data_4NIH # _entry.id 4NIH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NIH pdb_00004nih 10.2210/pdb4nih/pdb NDB NA2764 ? ? RCSB RCSB083244 ? ? WWPDB D_1000083244 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-16 2 'Structure model' 1 1 2014-05-28 3 'Structure model' 1 2 2023-09-20 4 'Structure model' 1 3 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site 9 4 'Structure model' pdbx_entry_details 10 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.conn_type_id' 17 3 'Structure model' '_struct_conn.id' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 3 'Structure model' '_struct_ref_seq_dif.details' 35 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NIH _pdbx_database_status.recvd_initial_deposition_date 2013-11-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NID . unspecified PDB 4NIG . unspecified PDB 4NII . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yi, C.Q.' 1 'Zhu, C.X.' 2 # _citation.id primary _citation.title 'Switching Demethylation Activities between AlkB Family RNA/DNA Demethylases through Exchange of Active-Site Residues.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 53 _citation.page_first 3659 _citation.page_last 3662 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24596302 _citation.pdbx_database_id_DOI 10.1002/anie.201310050 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhu, C.' 1 ? primary 'Yi, C.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alpha-ketoglutarate-dependent dioxygenase AlkB' 22814.148 1 1.14.11.33 S129C/E136L 'UNP residues 13-216' ? 2 polymer syn "5'-D(*TP*AP*GP*GP*TP*AP*AP*(6MA)P*AP*CP*CP*GP*T)-3'" 4073.779 1 ? ? ? ? 3 polymer syn "5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'" 3950.598 1 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 5 non-polymer syn '2-OXOGLUTARIC ACID' 146.098 1 ? ? ? ? 6 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 7 water nat water 18.015 472 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alkylated DNA repair protein AlkB, DNA oxidative demethylase AlkB' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPA MPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLCLHQDKDLPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLE HGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE ; ;QEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPA MPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLCLHQDKDLPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLE HGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE ; A ? 2 polydeoxyribonucleotide no yes '(DT)(DA)(DG)(DG)(DT)(DA)(DA)(6MA)(DA)(2YR)(DC)(DG)(DT)' TAGGTAAAAXCGT B ? 3 polydeoxyribonucleotide no no '(DA)(DA)(DC)(DG)(DG)(DT)(DA)(DT)(DT)(DA)(DC)(DC)(DT)' AACGGTATTACCT C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MANGANESE (II) ION' MN 5 '2-OXOGLUTARIC ACID' AKG 6 GLYCEROL GOL 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 GLU n 1 3 PRO n 1 4 LEU n 1 5 ALA n 1 6 ALA n 1 7 GLY n 1 8 ALA n 1 9 VAL n 1 10 ILE n 1 11 LEU n 1 12 ARG n 1 13 ARG n 1 14 PHE n 1 15 ALA n 1 16 PHE n 1 17 ASN n 1 18 ALA n 1 19 ALA n 1 20 GLU n 1 21 GLN n 1 22 LEU n 1 23 ILE n 1 24 ARG n 1 25 ASP n 1 26 ILE n 1 27 ASN n 1 28 ASP n 1 29 VAL n 1 30 ALA n 1 31 SER n 1 32 GLN n 1 33 SER n 1 34 PRO n 1 35 PHE n 1 36 ARG n 1 37 GLN n 1 38 MET n 1 39 VAL n 1 40 THR n 1 41 PRO n 1 42 GLY n 1 43 GLY n 1 44 TYR n 1 45 THR n 1 46 MET n 1 47 SER n 1 48 VAL n 1 49 ALA n 1 50 MET n 1 51 THR n 1 52 ASN n 1 53 CYS n 1 54 GLY n 1 55 HIS n 1 56 LEU n 1 57 GLY n 1 58 TRP n 1 59 THR n 1 60 THR n 1 61 HIS n 1 62 ARG n 1 63 GLN n 1 64 GLY n 1 65 TYR n 1 66 LEU n 1 67 TYR n 1 68 SER n 1 69 PRO n 1 70 ILE n 1 71 ASP n 1 72 PRO n 1 73 GLN n 1 74 THR n 1 75 ASN n 1 76 LYS n 1 77 PRO n 1 78 TRP n 1 79 PRO n 1 80 ALA n 1 81 MET n 1 82 PRO n 1 83 GLN n 1 84 SER n 1 85 PHE n 1 86 HIS n 1 87 ASN n 1 88 LEU n 1 89 CYS n 1 90 GLN n 1 91 ARG n 1 92 ALA n 1 93 ALA n 1 94 THR n 1 95 ALA n 1 96 ALA n 1 97 GLY n 1 98 TYR n 1 99 PRO n 1 100 ASP n 1 101 PHE n 1 102 GLN n 1 103 PRO n 1 104 ASP n 1 105 ALA n 1 106 CYS n 1 107 LEU n 1 108 ILE n 1 109 ASN n 1 110 ARG n 1 111 TYR n 1 112 ALA n 1 113 PRO n 1 114 GLY n 1 115 ALA n 1 116 LYS n 1 117 LEU n 1 118 CYS n 1 119 LEU n 1 120 HIS n 1 121 GLN n 1 122 ASP n 1 123 LYS n 1 124 ASP n 1 125 LEU n 1 126 PRO n 1 127 ASP n 1 128 LEU n 1 129 ARG n 1 130 ALA n 1 131 PRO n 1 132 ILE n 1 133 VAL n 1 134 SER n 1 135 VAL n 1 136 SER n 1 137 LEU n 1 138 GLY n 1 139 LEU n 1 140 PRO n 1 141 ALA n 1 142 ILE n 1 143 PHE n 1 144 GLN n 1 145 PHE n 1 146 GLY n 1 147 GLY n 1 148 LEU n 1 149 LYS n 1 150 ARG n 1 151 ASN n 1 152 ASP n 1 153 PRO n 1 154 LEU n 1 155 LYS n 1 156 ARG n 1 157 LEU n 1 158 LEU n 1 159 LEU n 1 160 GLU n 1 161 HIS n 1 162 GLY n 1 163 ASP n 1 164 VAL n 1 165 VAL n 1 166 VAL n 1 167 TRP n 1 168 GLY n 1 169 GLY n 1 170 GLU n 1 171 SER n 1 172 ARG n 1 173 LEU n 1 174 PHE n 1 175 TYR n 1 176 HIS n 1 177 GLY n 1 178 ILE n 1 179 GLN n 1 180 PRO n 1 181 LEU n 1 182 LYS n 1 183 ALA n 1 184 GLY n 1 185 PHE n 1 186 HIS n 1 187 PRO n 1 188 LEU n 1 189 THR n 1 190 ILE n 1 191 ASP n 1 192 CYS n 1 193 ARG n 1 194 TYR n 1 195 ASN n 1 196 LEU n 1 197 THR n 1 198 PHE n 1 199 ARG n 1 200 GLN n 1 201 ALA n 1 202 GLY n 1 203 LYS n 1 204 LYS n 1 205 GLU n 2 1 DT n 2 2 DA n 2 3 DG n 2 4 DG n 2 5 DT n 2 6 DA n 2 7 DA n 2 8 6MA n 2 9 DA n 2 10 2YR n 2 11 DC n 2 12 DG n 2 13 DT n 3 1 DA n 3 2 DA n 3 3 DC n 3 4 DG n 3 5 DG n 3 6 DT n 3 7 DA n 3 8 DT n 3 9 DT n 3 10 DA n 3 11 DC n 3 12 DC n 3 13 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'alkB, aidD, b2212, JW2200' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2YR non-polymer . ;2'-deoxy-N-(2-sulfanylethyl)cytidine 5'-(dihydrogen phosphate) ; ? 'C11 H18 N3 O7 P S' 367.315 6MA 'DNA linking' n "N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O6 P' 345.248 AKG non-polymer . '2-OXOGLUTARIC ACID' ? 'C5 H6 O5' 146.098 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 12 ? ? ? A . n A 1 2 GLU 2 13 ? ? ? A . n A 1 3 PRO 3 14 14 PRO PRO A . n A 1 4 LEU 4 15 15 LEU LEU A . n A 1 5 ALA 5 16 16 ALA ALA A . n A 1 6 ALA 6 17 17 ALA ALA A . n A 1 7 GLY 7 18 18 GLY GLY A . n A 1 8 ALA 8 19 19 ALA ALA A . n A 1 9 VAL 9 20 20 VAL VAL A . n A 1 10 ILE 10 21 21 ILE ILE A . n A 1 11 LEU 11 22 22 LEU LEU A . n A 1 12 ARG 12 23 23 ARG ARG A . n A 1 13 ARG 13 24 24 ARG ARG A . n A 1 14 PHE 14 25 25 PHE PHE A . n A 1 15 ALA 15 26 26 ALA ALA A . n A 1 16 PHE 16 27 27 PHE PHE A . n A 1 17 ASN 17 28 28 ASN ASN A . n A 1 18 ALA 18 29 29 ALA ALA A . n A 1 19 ALA 19 30 30 ALA ALA A . n A 1 20 GLU 20 31 31 GLU GLU A . n A 1 21 GLN 21 32 32 GLN GLN A . n A 1 22 LEU 22 33 33 LEU LEU A . n A 1 23 ILE 23 34 34 ILE ILE A . n A 1 24 ARG 24 35 35 ARG ARG A . n A 1 25 ASP 25 36 36 ASP ASP A . n A 1 26 ILE 26 37 37 ILE ILE A . n A 1 27 ASN 27 38 38 ASN ASN A . n A 1 28 ASP 28 39 39 ASP ASP A . n A 1 29 VAL 29 40 40 VAL VAL A . n A 1 30 ALA 30 41 41 ALA ALA A . n A 1 31 SER 31 42 42 SER SER A . n A 1 32 GLN 32 43 43 GLN GLN A . n A 1 33 SER 33 44 44 SER SER A . n A 1 34 PRO 34 45 45 PRO PRO A . n A 1 35 PHE 35 46 46 PHE PHE A . n A 1 36 ARG 36 47 47 ARG ARG A . n A 1 37 GLN 37 48 48 GLN GLN A . n A 1 38 MET 38 49 49 MET MET A . n A 1 39 VAL 39 50 50 VAL VAL A . n A 1 40 THR 40 51 51 THR THR A . n A 1 41 PRO 41 52 52 PRO PRO A . n A 1 42 GLY 42 53 53 GLY GLY A . n A 1 43 GLY 43 54 54 GLY GLY A . n A 1 44 TYR 44 55 55 TYR TYR A . n A 1 45 THR 45 56 56 THR THR A . n A 1 46 MET 46 57 57 MET MET A . n A 1 47 SER 47 58 58 SER SER A . n A 1 48 VAL 48 59 59 VAL VAL A . n A 1 49 ALA 49 60 60 ALA ALA A . n A 1 50 MET 50 61 61 MET MET A . n A 1 51 THR 51 62 62 THR THR A . n A 1 52 ASN 52 63 63 ASN ASN A . n A 1 53 CYS 53 64 64 CYS CYS A . n A 1 54 GLY 54 65 65 GLY GLY A . n A 1 55 HIS 55 66 66 HIS HIS A . n A 1 56 LEU 56 67 67 LEU LEU A . n A 1 57 GLY 57 68 68 GLY GLY A . n A 1 58 TRP 58 69 69 TRP TRP A . n A 1 59 THR 59 70 70 THR THR A . n A 1 60 THR 60 71 71 THR THR A . n A 1 61 HIS 61 72 72 HIS HIS A . n A 1 62 ARG 62 73 73 ARG ARG A . n A 1 63 GLN 63 74 74 GLN GLN A . n A 1 64 GLY 64 75 75 GLY GLY A . n A 1 65 TYR 65 76 76 TYR TYR A . n A 1 66 LEU 66 77 77 LEU LEU A . n A 1 67 TYR 67 78 78 TYR TYR A . n A 1 68 SER 68 79 79 SER SER A . n A 1 69 PRO 69 80 80 PRO PRO A . n A 1 70 ILE 70 81 81 ILE ILE A . n A 1 71 ASP 71 82 82 ASP ASP A . n A 1 72 PRO 72 83 83 PRO PRO A . n A 1 73 GLN 73 84 84 GLN GLN A . n A 1 74 THR 74 85 85 THR THR A . n A 1 75 ASN 75 86 86 ASN ASN A . n A 1 76 LYS 76 87 87 LYS LYS A . n A 1 77 PRO 77 88 88 PRO PRO A . n A 1 78 TRP 78 89 89 TRP TRP A . n A 1 79 PRO 79 90 90 PRO PRO A . n A 1 80 ALA 80 91 91 ALA ALA A . n A 1 81 MET 81 92 92 MET MET A . n A 1 82 PRO 82 93 93 PRO PRO A . n A 1 83 GLN 83 94 94 GLN GLN A . n A 1 84 SER 84 95 95 SER SER A . n A 1 85 PHE 85 96 96 PHE PHE A . n A 1 86 HIS 86 97 97 HIS HIS A . n A 1 87 ASN 87 98 98 ASN ASN A . n A 1 88 LEU 88 99 99 LEU LEU A . n A 1 89 CYS 89 100 100 CYS CYS A . n A 1 90 GLN 90 101 101 GLN GLN A . n A 1 91 ARG 91 102 102 ARG ARG A . n A 1 92 ALA 92 103 103 ALA ALA A . n A 1 93 ALA 93 104 104 ALA ALA A . n A 1 94 THR 94 105 105 THR THR A . n A 1 95 ALA 95 106 106 ALA