HEADER OXIDOREDUCTASE 06-NOV-13 4NIM TITLE CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE FROM BRUCELLA TITLE 2 MELITENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VERSICOLORIN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS; SOURCE 3 ORGANISM_TAXID: 546272; SOURCE 4 STRAIN: ATCC 23457; SOURCE 5 GENE: BMEA_A1386 KEYWDS REDUCTASE, SHORT CHAIN DEHYDROGENASES, OXIDOREDUCTASE, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR D.M.DRANOW,T.E.EDWARDS,D.LORIMER,SEATTLE STRUCTURAL GENOMICS CENTER AUTHOR 2 FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 20-SEP-23 4NIM 1 REMARK SEQADV REVDAT 4 22-NOV-17 4NIM 1 REMARK REVDAT 3 16-SEP-15 4NIM 1 AUTHOR REVDAT REMARK REVDAT 2 26-FEB-14 4NIM 1 AUTHOR REVDAT 1 20-NOV-13 4NIM 0 JRNL AUTH D.M.DRANOW,T.E.EDWARDS,D.LORIMER JRNL TITL CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE FROM JRNL TITL 2 BRUCELLA MELITENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 27974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1409 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1957 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.47000 REMARK 3 B22 (A**2) : -1.47000 REMARK 3 B33 (A**2) : 2.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.906 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1831 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1785 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2482 ; 1.509 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4063 ; 0.826 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 6.435 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;34.455 ;22.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 290 ;12.808 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.596 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2142 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 435 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 971 ; 0.965 ; 1.286 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 970 ; 0.965 ; 1.286 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1214 ; 1.552 ; 1.921 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): 74.1208 10.9927 -5.6642 REMARK 3 T TENSOR REMARK 3 T11: 0.2223 T22: 0.0755 REMARK 3 T33: 0.0246 T12: 0.0152 REMARK 3 T13: 0.0602 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 2.2872 L22: 2.7114 REMARK 3 L33: 2.9580 L12: 0.2837 REMARK 3 L13: -0.4605 L23: 0.6218 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: 0.1538 S13: -0.0884 REMARK 3 S21: -0.3100 S22: -0.0104 S23: -0.0984 REMARK 3 S31: 0.0985 S32: 0.2173 S33: 0.0437 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 71.1970 14.5469 9.0894 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.0674 REMARK 3 T33: 0.0576 T12: 0.0038 REMARK 3 T13: 0.0079 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.4253 L22: 0.8502 REMARK 3 L33: 0.8109 L12: -0.1534 REMARK 3 L13: 0.2593 L23: -0.2896 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.0486 S13: 0.0009 REMARK 3 S21: -0.1822 S22: -0.0118 S23: -0.0338 REMARK 3 S31: -0.0851 S32: 0.1466 S33: -0.0132 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 68.1588 2.1911 4.1070 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.0778 REMARK 3 T33: 0.1036 T12: -0.0193 REMARK 3 T13: 0.0221 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 3.1449 L22: 5.0356 REMARK 3 L33: 2.9419 L12: -2.3506 REMARK 3 L13: -0.6066 L23: -0.0949 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: 0.0638 S13: -0.1092 REMARK 3 S21: -0.2534 S22: 0.0084 S23: -0.1320 REMARK 3 S31: 0.1667 S32: 0.2448 S33: 0.0199 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 232 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 65.3043 -2.8739 12.2078 REMARK 3 T TENSOR REMARK 3 T11: 0.1139 T22: 0.0634 REMARK 3 T33: 0.0900 T12: 0.0176 REMARK 3 T13: 0.0097 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.2494 L22: 0.7706 REMARK 3 L33: 1.1064 L12: 0.0309 REMARK 3 L13: 0.0884 L23: -0.1686 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: 0.0269 S13: -0.0526 REMARK 3 S21: -0.1717 S22: 0.0168 S23: -0.0390 REMARK 3 S31: 0.0535 S32: 0.0585 S33: -0.0297 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27974 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: PDB ENTRY 1YBV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG+(D3): 50% PEG-200, 100MM SODIUM REMARK 280 PHOSPHATE DIBASIC/ POTASSIUM PHOSPHATE MONOBASIC, PH 6.2, 200MM REMARK 280 NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 59.10500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 