C OXT sing N N 355 GLN CB CG sing N N 356 GLN CB HB2 sing N N 357 GLN CB HB3 sing N N 358 GLN CG CD sing N N 359 GLN CG HG2 sing N N 360 GLN CG HG3 sing N N 361 GLN CD OE1 doub N N 362 GLN CD NE2 sing N N 363 GLN NE2 HE21 sing N N 364 GLN NE2 HE22 sing N N 365 GLN OXT HXT sing N N 366 GLU N CA sing N N 367 GLU N H sing N N 368 GLU N H2 sing N N 369 GLU CA C sing N N 370 GLU CA CB sing N N 371 GLU CA HA sing N N 372 GLU C O doub N N 373 GLU C OXT sing N N 374 GLU CB CG sing N N 375 GLU CB HB2 sing N N 376 GLU CB HB3 sing N N 377 GLU CG CD sing N N 378 GLU CG HG2 sing N N 379 GLU CG HG3 sing N N 380 GLU CD OE1 doub N N 381 GLU CD OE2 sing N N 382 GLU OE2 HE2 sing N N 383 GLU OXT HXT sing N N 384 GLY N CA sing N N 385 GLY N H sing N N 386 GLY N H2 sing N N 387 GLY CA C sing N N 388 GLY CA HA2 sing N N 389 GLY CA HA3 sing N N 390 GLY C O doub N N 391 GLY C OXT sing N N 392 GLY OXT HXT sing N N 393 HIS N CA sing N N 394 HIS N H sing N N 395 HIS N H2 sing N N 396 HIS CA C sing N N 397 HIS CA CB sing N N 398 HIS CA HA sing N N 399 HIS C O doub N N 400 HIS C OXT sing N N 401 HIS CB CG sing N N 402 HIS CB HB2 sing N N 403 HIS CB HB3 sing N N 404 HIS CG ND1 sing Y N 405 HIS CG CD2 doub Y N 406 HIS ND1 CE1 doub Y N 407 HIS ND1 HD1 sing N N 408 HIS CD2 NE2 sing Y N 409 HIS CD2 HD2 sing N N 410 HIS CE1 NE2 sing Y N 411 HIS CE1 HE1 sing N N 412 HIS NE2 HE2 sing N N 413 HIS OXT HXT sing N N 414 HOH O H1 sing N N 415 HOH O H2 sing N N 416 ILE N CA sing N N 417 ILE N H sing N N 418 ILE N H2 sing N N 419 ILE CA C sing N N 420 ILE CA CB sing N N 421 ILE CA HA sing N N 422 ILE C O doub N N 423 ILE C OXT sing N N 424 ILE CB CG1 sing N N 425 ILE CB CG2 sing N N 426 ILE CB HB sing N N 427 ILE CG1 CD1 sing N N 428 ILE CG1 HG12 sing N N 429 ILE CG1 HG13 sing N N 430 ILE CG2 HG21 sing N N 431 ILE CG2 HG22 sing N N 432 ILE CG2 HG23 sing N N 433 ILE CD1 HD11 sing N N 434 ILE CD1 HD12 sing N N 435 ILE CD1 HD13 sing N N 436 ILE OXT HXT sing N N 437 LEU N CA sing N N 438 LEU N H sing N N 439 LEU N H2 sing N N 440 LEU CA C sing N N 441 LEU CA CB sing N N 442 LEU CA HA sing N N 443 LEU C O doub N N 444 LEU C OXT sing N N 445 LEU CB CG sing N N 446 LEU CB HB2 sing N N 447 LEU CB HB3 sing N N 448 LEU CG CD1 sing N N 449 LEU CG CD2 sing N N 450 LEU CG HG sing N N 451 LEU CD1 HD11 sing N N 452 LEU CD1 HD12 sing N N 453 LEU CD1 HD13 sing N N 454 LEU CD2 HD21 sing N N 455 LEU CD2 HD22 sing N N 456 LEU CD2 HD23 sing N N 457 LEU OXT HXT sing N N 458 LYS N CA sing N N 459 LYS N H sing N N 460 LYS N H2 sing N N 461 LYS CA C sing N N 462 LYS CA CB sing N N 463 LYS CA HA sing N N 464 LYS C O doub N N 465 LYS C OXT sing N N 466 LYS CB CG sing N N 467 LYS CB HB2 sing N N 468 LYS CB HB3 sing N N 469 LYS CG CD sing N N 470 LYS CG HG2 sing N N 471 LYS CG HG3 sing N N 472 LYS CD CE sing N N 473 LYS CD HD2 sing N N 474 LYS CD HD3 sing N N 475 LYS CE NZ sing N N 476 LYS CE HE2 sing N N 477 LYS CE HE3 sing N N 478 LYS NZ HZ1 sing N N 479 LYS NZ HZ2 sing N N 480 LYS NZ HZ3 sing N N 481 LYS OXT HXT sing N N 482 MET N CA sing N N 483 MET N H sing N N 484 MET N H2 sing N N 485 MET CA C sing N N 486 MET CA CB sing N N 487 MET CA HA sing N N 488 MET C O doub N N 489 MET C OXT sing N N 490 MET CB CG sing N N 491 MET CB HB2 sing N N 492 MET CB HB3 sing N N 493 MET CG SD sing N N 494 MET CG HG2 sing N N 495 MET CG HG3 sing N N 496 MET SD CE sing N N 497 MET CE HE1 sing N N 498 MET CE HE2 sing N N 499 MET CE HE3 sing N N 500 MET OXT HXT sing N N 501 OMC N1 C2 sing N N 502 OMC N1 C6 sing N N 503 OMC N1 "C1'" sing N N 504 OMC C2 N3 sing N N 505 OMC C2 O2 doub N N 506 OMC N3 C4 doub N N 507 OMC C4 C5 sing N N 508 OMC C4 N4 sing N N 509 OMC C5 C6 doub N N 510 OMC C5 H5 sing N N 511 OMC C6 H6 sing N N 512 OMC N4 HN41 sing N N 513 OMC N4 HN42 sing N N 514 OMC "C1'" "C2'" sing N N 515 OMC "C1'" "O4'" sing N N 516 OMC "C1'" "H1'" sing N N 517 OMC "C2'" "O2'" sing N N 518 OMC "C2'" "C3'" sing N N 519 OMC "C2'" "H2'" sing N N 520 OMC "O2'" CM2 sing N N 521 OMC CM2 HM21 sing N N 522 OMC CM2 HM22 sing N N 523 OMC CM2 HM23 sing N N 524 OMC "C3'" "C4'" sing N N 525 OMC "C3'" "O3'" sing N N 526 OMC "C3'" "H3'" sing N N 527 OMC "C4'" "O4'" sing N N 528 OMC "C4'" "C5'" sing N N 529 OMC "C4'" "H4'" sing N N 530 OMC "O3'" "HO3'" sing N N 531 OMC "C5'" "O5'" sing N N 532 OMC "C5'" "H5'" sing N N 533 OMC "C5'" "H5''" sing N N 534 OMC "O5'" P sing N N 535 OMC P OP1 doub N N 536 OMC P OP2 sing N N 537 OMC P OP3 sing N N 538 OMC OP2 HOP2 sing N N 539 OMC OP3 HOP3 sing N N 540 OMG P OP1 doub N N 541 OMG P OP2 sing N N 542 OMG P OP3 sing N N 543 OMG P "O5'" sing N N 544 OMG OP2 HOP2 sing N N 545 OMG OP3 HOP3 sing N N 546 OMG "O5'" "C5'" sing N N 547 OMG "C5'" "C4'" sing N N 548 OMG "C5'" "H5'" sing N N 549 OMG "C5'" "H5''" sing N N 550 OMG "C4'" "O4'" sing N N 551 OMG "C4'" "C3'" sing N N 552 OMG "C4'" "H4'" sing N N 553 OMG "O4'" "C1'" sing N N 554 OMG "C3'" "O3'" sing N N 555 OMG "C3'" "C2'" sing N N 556 OMG "C3'" "H3'" sing N N 557 OMG "O3'" "HO3'" sing N N 558 OMG "C2'" "O2'" sing N N 559 OMG "C2'" "C1'" sing N N 560 OMG "C2'" "H2'" sing N N 561 OMG "O2'" CM2 sing N N 562 OMG CM2 HM21 sing N N 563 OMG CM2 HM22 sing N N 564 OMG CM2 HM23 sing N N 565 OMG "C1'" N9 sing N N 566 OMG "C1'" "H1'" sing N N 567 OMG N9 C8 sing Y N 568 OMG N9 C4 sing Y N 569 OMG C8 N7 doub Y N 570 OMG C8 H8 sing N N 571 OMG N7 C5 sing Y N 572 OMG C5 C6 sing N N 573 OMG C5 C4 doub Y N 574 OMG C6 O6 doub N N 575 OMG C6 N1 sing N N 576 OMG N1 C2 sing N N 577 OMG N1 HN1 sing N N 578 OMG C2 N2 sing N N 579 OMG C2 N3 doub N N 580 OMG N2 HN21 sing N N 581 OMG N2 HN22 sing N N 582 OMG N3 C4 sing N N 583 PHE N CA sing N N 584 PHE N H sing N N 585 PHE N H2 sing N N 586 PHE CA C sing N N 587 PHE CA CB sing N N 588 PHE CA HA sing N N 589 PHE C O doub N N 590 PHE C OXT sing N N 591 PHE CB CG sing N N 592 PHE CB HB2 sing N N 593 PHE CB HB3 sing N N 594 PHE