ALA A . n A 1 96 ALA 96 107 107 ALA ALA A . n A 1 97 GLY 97 108 108 GLY GLY A . n A 1 98 TYR 98 109 109 TYR TYR A . n A 1 99 PRO 99 110 110 PRO PRO A . n A 1 100 ASP 100 111 111 ASP ASP A . n A 1 101 PHE 101 112 112 PHE PHE A . n A 1 102 GLN 102 113 113 GLN GLN A . n A 1 103 PRO 103 114 114 PRO PRO A . n A 1 104 ASP 104 115 115 ASP ASP A . n A 1 105 ALA 105 116 116 ALA ALA A . n A 1 106 CYS 106 117 117 CYS CYS A . n A 1 107 LEU 107 118 118 LEU LEU A . n A 1 108 ILE 108 119 119 ILE ILE A . n A 1 109 ASN 109 120 120 ASN ASN A . n A 1 110 ARG 110 121 121 ARG ARG A . n A 1 111 TYR 111 122 122 TYR TYR A . n A 1 112 ALA 112 123 123 ALA ALA A . n A 1 113 PRO 113 124 124 PRO PRO A . n A 1 114 GLY 114 125 125 GLY GLY A . n A 1 115 ALA 115 126 126 ALA ALA A . n A 1 116 LYS 116 127 127 LYS LYS A . n A 1 117 LEU 117 128 128 LEU LEU A . n A 1 118 CYS 118 129 129 CYS CYS A . n A 1 119 LEU 119 130 130 LEU LEU A . n A 1 120 HIS 120 131 131 HIS HIS A . n A 1 121 GLN 121 132 132 GLN GLN A . n A 1 122 ASP 122 133 133 ASP ASP A . n A 1 123 LYS 123 134 134 LYS LYS A . n A 1 124 ASP 124 135 135 ASP ASP A . n A 1 125 LEU 125 136 136 LEU LEU A . n A 1 126 PRO 126 137 137 PRO PRO A . n A 1 127 ASP 127 138 138 ASP ASP A . n A 1 128 LEU 128 139 139 LEU LEU A . n A 1 129 ARG 129 140 140 ARG ARG A . n A 1 130 ALA 130 141 141 ALA ALA A . n A 1 131 PRO 131 142 142 PRO PRO A . n A 1 132 ILE 132 143 143 ILE ILE A . n A 1 133 VAL 133 144 144 VAL VAL A . n A 1 134 SER 134 145 145 SER SER A . n A 1 135 VAL 135 146 146 VAL VAL A . n A 1 136 SER 136 147 147 SER SER A . n A 1 137 LEU 137 148 148 LEU LEU A . n A 1 138 GLY 138 149 149 GLY GLY A . n A 1 139 LEU 139 150 150 LEU LEU A . n A 1 140 PRO 140 151 151 PRO PRO A . n A 1 141 ALA 141 152 152 ALA ALA A . n A 1 142 ILE 142 153 153 ILE ILE A . n A 1 143 PHE 143 154 154 PHE PHE A . n A 1 144 GLN 144 155 155 GLN GLN A . n A 1 145 PHE 145 156 156 PHE PHE A . n A 1 146 GLY 146 157 157 GLY GLY A . n A 1 147 GLY 147 158 158 GLY GLY A . n A 1 148 LEU 148 159 159 LEU LEU A . n A 1 149 LYS 149 160 160 LYS LYS A . n A 1 150 ARG 150 161 161 ARG ARG A . n A 1 151 ASN 151 162 162 ASN ASN A . n A 1 152 ASP 152 163 163 ASP ASP A . n A 1 153 PRO 153 164 164 PRO PRO A . n A 1 154 LEU 154 165 165 LEU LEU A . n A 1 155 LYS 155 166 166 LYS LYS A . n A 1 156 ARG 156 167 167 ARG ARG A . n A 1 157 LEU 157 168 168 LEU LEU A . n A 1 158 LEU 158 169 169 LEU LEU A . n A 1 159 LEU 159 170 170 LEU LEU A . n A 1 160 GLU 160 171 171 GLU GLU A . n A 1 161 HIS 161 172 172 HIS HIS A . n A 1 162 GLY 162 173 173 GLY GLY A . n A 1 163 ASP 163 174 174 ASP ASP A . n A 1 164 VAL 164 175 175 VAL VAL A . n A 1 165 VAL 165 176 176 VAL VAL A . n A 1 166 VAL 166 177 177 VAL VAL A . n A 1 167 TRP 167 178 178 TRP TRP A . n A 1 168 GLY 168 179 179 GLY GLY A . n A 1 169 GLY 169 180 180 GLY GLY A . n A 1 170 GLU 170 181 181 GLU GLU A . n A 1 171 SER 171 182 182 SER SER A . n A 1 172 ARG 172 183 183 ARG ARG A . n A 1 173 LEU 173 184 184 LEU LEU A . n A 1 174 PHE 174 185 185 PHE PHE A . n A 1 175 TYR 175 186 186 TYR TYR A . n A 1 176 HIS 176 187 187 HIS HIS A . n A 1 177 GLY 177 188 188 GLY GLY A . n A 1 178 ILE 178 189 189 ILE ILE A . n A 1 179 GLN 179 190 190 GLN GLN A . n A 1 180 PRO 180 191 191 PRO PRO A . n A 1 181 LEU 181 192 192 LEU LEU A . n A 1 182 LYS 182 193 193 LYS LYS A . n A 1 183 ALA 183 194 194 ALA ALA A . n A 1 184 GLY 184 195 195 GLY GLY A . n A 1 185 PHE 185 196 196 PHE PHE A . n A 1 186 HIS 186 197 197 HIS HIS A . n A 1 187 PRO 187 198 198 PRO PRO A . n A 1 188 LEU 188 199 199 LEU LEU A . n A 1 189 THR 189 200 200 THR THR A . n A 1 190 ILE 190 201 201 ILE ILE A . n A 1 191 ASP 191 202 202 ASP ASP A . n A 1 192 CYS 192 203 203 CYS CYS A . n A 1 193 ARG 193 204 204 ARG ARG A . n A 1 194 TYR 194 205 205 TYR TYR A . n A 1 195 ASN 195 206 206 ASN ASN A . n A 1 196 LEU 196 207 207 LEU LEU A . n A 1 197 THR 197 208 208 THR THR A . n A 1 198 PHE 198 209 209 PHE PHE A . n A 1 199 ARG 199 210 210 ARG ARG A . n A 1 200 GLN 200 211 211 GLN GLN A . n A 1 201 ALA 201 212 212 ALA ALA A . n A 1 202 GLY 202 213 213 GLY GLY A . n A 1 203 LYS 203 214 214 LYS LYS A . n A 1 204 LYS 204 215 ? ? ? A . n A 1 205 GLU 205 216 ? ? ? A . n B 2 1 DT 1 1 ? ? ? B . n B 2 2 DA 2 2 2 DA DA B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 6MA 8 8 8 6MA 6MA B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 2YR 10 10 10 2YR DC B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DG 12 12 12 DG DG B . n B 2 13 DT 13 13 13 DT DT B . n C 3 1 DA 1 1 1 DA DA C . n C 3 2 DA 2 2 2 DA DA C . n C 3 3 DC 3 3 3 DC DC C . n C 3 4 DG 4 4 4 DG DG C . n C 3 5 DG 5 5 5 DG DG C . n C 3 6 DT 6 6 6 DT DT C . n C 3 7 DA 7 7 7 DA DA C . n C 3 8 DT 8 8 8 DT DT C . n C 3 9 DT 9 9 9 DT DT C . n C 3 10 DA 10 10 10 DA DA C . n C 3 11 DC 11 11 11 DC DC C . n C 3 12 DC 12 12 12 DC DC C . n C 3 13 DT 13 13 13 DT DT C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN 1 301 1 MN MN A . E 5 AKG 1 302 503 AKG AKG A . F 6 GOL 1 303 1 GOL GOL A . G 7 HOH 1 401 1 HOH HOH A . G 7 HOH 2 402 2 HOH HOH A . G 7 HOH 3 403 3 HOH HOH A . G 7 HOH 4 404 4 HOH HOH A . G 7 HOH 5 405 5 HOH HOH A . G 7 HOH 6 406 6 HOH HOH A . G 7 HOH 7 407 7 HOH HOH A . G 7 HOH 8 408 8 HOH HOH A . G 7 HOH 9 409 9 HOH HOH A . G 7 HOH 10 410 10 HOH HOH A . G 7 HOH 11 411 11 HOH HOH A . G 7 HOH 12 412 12 HOH HOH A . G 7 HOH 13 413 13 HOH HOH A . G 7 HOH 14 414 14 HOH HOH A . G 7 HOH 15 415 15 HOH HOH A . G 7 HOH 16 416 16 HOH HOH A . G 7 HOH 17 417 17 HOH HOH A . G 7 HOH 18 418 18 HOH HOH A . G 7 HOH 19 419 19 HOH HOH A . G 7 HOH 20 420 20 HOH HOH A . G 7 HOH 21 421 21 HOH HOH A . G 7 HOH 22 422 22 HOH HOH A . G 7 HOH 23 423 23 HOH HOH A . G 7 HOH 24 424 24 HOH HOH A . G 7 HOH 25 425 25 HOH HOH A . G 7 HOH 26 426 26 HOH HOH A . G 7 HOH 27 427 27 HOH HOH A . G 7 HOH 28 428 28 HOH HOH A . G 7 HOH 29 429 29 HOH HOH A . G 7 HOH 30 430 30 HOH HOH A . G 7 HOH 31 431 31 HOH HOH A . G 7 HOH 32 432 32 HOH HOH A . G 7 HOH 33 433 33 HOH HOH A . G 7 HOH 34 434 34 HOH HOH A . G 7 HOH 35 435 35 HOH HOH A . G 7 HOH 36 436 36 HOH HOH A . G 7 HOH 37 437 37 HOH HOH A . G 7 HOH 38 438 38 HOH HOH A . G 7 HOH 39 439 39 HOH HOH A . G 7 HOH 40 440 40 HOH HOH A . G 7 HOH 41 441 41 HOH HOH A . G 7 HOH 42 442 42 HOH HOH A . G 7 HOH 43 443 43 HOH HOH A . G 7 HOH 44 444 44 HOH HOH A . G 7 HOH 45 445 45 HOH HOH A . G 7 HOH 46 446 46 HOH HOH A . G 7 HOH 47 447 47 HOH HOH A . G 7 HOH 48 448 48 HOH HOH A . G 7 HOH 49 449 49 HOH HOH A . G 7 HOH 50 450 50 HOH HOH A . G 7 HOH 51 451 51 HOH HOH A . G 7 HOH 52 452 52 HOH HOH A . G 7 HOH 53 453 54 HOH HOH A . G 7 HOH 54 454 55 HOH HOH A . G 7 HOH 55 455 56 HOH HOH A . G 7 HOH 56 456 57 HOH HOH A . G 7 HOH 57 457 58 HOH HOH A . G 7 HOH 58 458 59 HOH HOH A . G 7 HOH 59 459 60 HOH HOH A . G 7 HOH 60 460 61 HOH HOH A . G 7 HOH 61 461 63 HOH HOH A . G 7 HOH 62 462 64 HOH HOH A . G 7 HOH 63 463 65 HOH HOH A . G 7 HOH 64 464 66 HOH HOH A . G 7 HOH 65 465 67 HOH HOH A . G 7 HOH 66 466 68 HOH HOH A . G 7 HOH 67 467 69 HOH HOH A . G 7 HOH 68 468 70 HOH HOH A . G 7 HOH 69 469 71 HOH HOH A . G 7 HOH 70 470 72 HOH HOH A . G 7 HOH 71 471 73 HOH HOH A . G 7 HOH 72 472 74 HOH HOH A . G 7 HOH 73 473 76 HOH HOH A . G 7 HOH 74 474 77 HOH HOH A . G 7 HOH 75 475 78 HOH HOH A . G 7 HOH 76 476 79 HOH HOH A . G 7 HOH 77 477 80 HOH HOH A . G 7 HOH 78 478 82 HOH HOH A . G 7 HOH 79 479 83 HOH HOH A . G 7 HOH 80 480 84 HOH HOH A . G 7 HOH 81 481 85 HOH HOH A . G 7 HOH 82 482 86 HOH HOH A . G 7 HOH 83 483 87 HOH HOH A . G 7 HOH 84 484 88 HOH HOH A . G 7 HOH 85 485 89 HOH HOH A . G 7 HOH 86 486 90 HOH HOH A . G 7 HOH 87 487 91 HOH HOH A . G 7 HOH 88 488 92 HOH HOH A . G 7 HOH 89 489 93 HOH HOH A . G 7 HOH 90 490 94 HOH HOH A . G 7 HOH 91 491 96 HOH HOH A . G 7 HOH 92 492 98 HOH HOH A . G 7 HOH 93 493 99 HOH HOH A . G 7 HOH 94 494 100 HOH HOH A . G 7 HOH 95 495 101 HOH HOH A . G 7 HOH 96 496 102 HOH HOH A . G 7 HOH 97 497 103 HOH HOH A . G 7 HOH 98 498 104 HOH HOH A . G 7 HOH 99 499 105 HOH HOH A . G 7 HOH 100 500 106 HOH HOH A . G 7 HOH 101 501 107 HOH HOH A . G 7 HOH 102 502 108 HOH HOH A . G 7 HOH 103 503 109 HOH HOH A . G 7 HOH 104 504 110 HOH HOH A . G 7 HOH 105 505 115 HOH HOH A . G 7 HOH 106 506 116 HOH HOH A . G 7 HOH 107 507 118 HOH HOH A . G 7 HOH 108 508 119 HOH HOH A . G 7 HOH 109 509 120 HOH HOH A . G 7 HOH 110 510 121 HOH HOH A . G 7 HOH 111 511 122 HOH HOH A . G 7 HOH 112 512 123 HOH HOH A . G 7 HOH 113 513 658 HOH HOH A . G 7 HOH 114 514 659 HOH HOH A . G 7 HOH 115 515 660 HOH HOH A . G 7 HOH 116 516 661 HOH HOH A . G 7 HOH 117 517 662 HOH HOH A . G 7 HOH 118 518 663 HOH HOH A . G 7 HOH 119 519 665 HOH HOH A . G 7 HOH 120 520 666 HOH HOH A . G 7 HOH 121 521 667 HOH HOH A . G 7 HOH 122 522 668 HOH HOH A . G 7 HOH 123 523 669 HOH HOH A . G 7 HOH 124 524 670 HOH HOH A . G 7 HOH 125 525 671 HOH HOH A . G 7 HOH 126 526 672 HOH HOH A . G 7 HOH 127 527 673 HOH HOH A . G 7 HOH 128 528 674 HOH HOH A . G 7 HOH 129 529 675 HOH HOH A . G 7 HOH 130 530 676 HOH HOH A . G 7 HOH 131 531 677 HOH HOH A . G 7 HOH 132 532 678 HOH HOH A . G 7 HOH 133 533 681 HOH HOH A . G 7 HOH 134 534 685 HOH HOH A . G 7 HOH 135 535 686 HOH HOH A . G 7 HOH 136 536 687 HOH HOH A . G 7 HOH 137 537 688 HOH HOH A . G 7 HOH 138 538 689 HOH HOH A . G 7 HOH 139 539 690 HOH HOH A . G 7 HOH 140 540 691 HOH HOH A . G 7 HOH 141 541 692 HOH HOH A . G 7 HOH 142 542 694 HOH HOH A . G 7 HOH 143 543 695 HOH HOH A . G 7 HOH 144 544 696 HOH HOH A . G 7 HOH 145 545 704 HOH HOH A . G 7 HOH 146 546 705 HOH HOH A . G 7 HOH 147 547 706 HOH HOH A . G 7 HOH 148 548 708 HOH HOH A . G 7 HOH 149 549 710 HOH HOH A . G 7 HOH 150 550 711 HOH HOH A . G 7 HOH 151 551 713 HOH HOH A . G 7 HOH 152 552 714 HOH HOH A . G 7 HOH 153 553 715 HOH HOH A . G 7 HOH 154 554 716 HOH HOH A . G 7 HOH 155 555 717 HOH HOH A . G 7 HOH 156 556 719 HOH HOH A . G 7 HOH 157 557 720 HOH HOH A . G 7 HOH 158 558 722 HOH HOH A . G 7 HOH 159 559 723 HOH HOH A . G 7 HOH 160 560 726 HOH HOH A . G 7 HOH 161 561 727 HOH HOH A . G 7 HOH 162 562 728 HOH HOH A . G 7 HOH 163 563 729 HOH HOH A . G 7 HOH 164 564 730 HOH HOH A . G 7 HOH 165 565 731 HOH HOH A . G 7 HOH 166 566 732 HOH HOH A . G 7 HOH 167 567 733 HOH HOH A . G 7 HOH 168 568 734 HOH HOH A . G 7 HOH 169 569 735 HOH HOH A . G 7 HOH 170 570 736 HOH HOH A . G 7 HOH 171 571 737 HOH HOH A . G 7 HOH 172 572 738 HOH HOH A . G 7 HOH 173 573 740 HOH HOH A . G 7 HOH 174 574 741 HOH HOH A . G 7 HOH 175 575 742 HOH HOH A . G 7 HOH 176 576 743 HOH HOH A . G 7 HOH 177 577 744 HOH HOH A . G 7 HOH 178 578 745 HOH HOH A . G 7 HOH 179 579 746 HOH HOH A . G 7 HOH 180 580 747 HOH HOH A . G 7 HOH 181 581 748 HOH HOH A . G 7 HOH 182 582 749 HOH HOH A . G 7 HOH 183 583 750 HOH HOH A . G 7 HOH 184 584 751 HOH HOH A . G 7 HOH 185 585 752 HOH HOH A . G 7 HOH 186 586 753 HOH HOH A . G 7 HOH 187 587 754 HOH HOH A . G 7 HOH 188 588 755 HOH HOH A . G 7 HOH 189 589 756 HOH HOH A . G 7 HOH 190 590 765 HOH HOH A . G 7 HOH 191 591 766 HOH HOH A . G 7 HOH 192 592 772 HOH HOH A . G 7 HOH 193 593 773 HOH HOH A . G 7 HOH 194 594 774 HOH HOH A . G 7 HOH 195 595 775 HOH HOH A . G 7 HOH 196 596 776 HOH HOH A . G 7 HOH 197 597 781 HOH HOH A . G 7 HOH 198 598 783 HOH HOH A . G 7 HOH 199 599 787 HOH HOH A . G 7 HOH 200 600 788 HOH HOH A . G 7 HOH 201 601 789 HOH HOH A . G 7 HOH 202 602 790 HOH HOH A . G 7 HOH 203 603 791 HOH HOH A . G 7 HOH 204 604 797 HOH HOH A . G 7 HOH 205 605 798 HOH HOH A . G 7 HOH 206 606 799 HOH HOH A . G 7 HOH 207 607 801 HOH HOH A . G 7 HOH 208 608 802 HOH HOH A . G 7 HOH 209 609 803 HOH HOH A . G 7 HOH 210 610 804 HOH HOH A . G 7 HOH 211 611 805 HOH HOH A . G 7 HOH 212 612 806 HOH HOH A . G 7 HOH 213 613 807 HOH HOH A . G 7 HOH 214 614 808 HOH HOH A . G 7 HOH 215 615 809 HOH HOH A . G 7 HOH 216 616 810 HOH HOH A . G 7 HOH 217 617 811 HOH HOH A . G 7 HOH 218 618 812 HOH HOH A . G 7 HOH 219 619 813 HOH HOH A . G 7 HOH 220 620 814 HOH HOH A . G 7 HOH 221 621 815 HOH HOH A . G 7 HOH 222 622 816 HOH HOH A . G 7 HOH 223 623 817 HOH HOH A . G 7 HOH 224 624 818 HOH HOH A . G 7 HOH 225 625 821 HOH HOH A . G 7 HOH 226 626 822 HOH HOH A . G 7 HOH 227 627 823 HOH HOH A . G 7 HOH 228 628 824 HOH HOH A . G 7 HOH 229 629 825 HOH HOH A . G 7 HOH 230 630 826 HOH HOH A . G 7 HOH 231 631 828 HOH HOH A . G 7 HOH 232 632 831 HOH HOH A . G 7 HOH 233 633 836 HOH HOH A . G 7 HOH 234 634 838 HOH HOH A . G 7 HOH 235 635 842 HOH HOH A . G 7 HOH 236 636 845 HOH HOH A . G 7 HOH 237 637 846 HOH HOH A . G 7 HOH 238 638 847 HOH HOH A . G 7 HOH 239 639 849 HOH HOH A . G 7 HOH 240 640 851 HOH HOH A . G 7 HOH 241 641 852 HOH HOH A . G 7 HOH 242 642 853 HOH HOH A . G 7 HOH 243 643 854 HOH HOH A . G 7 HOH 244 644 859 HOH HOH A . G 7 HOH 245 645 869 HOH HOH A . G 7 HOH 246 646 900 HOH HOH A . G 7 HOH 247 647 901 HOH HOH A . G 7 HOH 248 648 902 HOH HOH A . G 7 HOH 249 649 903 HOH HOH A . G 7 HOH 250 650 904 HOH HOH A . G 7 HOH 251 651 908 HOH HOH A . G 7 HOH 252 652 909 HOH HOH A . G 7 HOH 253 653 910 HOH HOH A . G 7 HOH 254 654 911 HOH HOH A . G 7 HOH 255 655 912 HOH HOH A . G 7 HOH 256 656 913 HOH HOH A . G 7 HOH 257 657 914 HOH HOH A . G 7 HOH 258 658 915 HOH HOH A . G 7 HOH 259 659 916 HOH HOH A . G 7 HOH 260 660 917 HOH HOH A . G 7 HOH 261 661 918 HOH HOH A . G 7 HOH 262 662 919 HOH HOH A . G 7 HOH 263 663 920 HOH HOH A . G 7 HOH 264 664 921 HOH HOH A . G 7 HOH 265 665 922 HOH HOH A . G 7 HOH 266 666 923 HOH HOH A . G 7 HOH 267 667 924 HOH HOH A . G 7 HOH 268 668 926 HOH HOH A . G 7 HOH 269 669 927 HOH HOH A . G 7 HOH 270 670 928 HOH HOH A . G 7 HOH 271 671 929 HOH HOH A . G 7 HOH 272 672 930 HOH HOH A . G 7 HOH 273 673 931 HOH HOH A . G 7 HOH 274 674 932 HOH HOH A . G 7 HOH 275 675 933 HOH HOH A . G 7 HOH 276 676 934 HOH HOH A . G 7 HOH 277 677 936 HOH HOH A . G 7 HOH 278 678 937 HOH HOH A . G 7 HOH 279 679 938 HOH HOH A . G 7 HOH 280 680 939 HOH HOH A . G 7 HOH 281 681 940 HOH HOH A . G 7 HOH 282 682 941 HOH HOH A . G 7 HOH 283 683 942 HOH HOH A . G 7 HOH 284 684 943 HOH HOH A . G 7 HOH 285 685 944 HOH HOH A . G 7 HOH 286 686 945 HOH HOH A . G 7 HOH 287 687 946 HOH HOH A . G 7 HOH 288 688 947 HOH HOH A . G 7 HOH 289 689 953 HOH HOH A . G 7 HOH 290 690 959 HOH HOH A . G 7 HOH 291 691 960 HOH HOH A . G 7 HOH 292 692 961 HOH HOH A . G 7 HOH 293 693 962 HOH HOH A . G 7 HOH 294 694 963 HOH HOH A . G 7 HOH 295 695 964 HOH HOH A . G 7 HOH 296 696 965 HOH HOH A . G 7 HOH 297 697 966 HOH HOH A . G 7 HOH 298 698 967 HOH HOH A . G 7 HOH 299 699 968 HOH HOH A . G 7 HOH 300 700 970 HOH HOH A . G 7 HOH 301 701 971 HOH HOH A . G 7 HOH 302 702 973 HOH HOH A . G 7 HOH 303 703 974 HOH HOH A . G 7 HOH 304 704 975 HOH HOH A . G 7 HOH 305 705 977 HOH HOH A . G 7 HOH 306 706 978 HOH HOH A . G 7 HOH 307 707 979 HOH HOH A . G 7 HOH 308 708 980 HOH HOH A . G 7 HOH 309 709 982 HOH HOH A . G 7 HOH 310 710 984 HOH HOH A . G 7 HOH 311 711 986 HOH HOH A . G 7 HOH 312 712 987 HOH HOH A . G 7 HOH 313 713 988 HOH HOH A . G 7 HOH 314 714 989 HOH HOH A . G 7 HOH 315 715 991 HOH HOH A . G 7 HOH 316 716 993 HOH HOH A . G 7 HOH 317 717 994 HOH HOH A . G 7 HOH 318 718 995 HOH HOH A . G 7 HOH 319 719 996 HOH HOH A . G 7 HOH 320 720 997 HOH HOH A . G 7 HOH 321 721 999 HOH HOH A . G 7 HOH 322 722 1004 HOH HOH A . G 7 HOH 323 723 1005 HOH HOH A . G 7 HOH 324 724 1006 HOH HOH A . G 7 HOH 325 725 1008 HOH HOH A . G 7 HOH 326 726 1009 HOH HOH A . G 7 HOH 327 727 1011 HOH HOH A . G 7 HOH 328 728 1012 HOH HOH A . G 7 HOH 329 729 1013 HOH HOH A . G 7 HOH 330 730 1014 HOH HOH A . G 7 HOH 331 731 1016 HOH HOH A . G 7 HOH 332 732 1017 HOH HOH A . G 7 HOH 333 733 1018 HOH HOH A . G 7 HOH 334 734 1019 HOH HOH A . G 7 HOH 335 735 1020 HOH HOH A . G 7 HOH 336 736 1021 HOH HOH A . G 7 HOH 337 737 1022 HOH HOH A . G 7 HOH 338 738 1026 HOH HOH A . G 7 HOH 339 739 1027 HOH HOH A . G 7 HOH 340 740 1028 HOH HOH A . G 7 HOH 341 741 1030 HOH HOH A . G 7 HOH 342 742 1031 HOH HOH A . G 7 HOH 343 743 1032 HOH HOH A . G 7 HOH 344 744 1033 HOH HOH A . G 7 HOH 345 745 1036 HOH HOH A . G 7 HOH 346 746 1037 HOH HOH A . G 7 HOH 347 747 1038 HOH HOH A . G 7 HOH 348 748 1039 HOH HOH A . G 7 HOH 349 749 1052 HOH HOH A . G 7 HOH 350 750 1053 HOH HOH A . G 7 HOH 351 751 1054 HOH HOH A . G 7 HOH 352 752 1055 HOH HOH A . G 7 HOH 353 753 1056 HOH HOH A . G 7 HOH 354 754 1057 HOH HOH A . G 7 HOH 355 755 1058 HOH HOH A . G 7 HOH 356 756 1059 HOH HOH A . G 7 HOH 357 757 1060 HOH HOH A . G 7 HOH 358 758 1061 HOH HOH A . G 7 HOH 359 759 1062 HOH HOH A . G 7 HOH 360 760 1063 HOH HOH A . G 7 HOH 361 761 1064 HOH HOH A . G 7 HOH 362 762 1065 HOH HOH A . G 7 HOH 363 763 1066 HOH HOH A . G 7 HOH 364 764 1067 HOH HOH A . H 7 HOH 1 201 53 HOH HOH B . H 7 HOH 2 202 81 HOH HOH B . H 7 HOH 3 203 95 HOH HOH B . H 7 HOH 4 204 97 HOH HOH B . H 7 HOH 5 205 679 HOH HOH B . H 7 HOH 6 206 680 HOH HOH B . H 7 HOH 7 207 683 HOH HOH B . H 7 HOH 8 208 684 HOH HOH B . H 7 HOH 9 209 693 HOH HOH B . H 7 HOH 10 210 698 HOH HOH B . H 7 HOH 11 211 699 HOH HOH B . H 7 HOH 12 212 700 HOH HOH B . H 7 HOH 13 213 701 HOH HOH B . H 7 HOH 14 214 702 HOH HOH B . H 7 HOH 15 215 703 HOH HOH B . H 7 HOH 16 216 757 HOH HOH B . H 7 HOH 17 217 758 HOH HOH B . H 7 HOH 18 218 770 HOH HOH B . H 7 HOH 19 219 771 HOH HOH B . H 7 HOH 20 220 778 HOH HOH B . H 7 HOH 21 221 779 HOH HOH B . H 7 HOH 22 222 780 HOH HOH B . H 7 HOH 23 223 782 HOH HOH B . H 7 HOH 24 224 784 HOH HOH B . H 7 HOH 25 225 785 HOH HOH B . H 7 HOH 26 226 794 HOH HOH B . H 7 HOH 27 227 795 HOH HOH B . H 7 HOH 28 228 796 HOH HOH B . H 7 HOH 29 229 856 HOH HOH B . H 7 HOH 30 230 857 HOH HOH B . H 7 HOH 31 231 858 HOH HOH B . H 7 HOH 32 232 860 HOH HOH B . H 7 HOH 33 233 865 HOH HOH B . H 7 HOH 34 234 867 HOH HOH B . H 7 HOH 35 235 868 HOH HOH B . H 7 HOH 36 236 870 HOH HOH B . H 7 HOH 37 237 871 HOH HOH B . H 7 HOH 38 238 873 HOH HOH B . H 7 HOH 39 239 874 HOH HOH B . H 7 HOH 40 240 875 HOH HOH B . H 7 HOH 41 241 876 HOH HOH B . H 7 HOH 42 242 877 HOH HOH B . H 7 HOH 43 243 878 HOH HOH B . H 7 HOH 44 244 879 HOH HOH B . H 7 HOH 45 245 880 HOH HOH B . H 7 HOH 46 246 881 HOH HOH B . H 7 HOH 47 247 884 HOH HOH B . H 7 HOH 48 248 885 HOH HOH B . H 7 HOH 49 249 890 HOH HOH B . H 7 HOH 50 250 892 HOH HOH B . H 7 HOH 51 251 894 HOH HOH B . H 7 HOH 52 252 898 HOH HOH B . H 7 HOH 53 253 948 HOH HOH B . H 7 HOH 54 254 949 HOH HOH B . H 7 HOH 55 255 951 HOH HOH B . H 7 HOH 56 256 955 HOH HOH B . H 7 HOH 57 257 990 HOH HOH B . H 7 HOH 58 258 1007 HOH HOH B . H 7 HOH 59 259 