CG CD1 doub Y N 595 PHE CG CD2 sing Y N 596 PHE CD1 CE1 sing Y N 597 PHE CD1 HD1 sing N N 598 PHE CD2 CE2 doub Y N 599 PHE CD2 HD2 sing N N 600 PHE CE1 CZ doub Y N 601 PHE CE1 HE1 sing N N 602 PHE CE2 CZ sing Y N 603 PHE CE2 HE2 sing N N 604 PHE CZ HZ sing N N 605 PHE OXT HXT sing N N 606 PRO N CA sing N N 607 PRO N CD sing N N 608 PRO N H sing N N 609 PRO CA C sing N N 610 PRO CA CB sing N N 611 PRO CA HA sing N N 612 PRO C O doub N N 613 PRO C OXT sing N N 614 PRO CB CG sing N N 615 PRO CB HB2 sing N N 616 PRO CB HB3 sing N N 617 PRO CG CD sing N N 618 PRO CG HG2 sing N N 619 PRO CG HG3 sing N N 620 PRO CD HD2 sing N N 621 PRO CD HD3 sing N N 622 PRO OXT HXT sing N N 623 SER N CA sing N N 624 SER N H sing N N 625 SER N H2 sing N N 626 SER CA C sing N N 627 SER CA CB sing N N 628 SER CA HA sing N N 629 SER C O doub N N 630 SER C OXT sing N N 631 SER CB OG sing N N 632 SER CB HB2 sing N N 633 SER CB HB3 sing N N 634 SER OG HG sing N N 635 SER OXT HXT sing N N 636 THR N CA sing N N 637 THR N H sing N N 638 THR N H2 sing N N 639 THR CA C sing N N 640 THR CA CB sing N N 641 THR CA HA sing N N 642 THR C O doub N N 643 THR C OXT sing N N 644 THR CB OG1 sing N N 645 THR CB CG2 sing N N 646 THR CB HB sing N N 647 THR OG1 HG1 sing N N 648 THR CG2 HG21 sing N N 649 THR CG2 HG22 sing N N 650 THR CG2 HG23 sing N N 651 THR OXT HXT sing N N 652 TRP N CA sing N N 653 TRP N H sing N N 654 TRP N H2 sing N N 655 TRP CA C sing N N 656 TRP CA CB sing N N 657 TRP CA HA sing N N 658 TRP C O doub N N 659 TRP C OXT sing N N 660 TRP CB CG sing N N 661 TRP CB HB2 sing N N 662 TRP CB HB3 sing N N 663 TRP CG CD1 doub Y N 664 TRP CG CD2 sing Y N 665 TRP CD1 NE1 sing Y N 666 TRP CD1 HD1 sing N N 667 TRP CD2 CE2 doub Y N 668 TRP CD2 CE3 sing Y N 669 TRP NE1 CE2 sing Y N 670 TRP NE1 HE1 sing N N 671 TRP CE2 CZ2 sing Y N 672 TRP CE3 CZ3 doub Y N 673 TRP CE3 HE3 sing N N 674 TRP CZ2 CH2 doub Y N 675 TRP CZ2 HZ2 sing N N 676 TRP CZ3 CH2 sing Y N 677 TRP CZ3 HZ3 sing N N 678 TRP CH2 HH2 sing N N 679 TRP OXT HXT sing N N 680 TYR N CA sing N N 681 TYR N H sing N N 682 TYR N H2 sing N N 683 TYR CA C sing N N 684 TYR CA CB sing N N 685 TYR CA HA sing N N 686 TYR C O doub N N 687 TYR C OXT sing N N 688 TYR CB CG sing N N 689 TYR CB HB2 sing N N 690 TYR CB HB3 sing N N 691 TYR CG CD1 doub Y N 692 TYR CG CD2 sing Y N 693 TYR CD1 CE1 sing Y N 694 TYR CD1 HD1 sing N N 695 TYR CD2 CE2 doub Y N 696 TYR CD2 HD2 sing N N 697 TYR CE1 CZ doub Y N 698 TYR CE1 HE1 sing N N 699 TYR CE2 CZ sing Y N 700 TYR CE2 HE2 sing N N 701 TYR CZ OH sing N N 702 TYR OH HH sing N N 703 TYR OXT HXT sing N N 704 UPE OP1 P doub N N 705 UPE "O5'" P sing N N 706 UPE OP3 P sing N N 707 UPE P OP2 sing N N 708 UPE "C1'" N1 sing N N 709 UPE C2 N1 sing N N 710 UPE N1 C6 sing N N 711 UPE O2 C2 doub N N 712 UPE C2 N3 sing N N 713 UPE N3 C4 sing N N 714 UPE N3 HN3 sing N N 715 UPE C4 O4 doub N N 716 UPE C4 C5 sing N N 717 UPE C6 C5 doub N N 718 UPE