1010 HOH HOH B . H 7 HOH 60 260 1068 HOH HOH B . I 7 HOH 1 101 760 HOH HOH C . I 7 HOH 2 102 848 HOH HOH C . I 7 HOH 3 103 759 HOH HOH C . I 7 HOH 4 104 762 HOH HOH C . I 7 HOH 5 105 763 HOH HOH C . I 7 HOH 6 106 764 HOH HOH C . I 7 HOH 7 107 767 HOH HOH C . I 7 HOH 8 108 768 HOH HOH C . I 7 HOH 9 109 786 HOH HOH C . I 7 HOH 10 110 827 HOH HOH C . I 7 HOH 11 111 829 HOH HOH C . I 7 HOH 12 112 830 HOH HOH C . I 7 HOH 13 113 832 HOH HOH C . I 7 HOH 14 114 833 HOH HOH C . I 7 HOH 15 115 834 HOH HOH C . I 7 HOH 16 116 835 HOH HOH C . I 7 HOH 17 117 837 HOH HOH C . I 7 HOH 18 118 841 HOH HOH C . I 7 HOH 19 119 855 HOH HOH C . I 7 HOH 20 120 861 HOH HOH C . I 7 HOH 21 121 862 HOH HOH C . I 7 HOH 22 122 866 HOH HOH C . I 7 HOH 23 123 882 HOH HOH C . I 7 HOH 24 124 883 HOH HOH C . I 7 HOH 25 125 886 HOH HOH C . I 7 HOH 26 126 887 HOH HOH C . I 7 HOH 27 127 888 HOH HOH C . I 7 HOH 28 128 889 HOH HOH C . I 7 HOH 29 129 891 HOH HOH C . I 7 HOH 30 130 893 HOH HOH C . I 7 HOH 31 131 895 HOH HOH C . I 7 HOH 32 132 897 HOH HOH C . I 7 HOH 33 133 950 HOH HOH C . I 7 HOH 34 134 952 HOH HOH C . I 7 HOH 35 135 954 HOH HOH C . I 7 HOH 36 136 956 HOH HOH C . I 7 HOH 37 137 957 HOH HOH C . I 7 HOH 38 138 958 HOH HOH C . I 7 HOH 39 139 1023 HOH HOH C . I 7 HOH 40 140 1024 HOH HOH C . I 7 HOH 41 141 1025 HOH HOH C . I 7 HOH 42 142 1034 HOH HOH C . I 7 HOH 43 143 1035 HOH HOH C . I 7 HOH 44 144 1044 HOH HOH C . I 7 HOH 45 145 1045 HOH HOH C . I 7 HOH 46 146 1046 HOH HOH C . I 7 HOH 47 147 1050 HOH HOH C . I 7 HOH 48 148 1051 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ARG 73 ? CG ? A ARG 62 CG 2 1 Y 0 A ARG 73 ? CD ? A ARG 62 CD 3 1 Y 0 A ARG 73 ? NE ? A ARG 62 NE 4 1 Y 0 A ARG 73 ? CZ ? A ARG 62 CZ 5 1 Y 0 A ARG 73 ? NH1 ? A ARG 62 NH1 6 1 Y 0 A ARG 73 ? NH2 ? A ARG 62 NH2 7 1 Y 1 C DT 8 ? N1 ? C DT 8 N1 8 1 Y 1 C DT 8 ? C2 ? C DT 8 C2 9 1 Y 1 C DT 8 ? O2 ? C DT 8 O2 10 1 Y 1 C DT 8 ? N3 ? C DT 8 N3 11 1 Y 1 C DT 8 ? C4 ? C DT 8 C4 12 1 Y 1 C DT 8 ? O4 ? C DT 8 O4 13 1 Y 1 C DT 8 ? C5 ? C DT 8 C5 14 1 Y 1 C DT 8 ? C7 ? C DT 8 C7 15 1 Y 1 C DT 8 ? C6 ? C DT 8 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 REFMAC refinement 5.7.0029 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 REFMAC phasing 5.7.0029 ? 5 # _cell.entry_id 4NIH _cell.length_a 41.072 _cell.length_b 76.369 _cell.length_c 53.178 _cell.angle_alpha 90.00 _cell.angle_beta 108.98 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NIH _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.entry_id 4NIH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_percent_sol 52.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;20% PEG4000, 0.1 M sodium chloride, 0.05 M magnesium chloride, 0.1 M cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 200.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-01-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97 # _reflns.entry_id 4NIH _reflns.observed_criterion_sigma_I 2.2 _reflns.observed_criterion_sigma_F 2.2 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.374 _reflns.number_obs 59661 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.374 _reflns_shell.d_res_low 1.43 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4NIH _refine.ls_number_reflns_obs 59661 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.24 _refine.ls_d_res_high 1.374 _refine.ls_percent_reflns_obs 97.34 _refine.ls_R_factor_obs 0.15987 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15881 _refine.ls_R_factor_R_free 0.18003 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 3178 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.976 _refine.correlation_coeff_Fo_to_Fc_free 0.968 _refine.B_iso_mean 18.700 _refine.aniso_B[1][1] -1.35 _refine.aniso_B[2][2] -0.89 _refine.aniso_B[3][3] 1.78 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.12 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3BIE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.052 _refine.pdbx_overall_ESU_R_Free 0.054 _refine.overall_SU_ML 0.039 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.834 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1570 _refine_hist.pdbx_number_atoms_nucleic_acid 506 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 472 _refine_hist.number_atoms_total 2565 _refine_hist.d_res_high 1.374 _refine_hist.d_res_low 27.24 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.007 0.017 ? 2311 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.002 0.020 ? 1947 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.337 1.771 ? 3258 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.250 3.000 ? 4502 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.398 5.000 ? 228 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 37.375 23.418 ? 79 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 11.589 15.000 ? 275 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 13.530 15.000 ? 12 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.083 0.200 ? 328 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.021 ? 2348 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.002 0.020 ? 551 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.374 _refine_ls_shell.d_res_low 1.409 _refine_ls_shell.number_reflns_R_work 3719 _refine_ls_shell.R_factor_R_work 0.300 _refine_ls_shell.percent_reflns_obs 82.73 _refine_ls_shell.R_factor_R_free 0.299 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 195 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4NIH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4NIH _struct.title 'Crystal structure of AlkB E136L mutant protein with cofactors bound to dsDNA containing m6A/A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NIH _struct_keywords.pdbx_keywords OXIDOREDUCTASE/DNA _struct_keywords.text 'DNA/RNA direct repair, jelly-roll fold, DNA/RNA demethylation repair, Fe(II), 2-KG, OXIDOREDUCTASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ALKB_ECOLI P05050 1 ;QEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPA MPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLE HGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE ; 12 ? 2 PDB 4NIH 4NIH 2 'TAGGTAA(6MA)A(2YR)CGT' 1 ? 3 PDB 4NIH 4NIH 3 AACGGTATTACCT 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4NIH A 1 ? 205 ? P05050 12 ? 216 ? 12 216 2 2 4NIH B 1 ? 13 ? 4NIH 1 ? 13 ? 1 13 3 3 4NIH C 1 ? 13 ? 4NIH 1 ? 13 ? 1 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4NIH CYS A 118 ? UNP P05050 SER 129 'engineered mutation' 129 1 1 4NIH LEU A 125 ? UNP P05050 GLU 136 'engineered mutation' 136 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4550 ? 1 MORE -6 ? 1 'SSA (A^2)' 12430 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 18 ? SER A 33 ? ALA A 29 SER A 44 1 ? 16 HELX_P HELX_P2 2 PRO A 82 ? ALA A 96 ? PRO A 93 ALA A 107 1 ? 15 HELX_P HELX_P3 3 GLY A 168 ? ARG A 172 ? GLY A 179 ARG A 183 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CYS 118 SG ? ? ? 1_555 B 2YR 10 S ? ? A CYS 129 B 2YR 10 1_555 ? ? ? ? ? ? ? 2.179 ? ? covale2 covale both ? B DA 7 "O3'" ? ? ? 1_555 B 6MA 8 P ? ? B DA 7 B 6MA 8 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale3 covale both ? B 6MA 8 "O3'" ? ? ? 1_555 B DA 9 P ? ? B 6MA 8 B DA 9 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale4 covale both ? B DA 9 "O3'" ? ? ? 1_555 B 2YR 10 P ? ? B DA 9 B 2YR 10 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale5 covale both ? B 2YR 10 "O3'" ? ? ? 1_555 B DC 11 P ? ? B 2YR 10 B DC 11 1_555 ? ? ? ? ? ? ? 1.595 ? ? metalc1 metalc ? ? A HIS 120 NE2 ? ? ? 1_555 D MN . MN ? ? A HIS 131 A MN 301 1_555 ? ? ? ? ? ? ? 2.259 ? ? metalc2 metalc ? ? A ASP 122 OD1 ? ? ? 1_555 D MN . MN ? ? A ASP 133 A MN 301 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc3 metalc ? ? A HIS 176 NE2 ? ? ? 1_555 D MN . MN ? ? A HIS 187 A MN 301 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc4 metalc ? ? D MN . MN ? ? ? 1_555 E AKG . O1 ? ? A MN 301 A AKG 302 1_555 ? ? ? ? ? ? ? 2.155 ? ? metalc5 metalc ? ? D MN . MN ? ? ? 1_555 E AKG . O5 ? ? A MN 301 A AKG 302 1_555 ? ? ? ? ? ? ? 2.306 ? ? metalc6 metalc ? ? D MN . MN ? ? ? 1_555 G HOH . O ? ? A MN 301 A HOH 411 1_555 ? ? ? ? ? ? ? 2.347 ? ? hydrog1 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 13 N3 ? ? B DA 2 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 13 O4 ? ? B DA 2 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 11 N3 ? ? B DG 4 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 11 O2 ? ? B DG 4 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 11 N4 ? ? B DG 4 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 6 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 6 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 9 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 9 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 9 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 4 N1 ? ? B DC 11 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 4 O6 ? ? B DC 11 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 4 N2 ? ? B DC 11 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 12 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 12 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 12 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 13 N3 ? ? ? 1_555 C DA 2 N1 ? ? B DT 13 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 13 O4 ? ? ? 1_555 C DA 2 N6 ? ? B DT 13 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 120 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 OD1 ? A ASP 122 ? A ASP 133 ? 1_555 96.1 ? 2 NE2 ? A HIS 120 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 NE2 ? A HIS 176 ? A HIS 187 ? 1_555 88.9 ? 3 OD1 ? A ASP 122 ? A ASP 133 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 NE2 ? A HIS 176 ? A HIS 187 ? 1_555 93.7 ? 4 NE2 ? A HIS 120 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O1 ? E AKG . ? A AKG 302 ? 1_555 97.0 ? 5 OD1 ? A ASP 122 ? A ASP 133 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O1 ? E AKG . ? A AKG 302 ? 1_555 106.3 ? 6 NE2 ? A HIS 176 ? A HIS 187 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O1 ? E AKG . ? A AKG 302 ? 1_555 158.4 ? 7 NE2 ? A HIS 120 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O5 ? E AKG . ? A AKG 302 ? 1_555 92.1 ? 8 OD1 ? A ASP 122 ? A ASP 133 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O5 ? E AKG . ? A AKG 302 ? 1_555 171.7 ? 9 NE2 ? A HIS 176 ? A HIS 187 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O5 ? E AKG . ? A AKG 302 ? 1_555 87.4 ? 10 O1 ? E AKG . ? A AKG 302 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O5 ? E AKG . ? A AKG 302 ? 1_555 71.7 ? 11 NE2 ? A HIS 120 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O ? G HOH . ? A HOH 411 ? 1_555 176.8 ? 12 OD1 ? A ASP 122 ? A ASP 133 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O ? G HOH . ? A HOH 411 ? 1_555 85.2 ? 13 NE2 ? A HIS 176 ? A HIS 187 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O ? G HOH . ? A HOH 411 ? 1_555 88.1 ? 14 O1 ? E AKG . ? A AKG 302 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O ? G HOH . ? A HOH 411 ? 1_555 85.5 ? 15 O5 ? E AKG . ? A AKG 302 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O ? G HOH . ? A HOH 411 ? 1_555 86.7 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id 2YR _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id 10 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 118 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id 2YR _pdbx_modification_feature.auth_asym_id B _pdbx_modification_feature.auth_seq_id 10 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 129 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom S _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id CYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id 2YR _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Covalent chemical modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 9 ? LEU A 11 ? VAL A 20 LEU A 22 A 2 VAL A 164 ? TRP A 167 ? VAL A 175 TRP A 178 A 3 ILE A 132 ? GLY A 138 ? ILE A 143 GLY A 149 A 4 ARG A 193 ? PHE A 198 ? ARG A 204 PHE A 209 A 5 ALA A 105 ? TYR A 111 ? ALA A 116 TYR A 122 A 6 ALA A 49 ? GLY A 54 ? ALA A 60 GLY A 65 B 1 GLY A 57 ? HIS A 61 ? GLY A 68 HIS A 72 B 2 GLY A 64 ? SER A 68 ? GLY A 75 SER A 79 C 1 LEU A 117 ? HIS A 120 ? LEU A 128 HIS A 131 C 2 HIS A 176 ? ILE A 178 ? HIS A 187 ILE A 189 C 3 ALA A 141 ? PHE A 145 ? ALA A 152 PHE A 156 C 4 LYS A 155 ? LEU A 159 ? LYS A 166 LEU A 170 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 11 ? N LEU A 22 O VAL A 164 ? O VAL A 175 A 2 3 O TRP A 167 ? O TRP A 178 N ILE A 132 ? N ILE A 143 A 3 4 N VAL A 133 ? N VAL A 144 O PHE A 198 ? O PHE A 209 A 4 5 O ARG A 193 ? O ARG A 204 N TYR A 111 ? N TYR A 122 A 5 6 O ILE A 108 ? O ILE A 119 N THR A 51 ? N THR A 62 B 1 2 N THR A 59 ? N THR A 70 O LEU A 66 ? O LEU A 77 C 1 2 N HIS A 120 ? N HIS A 131 O HIS A 176 ? O HIS A 187 C 2 3 O GLY A 177 ? O GLY A 188 N GLN A 144 ? N GLN A 155 C 3 4 N ALA A 141 ? N ALA A 152 O LEU A 159 ? O LEU A 170 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 301 ? 5 'BINDING SITE FOR RESIDUE MN A 301' AC2 Software A AKG 302 ? 16 'BINDING SITE FOR RESIDUE AKG A 302' AC3 Software A GOL 303 ? 5 'BINDING SITE FOR RESIDUE GOL A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 120 ? HIS A 131 . ? 1_555 ? 2 AC1 5 ASP A 122 ? ASP A 133 . ? 1_555 ? 3 AC1 5 HIS A 176 ? HIS A 187 . ? 1_555 ? 4 AC1 5 AKG E . ? AKG A 302 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH A 411 . ? 1_555 ? 6 AC2 16 LEU A 107 ? LEU A 118 . ? 1_555 ? 7 AC2 16 ASN A 109 ? ASN A 120 . ? 1_555 ? 8 AC2 16 TYR A 111 ? TYR A 122 . ? 1_555 ? 9 AC2 16 LEU A 117 ? LEU A 128 . ? 1_555 ? 10 AC2 16 HIS A 120 ? HIS A 131 . ? 1_555 ? 11 AC2 16 ASP A 122 ? ASP A 133 . ? 1_555 ? 12 AC2 16 HIS A 176 ? HIS A 187 . ? 1_555 ? 13 AC2 16 ILE A 178 ? ILE A 189 . ? 1_555 ? 14 AC2 16 ARG A 193 ? ARG A 204 . ? 1_555 ? 15 AC2 16 ASN A 195 ? ASN A 206 . ? 1_555 ? 16 AC2 16 THR A 197 ? THR A 208 . ? 1_555 ? 17 AC2 16 MN D . ? MN A 301 . ? 1_555 ? 18 AC2 16 HOH G . ? HOH A 402 . ? 1_555 ? 19 AC2 16 HOH G . ? HOH A 403 . ? 1_555 ? 20 AC2 16 HOH G . ? HOH A 411 . ? 1_555 ? 21 AC2 16 6MA B 8 ? 6MA B 8 . ? 1_555 ? 22 AC3 5 ILE A 23 ? ILE A 34 . ? 1_555 ? 23 AC3 5 ASN A 27 ? ASN A 38 . ? 1_555 ? 24 AC3 5 LEU A 188 ? LEU A 199 . ? 1_555 ? 25 AC3 5 THR A 189 ? THR A 200 . ? 1_555 ? 26 AC3 5 TYR A 194 ? TYR A 205 . ? 1_555 ? # _pdbx_entry_details.entry_id 4NIH _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 C DG 5 ? ? O C HOH 113 ? ? 2.02 2 1 NE2 A GLN 101 ? A O A HOH 559 ? ? 2.07 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 DA _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 DA _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 DA _pdbx_validate_rmsd_angle.auth_seq_id_3 1 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.55 _pdbx_validate_rmsd_angle.angle_target_value 109.80 _pdbx_validate_rmsd_angle.angle_deviation 7.75 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 72 ? ? -171.47 -172.29 2 1 ILE A 201 ? ? 70.68 -70.81 3 1 ASP A 202 ? ? -140.25 21.24 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id 6MA _pdbx_struct_mod_residue.label_seq_id 8 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id 6MA _pdbx_struct_mod_residue.auth_seq_id 8 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 21.6378 1.9265 76.3090 0.0206 0.0334 0.0045 -0.0024 -0.0011 0.0044 0.2429 0.3279 0.0526 -0.0024 -0.0228 0.0987 0.0015 -0.0042 0.0171 -0.0138 0.0032 0.0072 0.0044 0.0099 -0.0047 'X-RAY DIFFRACTION' 2 ? refined 12.0255 -7.5304 51.7774 0.0756 0.0512 0.1056 0.0078 0.0171 -0.0017 2.1331 1.3935 3.6285 0.1075 0.3222 1.7940 0.1128 0.2323 -0.0647 0.0095 0.0757 0.1046 -0.1747 0.1556 -0.1885 'X-RAY DIFFRACTION' 3 ? refined 26.7980 -16.1253 64.1388 0.0284 0.0385 0.0079 0.0083 -0.0087 -0.0029 0.5709 0.6506 0.0308 -0.3595 -0.1144 0.1258 0.0490 0.0372 -0.0453 -0.0229 -0.0550 0.0109 -0.0120 -0.0076 0.0060 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 14 ? ? A 213 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 2 ? ? B 5 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 C 10 ? ? C 13 ? ? ? ? 'X-RAY DIFFRACTION' 4 3 B 6 ? ? B 13 ? ? ? ? 'X-RAY DIFFRACTION' 5 3 C 1 ? ? C 9 ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 12 ? A GLN 1 2 1 Y 1 A GLU 13 ? A GLU 2 3 1 Y 1 A LYS 215 ? A LYS 204 4 1 Y 1 A GLU 216 ? A GLU 205 5 1 Y 1 B DT 1 ? B DT 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2YR P P N N 1 2YR OP1 O N N 2 2YR OP2 O N N 3 2YR "O5'" O N N 4 2YR "C5'" C N N 5 2YR "C4'" C N R 6 2YR "O4'" O N N 7 2YR "C3'" C N S 8 2YR "O3'" O N N 9 2YR "C2'" C N N 10 2YR "C1'" C N R 11 2YR N1 N N N 12 2YR C2 C N N 13 2YR O2 O N N 14 2YR N3 N N N 15 2YR C4 C N N 16 2YR N4 N N N 17 2YR C5 C N N 18 2YR C6 C N N 19 2YR S S N N 20 2YR C8 C N N 21 2YR C9 C N N 22 2YR H2 H N N 23 2YR H3 H N N 24 2YR H4 H N N 25 2YR H5 H N N 26 2YR H6 H N N 27 2YR H7 H N N 28 2YR H8 H N N 29 2YR H9 H N N 30 2YR H10 H N N 31 2YR H11 H N N 32 2YR H12 H N N 33 2YR H13 H N N 34 2YR H14 H N N 35 2YR H15 H N N 36 2YR H16 H N N 37 2YR H17 H N N 38 2YR H18 H N N 39 2YR OP3 O N N 40 2YR H20 H N N 41 6MA OP3 O N N 42 6MA P P N N 43 6MA OP1 O N N 44 6MA OP2 O N N 45 6MA "O5'" O N N 46 6MA "C5'" C N N 47 6MA "C4'" C N R 48 6MA "O4'" O N N 49 6MA "C3'" C N S 50 6MA "O3'" O N N 51 6MA "C2'" C N N 52 6MA "C1'" C N R 53 6MA N9 N Y N 54 6MA C8 C Y N 55 6MA N7 N Y N 56 6MA C5 C Y N 57 6MA C6 C Y N 58 6MA N1 N Y N 59 6MA C2 C Y N 60 6MA N3 N Y N 61 6MA C4 C Y N 62 6MA N6 N N N 63 6MA C1 C N N 64 6MA HOP3 H N N 65 6MA HOP2 H N N 66 6MA "H5'" H N N 67 6MA "H5''" H N N 68 6MA "H4'" H N N 69 6MA "H3'" H N N 70 6MA "HO3'" H N N 71 6MA "H2'" H N N 72 6MA "H2''" H N N 73 6MA "H1'" H N N 74 6MA H8 H N N 75 6MA H2 H N N 76 6MA H61 H N N 77 6MA H11 H N N 78 6MA H12 H N N 79 6MA H13 H N N 80 AKG C1 C N N 81 AKG O1 O N N 82 AKG O2 O N N 83 AKG C2 C N N 84 AKG O5 O N N 85 AKG C3 C N N 86 AKG C4 C N N 87 AKG C5 C N N 88 AKG O3 O N N 89 AKG O4 O N N 90 AKG HO2 H N N 91 AKG H31 H N N 92 AKG H32 H N N 93 AKG H41 H N N 94 AKG H42 H N N 95 AKG HO4 H N N 96 ALA N N N N 97 ALA CA C N S 98 ALA C C N N 99 ALA O O N N 100 ALA CB C N N 101 ALA OXT O N N 102 ALA H H N N 103 ALA H2 H N N 104 ALA HA H N N 105 ALA HB1 H N N 106 ALA HB2 H N N 107 ALA HB3 H N N 108 ALA