C5 C21 sing N N 719 UPE C6 H6 sing N N 720 UPE "C2'" "C1'" sing N N 721 UPE "C1'" "O4'" sing N N 722 UPE "C1'" "H1'" sing N N 723 UPE "C2'" "C3'" sing N N 724 UPE "C2'" "H2'" sing N N 725 UPE "C2'" "H2'A" sing N N 726 UPE C21 O22 doub N N 727 UPE C21 N23 sing N N 728 UPE N23 C24 sing N N 729 UPE N23 HN23 sing N N 730 UPE C24 C25 sing N N 731 UPE C24 H24 sing N N 732 UPE C24 H24A sing N N 733 UPE C25 C26 sing N N 734 UPE C25 H25 sing N N 735 UPE C25 H25A sing N N 736 UPE C31 C26 doub Y N 737 UPE C26 C27 sing Y N 738 UPE C27 C28 doub Y N 739 UPE C27 H27 sing N N 740 UPE C29 C28 sing Y N 741 UPE C28 H28 sing N N 742 UPE C30 C29 doub Y N 743 UPE C29 H29 sing N N 744 UPE "O3'" "C3'" sing N N 745 UPE "C3'" "C4'" sing N N 746 UPE "C3'" "H3'" sing N N 747 UPE "O3'" "HO3'" sing N N 748 UPE C31 C30 sing Y N 749 UPE C30 H30 sing N N 750 UPE C31 H31 sing N N 751 UPE "C4'" "O4'" sing N N 752 UPE "C4'" "C5'" sing N N 753 UPE "C4'" "H4'" sing N N 754 UPE "C5'" "O5'" sing N N 755 UPE "C5'" "H5'" sing N N 756 UPE "C5'" "H5'A" sing N N 757 UPE OP2 HOP2 sing N N 758 UPE OP3 HOP3 sing N N 759 VAL N CA sing N N 760 VAL N H sing N N 761 VAL N H2 sing N N 762 VAL CA C sing N N 763 VAL CA CB sing N N 764 VAL CA HA sing N N 765 VAL C O doub N N 766 VAL C OXT sing N N 767 VAL CB CG1 sing N N 768 VAL CB CG2 sing N N 769 VAL CB HB sing N N 770 VAL CG1 HG11 sing N N 771 VAL CG1 HG12 sing N N 772 VAL CG1 HG13 sing N N 773 VAL CG2 HG21 sing N N 774 VAL CG2 HG22 sing N N 775 VAL CG2 HG23 sing N N 776 VAL OXT HXT sing N N 777 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4NI7 'double helix' 4NI7 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B OMC 3 1_555 B DG 29 1_555 -0.079 -3.479 -0.191 -53.567 31.600 -149.567 1 B_OMC3:DG29_B B 3 ? B 29 ? 22 2 1 B DG 31 1_555 B DG 2 1_555 -1.416 -3.246 1.293 -26.725 1.358 92.060 2 B_DG31:DG2_B B 31 ? B 2 ? 6 3 1 B DG 11 1_555 B DG 5 1_555 1.465 3.377 0.077 24.218 -6.682 -90.486 3 B_DG11:DG5_B B 11 ? B 5 ? 6 3 1 B OMG 6 1_555 B DG 10 1_555 1.422 3.819 0.122 19.720 -1.213 -85.224 4 B_OMG6:DG10_B B 6 ? B 10 ? 6 3 1 B DA 13 1_555 B DG 26 1_555 -6.480 -4.090 1.233 -27.338 -1.017 15.159 5 B_DA13:DG26_B B 13 ? B 26 ? 11 9 1 B DC 18 1_555 B DG 21 1_555 0.810 0.543 -0.939 31.760 15.012 15.854 6 B_DC18:DG21_B B 18 ? B 21 ? ? 1 1 B DG 32 1_555 B DG 1 1_555 1.523 3.310 -0.994 19.891 1.047 -91.798 7 B_DG32:DG1_B B 32 ? B 1 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B OMC 3 1_555 B DG 29 1_555 B DG 31 1_555 B DG 2 1_555 1.297 -4.961 -0.907 -122.192 -87.785 13.173 -2.346 -0.974 1.720 -51.500 71.686 150.656 1 BB_OMC3DG31:DG2DG29_BB B 3 ? B 29 ? B 31 ? B 2 ? 1 B DG 31 1_555 B DG 2 1_555 B DG 11 1_555 B DG 5 1_555 1.603 3.433 -0.010 -10.495 -10.572 -179.427 -1.717 0.801 -0.008 5.286 -5.247 -179.432 2 BB_DG31DG11:DG5DG2_BB B 31 ? B 2 ? B 11 ? B 5 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1IL6 _pdbx_initial_refinement_model.details 'PDB ENTRY 1IL6' #