HXT H N N 109 ARG N N N N 110 ARG CA C N S 111 ARG C C N N 112 ARG O O N N 113 ARG CB C N N 114 ARG CG C N N 115 ARG CD C N N 116 ARG NE N N N 117 ARG CZ C N N 118 ARG NH1 N N N 119 ARG NH2 N N N 120 ARG OXT O N N 121 ARG H H N N 122 ARG H2 H N N 123 ARG HA H N N 124 ARG HB2 H N N 125 ARG HB3 H N N 126 ARG HG2 H N N 127 ARG HG3 H N N 128 ARG HD2 H N N 129 ARG HD3 H N N 130 ARG HE H N N 131 ARG HH11 H N N 132 ARG HH12 H N N 133 ARG HH21 H N N 134 ARG HH22 H N N 135 ARG HXT H N N 136 ASN N N N N 137 ASN CA C N S 138 ASN C C N N 139 ASN O O N N 140 ASN CB C N N 141 ASN CG C N N 142 ASN OD1 O N N 143 ASN ND2 N N N 144 ASN OXT O N N 145 ASN H H N N 146 ASN H2 H N N 147 ASN HA H N N 148 ASN HB2 H N N 149 ASN HB3 H N N 150 ASN HD21 H N N 151 ASN HD22 H N N 152 ASN HXT H N N 153 ASP N N N N 154 ASP CA C N S 155 ASP C C N N 156 ASP O O N N 157 ASP CB C N N 158 ASP CG C N N 159 ASP OD1 O N N 160 ASP OD2 O N N 161 ASP OXT O N N 162 ASP H H N N 163 ASP H2 H N N 164 ASP HA H N N 165 ASP HB2 H N N 166 ASP HB3 H N N 167 ASP HD2 H N N 168 ASP HXT H N N 169 CYS N N N N 170 CYS CA C N R 171 CYS C C N N 172 CYS O O N N 173 CYS CB C N N 174 CYS SG S N N 175 CYS OXT O N N 176 CYS H H N N 177 CYS H2 H N N 178 CYS HA H N N 179 CYS HB2 H N N 180 CYS HB3 H N N 181 CYS HG H N N 182 CYS HXT H N N 183 DA OP3 O N N 184 DA P P N N 185 DA OP1 O N N 186 DA OP2 O N N 187 DA "O5'" O N N 188 DA "C5'" C N N 189 DA "C4'" C N R 190 DA "O4'" O N N 191 DA "C3'" C N S 192 DA "O3'" O N N 193 DA "C2'" C N N 194 DA "C1'" C N R 195 DA N9 N Y N 196 DA C8 C Y N 197 DA N7 N Y N 198 DA C5 C Y N 199 DA C6 C Y N 200 DA N6 N N N 201 DA N1 N Y N 202 DA C2 C Y N 203 DA N3 N Y N 204 DA C4 C Y N 205 DA HOP3 H N N 206 DA HOP2 H N N 207 DA "H5'" H N N 208 DA "H5''" H N N 209 DA "H4'" H N N 210 DA "H3'" H N N 211 DA "HO3'" H N N 212 DA "H2'" H N N 213 DA "H2''" H N N 214 DA "H1'" H N N 215 DA H8 H N N 216 DA H61 H N N 217 DA H62 H N N 218 DA H2 H N N 219 DC OP3 O N N 220 DC P P N N 221 DC OP1 O N N 222 DC OP2 O N N 223 DC "O5'" O N N 224 DC "C5'" C N N 225 DC "C4'" C N R 226 DC "O4'" O N N 227 DC "C3'" C N S 228 DC "O3'" O N N 229 DC "C2'" C N N 230 DC "C1'" C N R 231 DC N1 N N N 232 DC C2 C N N 233 DC O2 O N N 234 DC N3 N N N 235 DC C4 C N N 236 DC N4 N N N 237 DC C5 C N N 238 DC C6 C N N 239 DC HOP3 H N N 240 DC HOP2 H N N 241 DC "H5'" H N N 242 DC "H5''" H N N 243 DC "H4'" H N N 244 DC "H3'" H N N 245 DC "HO3'" H N N 246 DC "H2'" H N N 247 DC "H2''" H N N 248 DC "H1'" H N N 249 DC H41 H N N 250 DC H42 H N N 251 DC H5 H N N 252 DC H6 H N N 253 DG OP3 O N N 254 DG P P N N 255 DG OP1 O N N 256 DG OP2 O N N 257 DG "O5'" O N N 258 DG "C5'" C N N 259 DG "C4'" C N R 260 DG "O4'" O N N 261 DG "C3'" C N S 262 DG "O3'" O N N 263 DG "C2'" C N N 264 DG "C1'" C N R 265 DG N9 N Y N 266 DG C8 C Y N 267 DG N7 N Y N 268 DG C5 C Y N 269 DG C6 C N N 270 DG O6 O N N 271 DG N1 N N N 272 DG C2 C N N 273 DG N2 N N N 274 DG N3 N N N 275 DG C4 C Y N 276 DG HOP3 H N N 277 DG HOP2 H N N 278 DG "H5'" H N N 279 DG "H5''" H N N 280 DG "H4'" H N N 281 DG "H3'" H N N 282 DG "HO3'" H N N 283 DG "H2'" H N N 284 DG "H2''" H N N 285 DG "H1'" H N N 286 DG H8 H N N 287 DG H1 H N N 288 DG H21 H N N 289 DG H22 H N N 290 DT OP3 O N N 291 DT P P N N 292 DT OP1 O N N 293 DT OP2 O N N 294 DT "O5'" O N N 295 DT "C5'" C N N 296 DT "C4'" C N R 297 DT "O4'" O N N 298 DT "C3'" C N S 299 DT "O3'" O N N 300 DT "C2'" C N N 301 DT "C1'" C N R 302 DT N1 N N N 303 DT C2 C N N 304 DT O2 O N N 305 DT N3 N N N 306 DT C4 C N N 307 DT O4 O N N 308 DT C5 C N N 309 DT C7 C N N 310 DT C6 C N N 311 DT HOP3 H N N 312 DT HOP2 H N N 313 DT "H5'" H N N 314 DT "H5''" H N N 315 DT "H4'" H N N 316 DT "H3'" H N N 317 DT "HO3'" H N N 318 DT "H2'" H N N 319 DT "H2''" H N N 320 DT "H1'" H N N 321 DT H3 H N N 322 DT H71 H N N 323 DT H72 H N N 324 DT H73 H N N 325 DT H6 H N N 326 GLN N N N N 327 GLN CA C N S 328 GLN C C N N 329 GLN O O N N 330 GLN CB C N N 331 GLN CG C N N 332 GLN CD C N N 333 GLN OE1 O N N 334 GLN NE2 N N N 335 GLN OXT O N N 336 GLN H H N N 337 GLN H2 H N N 338 GLN HA H N N 339 GLN HB2 H N N 340 GLN HB3 H N N 341 GLN HG2 H N N 342 GLN HG3 H N N 343 GLN HE21 H N N 344 GLN HE22 H N N 345 GLN HXT H N N 346 GLU N N N N 347 GLU CA C N S 348 GLU C C N N 349 GLU O O N N 350 GLU CB C N N 351 GLU CG C N N 352 GLU CD C N N 353 GLU OE1 O N N 354 GLU OE2 O N N 355 GLU OXT O N N 356 GLU H H N N 357 GLU H2 H N N 358 GLU HA H N N 359 GLU HB2 H N N 360 GLU HB3 H N N 361 GLU HG2 H N N 362 GLU HG3 H N N 363 GLU HE2 H N N 364 GLU HXT H N N 365 GLY N N N N 366 GLY CA C N N 367 GLY C C N N 368 GLY O O N N 369 GLY OXT O N N 370 GLY H H N N 371 GLY H2 H N N 372 GLY HA2 H N N 373 GLY HA3 H N N 374 GLY HXT H N N 375 GOL C1 C N N 376 GOL O1 O N N 377 GOL C2 C N N 378 GOL O2 O N N 379 GOL C3 C N N 380 GOL O3 O N N 381 GOL H11 H N N 382 GOL H12 H N N 383 GOL HO1 H N N 384 GOL H2 H N N 385 GOL HO2 H N N 386 GOL H31 H N N 387 GOL H32 H N N 388 GOL HO3 H N N 389 HIS N N N N 390 HIS CA C N S 391 HIS C C N N 392 HIS O O N N 393 HIS CB C N N 394 HIS CG C Y N 395 HIS ND1 N Y N 396 HIS CD2 C Y N 397 HIS CE1 C Y N 398 HIS NE2 N Y N 399 HIS OXT O N N 400 HIS H H N N 401 HIS H2 H N N 402 HIS HA H N N 403 HIS HB2 H N N 404 HIS HB3 H N N 405 HIS HD1 H N N 406 HIS HD2 H N N 407 HIS HE1 H N N 408 HIS HE2 H N N 409 HIS HXT H N N 410 HOH O O N N 411 HOH H1 H N N 412 HOH H2 H N N 413 ILE N N N N 414 ILE CA C N S 415 ILE C C N N 416 ILE O O N N 417 ILE CB C N S 418 ILE CG1 C N N 419 ILE CG2 C N N 420 ILE CD1 C N N 421 ILE OXT O N N 422 ILE H H N N 423 ILE H2 H N N 424 ILE HA H N N 425 ILE HB H N N 426 ILE HG12 H N N 427 ILE HG13 H N N 428 ILE HG21 H N N 429 ILE HG22 H N N 430 ILE HG23 H N N 431 ILE HD11 H N N 432 ILE HD12 H N N 433 ILE HD13 H N N 434 ILE HXT H N N 435 LEU N N N N 436 LEU CA C N S 437 LEU C C N N 438 LEU O O N N 439 LEU CB C N N 440 LEU CG C N N 441 LEU CD1 C N N 442 LEU CD2 C N N 443 LEU OXT O N N 444 LEU H H N N 445 LEU H2 H N N 446 LEU HA H N N 447 LEU HB2 H N N 448 LEU HB3 H N N 449 LEU HG H N N 450 LEU HD11 H N N 451 LEU HD12 H N N 452 LEU HD13 H N N 453 LEU HD21 H N N 454 LEU HD22 H N N 455 LEU HD23 H N N 456 LEU HXT H N N 457 LYS N N N N 458 LYS CA C N S 459 LYS C C N N 460 LYS O O N N 461 LYS CB C N N 462 LYS CG C N N 463 LYS CD C N N 464 LYS CE C N N 465 LYS NZ N N N 466 LYS OXT O N N 467 LYS H H N N 468 LYS H2 H N N 469 LYS HA H N N 470 LYS HB2 H N N 471 LYS HB3 H N N 472 LYS HG2 H N N 473 LYS HG3 H N N 474 LYS HD2 H N N 475 LYS HD3 H N N 476 LYS HE2 H N N 477 LYS HE3 H N N 478 LYS HZ1 H N N 479 LYS HZ2 H N N 480 LYS HZ3 H N N 481 LYS HXT H N N 482 MET N N N N 483 MET CA C N S 484 MET C C N N 485 MET O O N N 486 MET CB C N N 487 MET CG C N N 488 MET SD S N N 489 MET CE C N N 490 MET OXT O N N 491 MET H H N N 492 MET H2 H N N 493 MET HA H N N 494 MET HB2 H N N 495 MET HB3 H N N 496 MET HG2 H N N 497 MET HG3 H N N 498 MET HE1 H N N 499 MET HE2 H N N 500 MET HE3 H N N 501 MET HXT H N N 502 MN MN MN N N 503 PHE N N N N 504 PHE CA C N S 505 PHE C C N N 506 PHE O O N N 507 PHE CB C N N 508 PHE CG C Y N 509 PHE CD1 C Y N 510 PHE CD2 C Y N 511 PHE CE1 C Y N 512 PHE CE2 C Y N 513 PHE CZ C Y N 514 PHE OXT O N N 515 PHE H H N N 516 PHE H2 H N N 517 PHE HA H N N 518 PHE HB2 H N N 519 PHE HB3 H N N 520 PHE HD1 H N N 521 PHE HD2 H N N 522 PHE HE1 H N N 523 PHE HE2 H N N 524 PHE HZ H N N 525 PHE HXT H N N 526 PRO N N N N 527 PRO CA C N S 528 PRO C C N N 529 PRO O O N N 530 PRO CB C N N 531 PRO CG C N N 532 PRO CD C N N 533 PRO OXT O N N 534 PRO H H N N 535 PRO HA H N N 536 PRO HB2 H N N 537 PRO HB3 H N N 538 PRO HG2 H N N 539 PRO HG3 H N N 540 PRO HD2 H N N 541 PRO HD3 H N N 542 PRO HXT H N N 543 SER N N N N 544 SER CA C N S 545 SER C C N N 546 SER O O N N 547 SER CB C N N 548 SER OG O N N 549 SER OXT O N N 550 SER H H N N 551 SER H2 H N N 552 SER HA H N N 553 SER HB2 H N N 554 SER HB3 H N N 555 SER HG H N N 556 SER HXT H N N 557 THR N N N N 558 THR CA C N S 559 THR C C N N 560 THR O O N N 561 THR CB C N R 562 THR OG1 O N N 563 THR CG2 C N N 564 THR OXT O N N 565 THR H H N N 566 THR H2 H N N 567 THR HA H N N 568 THR HB H N N 569 THR HG1 H N N 570 THR HG21 H N N 571 THR HG22 H N N 572 THR HG23 H N N 573 THR HXT H N N 574 TRP N N N N 575 TRP CA C N S 576 TRP C C N N 577 TRP O O N N 578 TRP CB C N N 579 TRP CG C Y N 580 TRP CD1 C Y N 581 TRP CD2 C Y N 582 TRP NE1 N Y N 583 TRP CE2 C Y N 584 TRP CE3 C Y N 585 TRP CZ2 C Y N 586 TRP CZ3 C Y N 587 TRP CH2 C Y N 588 TRP OXT O N N 589 TRP H H N N 590 TRP H2 H N N 591 TRP HA H N N 592 TRP HB2 H N N 593 TRP HB3 H N N 594 TRP HD1 H N N 595 TRP HE1 H N N 596 TRP HE3 H N N 597 TRP HZ2 H N N 598 TRP HZ3 H N N 599 TRP HH2 H N N 600 TRP HXT H N N 601 TYR N N N N 602 TYR CA C N S 603 TYR C C N N 604 TYR O O N N 605 TYR CB C N N 606 TYR CG C Y N 607 TYR CD1 C Y N 608 TYR CD2 C Y N 609 TYR CE1 C Y N 610 TYR CE2 C Y N 611 TYR CZ C Y N 612 TYR OH O N N 613 TYR OXT O N N 614 TYR H H N N 615 TYR H2 H N N 616 TYR HA H N N 617 TYR HB2 H N N 618 TYR HB3 H N N 619 TYR HD1 H N N 620 TYR HD2 H N N 621 TYR HE1 H N N 622 TYR HE2 H N N 623 TYR HH H N N 624 TYR HXT H N N 625 VAL N N N N 626 VAL CA C N S 627 VAL C C N N 628 VAL O O N N 629 VAL CB C N N 630 VAL CG1 C N N 631 VAL CG2 C N N 632 VAL OXT O N N 633 VAL H H N N 634 VAL H2 H N N 635 VAL HA H N N 636 VAL HB H N N 637 VAL HG11 H N N 638 VAL HG12 H N N 639 VAL HG13 H N N 640 VAL HG21 H N N 641 VAL HG22 H N N 642 VAL HG23 H N N 643 VAL HXT H N N 644 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2YR S C8 sing N N 1 2YR C8 C9 sing N N 2 2YR N4 C9 sing N N 3 2YR N4 C4 sing N N 4 2YR C4 N3 doub N N 5 2YR C4 C5 sing N N 6 2YR N3 C2 sing N N 7 2YR C5 C6 doub N N 8 2YR C2 O2 doub N N 9 2YR C2 N1 sing N N 10 2YR C6 N1 sing N N 11 2YR N1 "C1'" sing N N 12 2YR "C2'" "C3'" sing N N 13 2YR "C2'" "C1'" sing N N 14 2YR "C3'" "O3'" sing N N 15 2YR "C3'" "C4'" sing N N 16 2YR "C1'" "O4'" sing N N 17 2YR "O4'" "C4'" sing N N 18 2YR "C4'" "C5'" sing N N 19 2YR "C5'" "O5'" sing N N 20 2YR "O5'" P sing N N 21 2YR OP2 P sing N N 22 2YR P OP1 doub N N 23 2YR OP2 H2 sing N N 24 2YR "C5'" H3 sing N N 25 2YR "C5'" H4 sing N N 26 2YR "C4'" H5 sing N N 27 2YR "C3'" H6 sing N N 28 2YR "O3'" H7 sing N N 29 2YR "C2'" H8 sing N N 30 2YR "C2'" H9 sing N N 31 2YR "C1'" H10 sing N N 32 2YR N4 H11 sing N N 33 2YR C5 H12 sing N N 34 2YR C6 H13 sing N N 35 2YR S H14 sing N N 36 2YR C8 H15 sing N N 37 2YR C8 H16 sing N N 38 2YR C9 H17 sing N N 39 2YR C9 H18 sing N N 40 2YR P OP3 sing N N 41 2YR OP3 H20 sing N N 42 6MA OP3 P sing N N 43 6MA OP3 HOP3 sing N N 44 6MA P OP1 doub N N 45 6MA P OP2 sing N N 46 6MA P "O5'" sing N N 47 6MA OP2 HOP2 sing N N 48 6MA "O5'" "C5'" sing N N 49 6MA "C5'" "C4'" sing N N 50 6MA "C5'" "H5'" sing N N 51 6MA "C5'" "H5''" sing N N 52 6MA "C4'" "O4'" sing N N 53 6MA "C4'" "C3'" sing N N 54 6MA "C4'" "H4'" sing N N 55 6MA "O4'" "C1'" sing N N 56 6MA "C3'" "O3'" sing N N 57 6MA "C3'" "C2'" sing N N 58 6MA "C3'" "H3'" sing N N 59 6MA "O3'" "HO3'" sing N N 60 6MA "C2'" "C1'" sing N N 61 6MA "C2'" "H2'" sing N N 62 6MA "C2'" "H2''" sing N N 63 6MA "C1'" N9 sing N N 64 6MA "C1'" "H1'" sing N N 65 6MA N9 C8 sing Y N 66 6MA N9 C4 sing Y N 67 6MA C8 N7 doub Y N 68 6MA C8 H8 sing N N 69 6MA N7 C5 sing Y N 70 6MA C5 C6 sing Y N 71 6MA C5 C4 doub Y N 72 6MA C6 N1 doub Y N 73 6MA C6 N6 sing N N 74 6MA N1 C2 sing Y N 75 6MA C2 N3 doub Y N 76 6MA C2 H2 sing N N 77 6MA N3 C4 sing Y N 78 6MA N6 C1 sing N N 79 6MA N6 H61 sing N N 80 6MA C1 H11 sing N N 81 6MA C1 H12 sing N N 82 6MA C1 H13 sing N N 83 AKG C1 O1 doub N N 84 AKG C1 O2 sing N N 85 AKG C1 C2 sing N N 86 AKG O2 HO2 sing N N 87 AKG C2 O5 doub N N 88 AKG C2 C3 sing N N 89 AKG C3 C4 sing N N 90 AKG C3 H31 sing N N 91 AKG C3 H32 sing N N 92 AKG C4 C5 sing N N 93 AKG C4 H41 sing N N 94 AKG C4 H42 sing N N 95 AKG C5 O3 doub N N 96 AKG C5 O4 sing N N 97 AKG O4 HO4 sing N N 98 ALA N CA sing N N 99 ALA N H sing N N 100 ALA N H2 sing N N 101 ALA CA C sing N N 102 ALA CA CB sing N N 103 ALA CA HA sing N N 104 ALA C O doub N N 105 ALA C OXT sing N N 106 ALA CB HB1 sing N N 107 ALA CB HB2 sing N N 108 ALA CB HB3 sing N N 109 ALA OXT HXT sing N N 110 ARG N CA sing N N 111 ARG N H sing N N 112 ARG N H2 sing N N 113 ARG CA C sing N N 114 ARG CA CB sing N N 115 ARG CA HA sing N N 116 ARG C O doub N N 117 ARG C OXT sing N N 118 ARG CB CG sing N N 119 ARG CB HB2 sing N N 120 ARG CB HB3 sing N N 121 ARG CG CD sing N N 122 ARG CG HG2 sing N N 123 ARG CG HG3 sing N N 124 ARG CD NE sing N N 125 ARG CD HD2 sing N N 126 ARG CD HD3 sing N N 127 ARG NE CZ sing N N 128 ARG NE HE sing N N 129 ARG CZ NH1 sing N N 130 ARG CZ NH2 doub N N 131 ARG NH1 HH11 sing N N 132 ARG NH1 HH12 sing N N 133 ARG NH2 HH21 sing N N 134 ARG NH2 HH22 sing N N 135 ARG OXT HXT sing N N 136 ASN N CA sing N N 137 ASN N H sing N N 138 ASN N H2 sing N N 139 ASN CA C sing N N 140 ASN CA CB sing N N 141 ASN CA HA sing N N 142 ASN C O doub N N 143 ASN C OXT sing N N 144 ASN CB CG sing N N 145 ASN CB HB2 sing N N 146 ASN CB HB3 sing N N 147 ASN CG OD1 doub N N 148 ASN CG ND2 sing N N 149 ASN ND2 HD21 sing N N 150 ASN ND2 HD22 sing N N 151 ASN OXT HXT sing N N 152 ASP N CA sing N N 153 ASP N H sing N N 154 ASP N H2 sing N N 155 ASP CA C sing N N 156 ASP CA CB sing N N 157 ASP CA HA sing N N 158 ASP C O doub N N 159 ASP C OXT sing N N 160 ASP CB CG sing N N 161 ASP CB HB2 sing N N 162 ASP CB HB3 sing N N 163 ASP CG OD1 doub N N 164 ASP CG OD2 sing N N 165 ASP OD2 HD2 sing N N 166 ASP OXT HXT sing N N 167 CYS N CA sing N N 168 CYS N H sing N N 169 CYS N H2 sing N N 170 CYS CA C sing N N 171 CYS CA CB sing N N 172 CYS CA HA sing N N 173 CYS C O doub N N 174 CYS C OXT sing N N 175 CYS CB SG sing N N 176 CYS CB HB2 sing N N 177 CYS CB HB3 sing N N 178 CYS SG HG sing N N 179 CYS OXT HXT sing N N 180 DA OP3 P sing N N 181 DA OP3 HOP3 sing N N 182 DA P OP1 doub N N 183 DA P OP2 sing N N 184 DA P "O5'" sing N N 185 DA OP2 HOP2 sing N N 186 DA "O5'" "C5'" sing N N 187 DA "C5'" "C4'" sing N N 188 DA "C5'" "H5'" sing N N 189 DA "C5'" "H5''" sing N N 190 DA "C4'" "O4'" sing N N 191 DA "C4'" "C3'" sing N N 192 DA "C4'" "H4'" sing N N 193 DA "O4'" "C1'" sing N N 194 DA "C3'" "O3'" sing N N 195 DA "C3'" "C2'" sing N N 196 DA "C3'" "H3'" sing N N 197 DA "O3'" "HO3'" sing N N 198 DA "C2'" "C1'" sing N N 199 DA "C2'" "H2'" sing N N 200 DA "C2'" "H2''" sing N N 201 DA "C1'" N9 sing N N 202 DA "C1'" "H1'" sing N N 203 DA N9 C8 sing Y N 204 DA N9 C4 sing Y N 205 DA C8 N7 doub Y N 206 DA C8 H8 sing N N 207 DA N7 C5 sing Y N 208 DA C5 C6 sing Y N 209 DA C5 C4 doub Y N 210 DA C6 N6 sing N N 211 DA C6 N1 doub Y N 212 DA N6 H61 sing N N 213 DA N6 H62 sing N N 214 DA N1 C2 sing Y N 215 DA C2 N3 doub Y N 216 DA C2 H2 sing N N 217 DA N3 C4 sing Y N 218 DC OP3 P sing N N 219 DC OP3 HOP3 sing N N 220 DC P OP1 doub N N 221 DC P OP2 sing N N 222 DC P "O5'" sing N N 223 DC OP2 HOP2 sing N N 224 DC "O5'" "C5'" sing N N 225 DC "C5'" "C4'" sing N N 226 DC "C5'" "H5'" sing N N 227 DC "C5'" "H5''" sing N N 228 DC "C4'" "O4'" sing N N 229 DC "C4'" "C3'" sing N N 230 DC "C4'" "H4'" sing N N 231 DC "O4'" "C1'" sing N N 232 DC "C3'" "O3'" sing N N 233 DC "C3'" "C2'" sing N N 234 DC "C3'" "H3'" sing N N 235 DC "O3'" "HO3'" sing N N 236 DC "C2'" "C1'" sing N N 237 DC "C2'" "H2'" sing N N 238 DC "C2'" "H2''" sing N N 239 DC "C1'" N1 sing N N 240 DC "C1'" "H1'" sing N N 241 DC N1 C2 sing N N 242 DC N1 C6 sing N N 243 DC C2 O2 doub N N 244 DC C2 N3 sing N N 245 DC N3 C4 doub N N 246 DC C4 N4 sing N N 247 DC C4 C5 sing N N 248 DC N4 H41 sing N N 249 DC N4 H42 sing N N 250 DC C5 C6 doub N N 251 DC C5 H5 sing N N 252 DC C6 H6 sing N N 253 DG OP3 P sing N N 254 DG OP3 HOP3 sing N N 255 DG P OP1 doub N N 256 DG P OP2 sing N N 257 DG P "O5'" sing N N 258 DG OP2 HOP2 sing N N 259 DG "O5'" "C5'" sing N N 260 DG "C5'" "C4'" sing N N 261 DG "C5'" "H5'" sing N N 262 DG "C5'" "H5''" sing N N 263 DG "C4'" "O4'" sing N N 264 DG "C4'" "C3'" sing N N 265 DG "C4'" "H4'" sing N N 266 DG "O4'" "C1'" sing N N 267 DG "C3'" "O3'" sing N N 268 DG "C3'" "C2'" sing N N 269 DG "C3'" "H3'" sing N N 270 DG "O3'" "HO3'" sing N N 271 DG "C2'" "C1'" sing N N 272 DG "C2'" "H2'" sing N N 273 DG "C2'" "H2''" sing N N 274 DG "C1'" N9 sing N N 275 DG "C1'" "H1'" sing N N 276 DG N9 C8 sing Y N 277 DG N9 C4 sing Y N 278 DG C8 N7 doub Y N 279 DG C8 H8 sing N N 280 DG N7 C5 sing Y N 281 DG C5 C6 sing N N 282 DG C5 C4 doub Y N 283 DG C6 O6 doub N N 284 DG C6 N1 sing N N 285 DG N1 C2 sing N N 286 DG N1 H1 sing N N 287 DG C2 N2 sing N N 288 DG C2 N3 doub N N 289 DG N2 H21 sing N N 290 DG N2 H22 sing N N 291 DG N3 C4 sing N N 292 DT OP3 P sing N N 293 DT OP3 HOP3 sing N N 294 DT P OP1 doub N N 295 DT P OP2 sing N N 296 DT P "O5'" sing N N 297 DT OP2 HOP2 sing N N 298 DT "O5'" "C5'" sing N N 299 DT "C5'" "C4'" sing N N 300 DT "C5'" "H5'" sing N N 301 DT "C5'" "H5''" sing N N 302 DT "C4'" "O4'" sing N N 303 DT "C4'" "C3'" sing N N 304 DT "C4'" "H4'" sing N N 305 DT "O4'" "C1'" sing N N 306 DT "C3'" "O3'" sing N N 307 DT "C3'" "C2'" sing N N 308 DT "C3'" "H3'" sing N N 309 DT "O3'" "HO3'" sing N N 310 DT "C2'" "C1'" sing N N 311 DT "C2'" "H2'" sing N N 312 DT "C2'" "H2''" sing N N 313 DT "C1'" N1 sing N N 314 DT "C1'" "H1'" sing N N 315 DT N1 C2 sing N N 316 DT N1 C6 sing N N 317 DT C2 O2 doub N N 318 DT C2 N3 sing N N 319 DT N3 C4 sing N N 320 DT N3 H3 sing N N 321 DT C4 O4 doub N N 322 DT C4 C5 sing N N 323 DT C5 C7 sing N N 324 DT C5 C6 doub N N 325 DT C7 H71 sing N N 326 DT C7 H72 sing N N 327 DT C7 H73 sing N N 328 DT C6 H6 sing N N 329 GLN N CA sing N N 330 GLN N H sing N N 331 GLN N H2 sing N N 332 GLN CA C sing N N 333 GLN CA CB sing N N 334 GLN CA HA sing N N 335 GLN C O doub N N 336 GLN C OXT sing N N 337 GLN CB CG sing N N 338 GLN CB HB2 sing N N 339 GLN CB HB3 sing N N 340 GLN CG CD sing N N 341 GLN CG HG2 sing N N 342 GLN CG HG3 sing N N 343 GLN CD OE1 doub N N 344 GLN CD NE2 sing N N 345 GLN NE2 HE21 sing N N 346 GLN NE2 HE22 sing N N 347 GLN OXT HXT sing N N 348 GLU N CA sing N N 349 GLU N H sing N N 350 GLU N H2 sing N N 351 GLU CA C sing N N 352 GLU CA CB sing N N 353 GLU CA HA sing N N 354 GLU C O doub N N 355 GLU C OXT sing N N 356 GLU CB CG sing N N 357 GLU CB HB2 sing N N 358 GLU CB HB3 sing N N 359 GLU CG CD sing N N 360 GLU CG HG2 sing N N 361 GLU CG HG3 sing N N 362 GLU CD OE1 doub N N 363 GLU CD OE2 sing N N 364 GLU OE2 HE2 sing N N 365 GLU OXT HXT sing N N 366 GLY N CA sing N N 367 GLY N H sing N N 368 GLY N H2 sing N N 369 GLY CA C sing N N 370 GLY CA HA2 sing N N 371 GLY CA HA3 sing N N 372 GLY C O doub N N 373 GLY C OXT sing N N 374 GLY OXT HXT sing N N 375 GOL C1 O1 sing N N 376 GOL C1 C2 sing N N 377 GOL C1 H11 sing N N 378 GOL C1 H12 sing N N 379 GOL O1 HO1 sing N N 380 GOL C2 O2 sing N N 381 GOL C2 C3 sing N N 382 GOL C2 H2 sing N N 383 GOL O2 HO2 sing N N 384 GOL C3 O3 sing N N 385 GOL C3 H31 sing N N 386 GOL C3 H32 sing N N 387 GOL O3 HO3 sing N N 388 HIS N CA sing N N 389 HIS N H sing N N 390 HIS N H2 sing N N 391 HIS CA C sing N N 392 HIS CA CB sing N N 393 HIS CA HA sing N N 394 HIS C O doub N N 395 HIS C OXT sing N N 396 HIS CB CG sing N N 397 HIS CB HB2 sing N N 398 HIS CB HB3 sing N N 399 HIS CG ND1 sing Y N 400 HIS CG CD2 doub Y N 401 HIS ND1 CE1 doub Y N 402 HIS ND1 HD1 sing N N 403 HIS CD2 NE2 sing Y N 404 HIS CD2 HD2 sing N N 405 HIS CE1 NE2 sing Y N 406 HIS CE1 HE1 sing N N 407 HIS NE2 HE2 sing N N 408 HIS OXT HXT sing N N 409 HOH O H1 sing N N 410 HOH O H2 sing N N 411 ILE N CA sing N N 412 ILE N H sing N N 413 ILE N H2 sing N N 414 ILE CA C sing N N 415 ILE CA CB sing N N 416 ILE CA HA sing N N 417 ILE C O doub N N 418 ILE C OXT sing N N 419 ILE CB CG1 sing N N 420 ILE CB CG2 sing N N 421 ILE CB HB sing N N 422 ILE CG1 CD1 sing N N 423 ILE CG1 HG12 sing N N 424 ILE CG1 HG13 sing N N 425 ILE CG2 HG21 sing N N 426 ILE CG2 HG22 sing N N 427 ILE CG2 HG23 sing N N 428 ILE CD1 HD11 sing N N 429 ILE CD1 HD12 sing N N 430 ILE CD1 HD13 sing N N 431 ILE OXT HXT sing N N 432 LEU N CA sing N N 433 LEU N H sing N N 434 LEU N H2 sing N N 435 LEU CA C sing N N 436 LEU CA CB sing N N 437 LEU CA HA sing N N 438 LEU C O doub N N 439 LEU C OXT sing N N 440 LEU CB CG sing N N 441 LEU CB HB2 sing N N 442 LEU CB HB3 sing N N 443 LEU CG CD1 sing N N 444 LEU CG CD2 sing N N 445 LEU CG HG sing N N 446 LEU CD1 HD11 sing N N 447 LEU CD1 HD12 sing N N 448 LEU CD1 HD13 sing N N 449 LEU CD2 HD21 sing N N 450 LEU CD2 HD22 sing N N 451 LEU CD2 HD23 sing N N 452 LEU OXT HXT sing N N 453 LYS N CA sing N N 454 LYS N H sing N N 455 LYS N H2 sing N N 456 LYS CA C sing N N 457 LYS CA CB sing N N 458 LYS CA HA sing N N 459 LYS C O doub N N 460 LYS C OXT sing N N 461 LYS CB CG sing N N 462 LYS CB HB2 sing N N 463 LYS CB HB3 sing N N 464 LYS CG CD sing N N 465 LYS CG HG2 sing N N 466 LYS CG HG3 sing N N 467 LYS CD CE sing N N 468 LYS CD HD2 sing N N 469 LYS CD HD3 sing N N 470 LYS CE NZ sing N N 471 LYS CE HE2 sing N N 472 LYS CE HE3 sing N N 473 LYS NZ HZ1 sing N N 474 LYS NZ HZ2 sing N N 475 LYS NZ HZ3 sing N N 476 LYS OXT HXT sing N N 477 MET N CA sing N N 478 MET N H sing N N 479 MET N H2 sing N N 480 MET CA C sing N N 481 MET CA CB sing N N 482 MET CA HA sing N N 483 MET C O doub N N 484 MET C OXT sing N N 485 MET CB CG sing N N 486 MET CB HB2 sing N N 487 MET CB HB3 sing N N 488 MET CG SD sing N N 489 MET CG HG2 sing N N 490 MET CG HG3 sing N N 491 MET SD CE sing N N 492 MET CE HE1 sing N N 493 MET CE HE2 sing N N 494 MET CE HE3 sing N N 495 MET OXT HXT sing N N 496 PHE N CA sing N N 497 PHE N H sing N N 498 PHE N H2 sing N N 499 PHE CA C sing N N 500 PHE CA CB sing N N 501 PHE CA HA sing N N 502 PHE C O doub N N 503 PHE C OXT sing N N 504 PHE CB CG sing N N 505 PHE CB HB2 sing N N 506 PHE CB HB3 sing N N 507 PHE CG CD1 doub Y N 508 PHE CG CD2 sing Y N 509 PHE CD1 CE1 sing Y N 510 PHE CD1 HD1 sing N N 511 PHE CD2 CE2 doub Y N 512 PHE CD2 HD2 sing N N 513 PHE CE1 CZ doub Y N 514 PHE CE1 HE1 sing N N 515 PHE CE2 CZ sing Y N 516 PHE CE2 HE2 sing N N 517 PHE CZ HZ sing N N 518 PHE OXT HXT sing N N 519 PRO N CA sing N N 520 PRO N CD sing N N 521 PRO N H sing N N 522 PRO CA C sing N N 523 PRO CA CB sing N N 524 PRO CA HA sing N N 525 PRO C O doub N N 526 PRO C OXT sing N N 527 PRO CB CG sing N N 528 PRO CB HB2 sing N N 529 PRO CB HB3 sing N N 530 PRO CG CD sing N N 531 PRO CG HG2 sing N N 532 PRO CG HG3 sing N N 533 PRO CD HD2 sing N N 534 PRO CD HD3 sing N N 535 PRO OXT HXT sing N N 536 SER N CA sing N N 537 SER N H sing N N 538 SER N H2 sing N N 539 SER CA C sing N N 540 SER CA CB sing N N 541 SER CA HA sing N N 542 SER C O doub N N 543 SER C OXT sing N N 544 SER CB OG sing N N 545 SER CB HB2 sing N N 546 SER CB HB3 sing N N 547 SER OG HG sing N N 548 SER OXT HXT sing N N 549 THR N CA sing N N 550 THR N H sing N N 551 THR N H2 sing N N 552 THR CA C sing N N 553 THR CA CB sing N N 554 THR CA HA sing N N 555 THR C O doub N N 556 THR C OXT sing N N 557 THR CB OG1 sing N N 558 THR CB CG2 sing N N 559 THR CB HB sing N N 560 THR OG1 HG1 sing N N 561 THR CG2 HG21 sing N N 562 THR CG2 HG22 sing N N 563 THR CG2 HG23 sing N N 564 THR OXT HXT sing N N 565 TRP N CA sing N N 566 TRP N H sing N N 567 TRP N H2 sing N N 568 TRP CA C sing N N 569 TRP CA CB sing N N 570 TRP CA HA sing N N 571 TRP C O doub N N 572 TRP C OXT sing N N 573 TRP CB CG sing N N 574 TRP CB HB2 sing N N 575 TRP CB HB3 sing N N 576 TRP CG CD1 doub Y N 577 TRP CG CD2 sing Y N 578 TRP CD1 NE1 sing Y N 579 TRP CD1 HD1 sing N N 580 TRP CD2 CE2 doub Y N 581 TRP CD2 CE3 sing Y N 582 TRP NE1 CE2 sing Y N 583 TRP NE1 HE1 sing N N 584 TRP CE2 CZ2 sing Y N 585 TRP CE3 CZ3 doub Y N 586 TRP CE3 HE3 sing N N 587 TRP CZ2 CH2 doub Y N 588 TRP CZ2 HZ2 sing N N 589 TRP CZ3 CH2 sing Y N 590 TRP CZ3 HZ3 sing N N 591 TRP CH2 HH2 sing N N 592 TRP OXT HXT sing N N 593 TYR N CA sing N N 594 TYR N H sing N N 595 TYR N H2 sing N N 596 TYR CA C sing N N 597 TYR CA CB sing N N 598 TYR CA HA sing N N 599 TYR C O doub N N 600 TYR C OXT sing N N 601 TYR CB CG sing N N 602 TYR CB HB2 sing N N 603 TYR CB HB3 sing N N 604 TYR CG CD1 doub Y N 605 TYR CG CD2 sing Y N 606 TYR CD1 CE1 sing Y N 607 TYR CD1 HD1 sing N N 608 TYR CD2 CE2 doub Y N 609 TYR CD2 HD2 sing N N 610 TYR CE1 CZ doub Y N 611 TYR CE1 HE1 sing N N 612 TYR CE2 CZ sing Y N 613 TYR CE2 HE2 sing N N 614 TYR CZ OH sing N N 615 TYR OH HH sing N N 616 TYR OXT HXT sing N N 617 VAL N CA sing N N 618 VAL N H sing N N 619 VAL N H2 sing N N 620 VAL CA C sing N N 621 VAL CA CB sing N N 622 VAL CA HA sing N N 623 VAL C O doub N N 624 VAL C OXT sing N N 625 VAL CB CG1 sing N N 626 VAL CB CG2 sing N N 627 VAL CB HB sing N N 628 VAL CG1 HG11 sing N N 629 VAL CG1 HG12 sing N N 630 VAL CG1 HG13 sing N N 631 VAL CG2 HG21 sing N N 632 VAL CG2 HG22 sing N N 633 VAL CG2 HG23 sing N N 634 VAL OXT HXT sing N N 635 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4NIH 'double helix' 4NIH 'b-form double helix' 4NIH 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 2 1_555 C DT 13 1_555 0.010 -0.191 -0.197 -4.964 -6.693 0.985 1 B_DA2:DT13_C B 2 ? C 13 ? 20 1 1 B DG 3 1_555 C DC 12 1_555 -0.171 -0.135 0.412 7.234 -11.311 2.525 2 B_DG3:DC12_C B 3 ? C 12 ? 19 1 1 B DG 4 1_555 C DC 11 1_555 -0.266 -0.108 0.120 -0.201 -4.258 -0.550 3 B_DG4:DC11_C B 4 ? C 11 ? 19 1 1 B DT 5 1_555 C DA 10 1_555 -0.080 -0.131 0.061 9.420 -5.034 1.830 4 B_DT5:DA10_C B 5 ? C 10 ? 20 1 1 B DA 6 1_555 C DT 9 1_555 0.171 -0.045 0.329 20.001 -8.420 -3.995 5 B_DA6:DT9_C B 6 ? C 9 ? 20 1 1 B DA 9 1_555 C DT 6 1_555 0.060 -0.046 -0.215 -26.533 -4.912 2.639 6 B_DA9:DT6_C B 9 ? C 6 ? 20 1 1 B DC 11 1_555 C DG 4 1_555 0.153 -0.148 0.105 -5.529 -8.736 1.142 7 B_DC11:DG4_C B 11 ? C 4 ? 19 1 1 B DG 12 1_555 C DC 3 1_555 -0.238 -0.120 0.095 2.397 -4.222 -0.448 8 B_DG12:DC3_C B 12 ? C 3 ? 19 1 1 B DT 13 1_555 C DA 2 1_555 0.018 -0.122 -0.122 5.816 -8.110 4.088 9 B_DT13:DA2_C B 13 ? C 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 2 1_555 C DT 13 1_555 B DG 3 1_555 C DC 12 1_555 0.250 -0.320 3.003 -6.068 5.466 30.056 -1.541 -1.514 2.800 10.303 11.437 31.121 1 BB_DA2DG3:DC12DT13_CC B 2 ? C 13 ? B 3 ? C 12 ? 1 B DG 3 1_555 C DC 12 1_555 B DG 4 1_555 C DC 11 1_555 -0.695 -0.237 3.400 -0.473 4.281 36.703 -0.972 1.031 3.360 6.770 0.747 36.946 2 BB_DG3DG4:DC11DC12_CC B 3 ? C 12 ? B 4 ? C 11 ? 1 B DG 4 1_555 C DC 11 1_555 B DT 5 1_555 C DA 10 1_555 -0.290 -0.312 3.093 1.091 3.903 28.879 -1.418 0.799 3.012 7.778 -2.174 29.156 3 BB_DG4DT5:DA10DC11_CC B 4 ? C 11 ? B 5 ? C 10 ? 1 B DT 5 1_555 C DA 10 1_555 B DA 6 1_555 C DT 9 1_555 0.161 0.561 3.053 -0.437 0.799 35.282 0.815 -0.326 3.063 1.318 0.721 35.294 4 BB_DT5DA6:DT9DA10_CC B 5 ? C 10 ? B 6 ? C 9 ? 1 B DA 9 1_555 C DT 6 1_555 B DC 11 1_555 C DG 4 1_555 0.283 -0.313 6.135 5.973 6.709 61.839 -0.875 0.237 6.077 6.491 -5.780 62.424 5 BB_DA9DC11:DG4DT6_CC B 9 ? C 6 ? B 11 ? C 4 ? 1 B DC 11 1_555 C DG 4 1_555 B DG 12 1_555 C DC 3 1_555 -0.750 -0.065 3.118 -1.179 5.327 29.482 -1.177 1.218 3.086 10.355 2.293 29.972 6 BB_DC11DG12:DC3DG4_CC B 11 ? C 4 ? B 12 ? C 3 ? 1 B DG 12 1_555 C DC 3 1_555 B DT 13 1_555 C DA 2 1_555 0.176 -0.477 3.260 2.105 0.916 30.564 -1.083 0.080 3.249 1.735 -3.985 30.648 7 BB_DG12DT13:DA2DC3_CC B 12 ? C 3 ? B 13 ? C 2 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BIE _pdbx_initial_refinement_model.details 'PDB ENTRY 3BIE' # _atom_sites.entry_id 4NIH _atom_sites.fract_transf_matrix[1][1] 0.024347 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008374 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013094 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019886 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_