59.10500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.59000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.29500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.10500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.88500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.10500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.88500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.10500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.29500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 59.10500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 59.10500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.59000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.10500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.10500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.59000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.10500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 63.88500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.10500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 21.29500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.10500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 21.29500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.10500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 63.88500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.10500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.10500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 42.59000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 59.10500 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -59.10500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.59000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 59.10500 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -59.10500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.59000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 118.21000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 59.10500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 59.10500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 42.59000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 444 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 452 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 193 REMARK 465 ASP A 194 REMARK 465 GLY A 195 REMARK 465 GLU A 196 REMARK 465 ASP A 197 REMARK 465 ARG A 198 REMARK 465 ILE A 199 REMARK 465 GLN A 200 REMARK 465 ARG A 201 REMARK 465 GLU A 202 REMARK 465 TYR A 203 REMARK 465 HIS A 204 REMARK 465 GLY A 205 REMARK 465 ALA A 206 REMARK 465 PRO A 207 REMARK 465 ALA A 208 REMARK 465 ASN A 209 REMARK 465 TRP A 210 REMARK 465 LEU A 211 REMARK 465 GLU A 212 REMARK 465 GLU A 213 REMARK 465 ALA A 214 REMARK 465 VAL A 215 REMARK 465 LYS A 216 REMARK 465 THR A 217 REMARK 465 GLN A 218 REMARK 465 PRO A 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 ARG A 46 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 LYS A 267 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 117 -53.91 -131.71 REMARK 500 SER A 144 -157.51 -108.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BRMEB.00143.C RELATED DB: TARGETTRACK DBREF 4NIM A 1 269 UNP C0RJU5 C0RJU5_BRUMB 1 269 SEQADV 4NIM MET A -7 UNP C0RJU5 EXPRESSION TAG SEQADV 4NIM ALA A -6 UNP C0RJU5 EXPRESSION TAG SEQADV 4NIM HIS A -5 UNP C0RJU5 EXPRESSION TAG SEQADV 4NIM HIS A -4 UNP C0RJU5 EXPRESSION TAG SEQADV 4NIM HIS A -3 UNP C0RJU5 EXPRESSION TAG SEQADV 4NIM HIS A -2 UNP C0RJU5 EXPRESSION TAG SEQADV 4NIM HIS A -1 UNP C0RJU5 EXPRESSION TAG SEQADV 4NIM HIS A 0 UNP C0RJU5 EXPRESSION TAG SEQRES 1 A 277 MET ALA HIS HIS HIS HIS HIS HIS MET GLY GLY GLN LEU SEQRES 2 A 277 LYS GLY LYS ILE ALA VAL ILE THR GLY SER THR GLN GLY SEQRES 3 A 277 LEU GLY ALA ALA THR ALA ARG LEU PHE ALA GLU ARG GLY SEQRES 4 A 277 ALA GLN GLY LEU VAL ILE CYS GLY ARG SER ALA GLU LYS SEQRES 5 A 277 GLY ARG ALA GLN ALA ALA GLY LEU GLU GLU LEU GLY ALA SEQRES 6 A 277 LYS ALA VAL PHE VAL GLN VAL ASP LEU GLU ASN VAL GLU SEQRES 7 A 277 ASP CYS ARG ARG ILE VAL ALA GLU ALA ASP ARG ALA PHE SEQRES 8 A 277 GLY ARG LEU ASP ILE LEU VAL ASN ALA ALA GLY LEU THR SEQRES 9 A 277 ASP ARG GLY THR ILE LEU ASP THR SER PRO GLU LEU PHE SEQRES 10 A 277 ASP ARG LEU PHE ALA VAL ASN THR ARG ALA PRO PHE PHE SEQRES 11 A 277 LEU ILE GLN GLU ALA ILE LYS LEU PHE ARG ARG ASP ARG SEQRES 12 A 277 VAL GLU GLY ALA ILE VAL ASN VAL SER SER MET SER SER SEQRES 13 A 277 MET GLY GLY GLN PRO PHE ILE ALA ALA TYR CYS ALA SER SEQRES 14 A 277 LYS GLY ALA LEU ASP THR LEU THR ARG ASN VAL ALA TYR SEQRES 15 A 277 SER VAL LEU ARG ASN ARG ILE ARG VAL ASN SER LEU ASN SEQRES 16 A 277 ILE GLY TRP MET ALA SER ASP GLY GLU ASP ARG ILE GLN SEQRES 17 A 277 ARG GLU TYR HIS GLY ALA PRO ALA ASN TRP LEU GLU GLU SEQRES 18 A 277 ALA VAL LYS THR GLN PRO PHE GLY ARG LEU LEU ASP PRO SEQRES 19 A 277 ALA LYS VAL ALA ARG ALA ILE ALA PHE LEU ALA SER GLU SEQRES 20 A 277 GLU SER GLY LEU MET THR GLY ALA ILE VAL ASN PHE ASP SEQRES 21 A 277 GLN SER VAL TRP GLY ALA TYR ASP GLY SER PRO HIS PRO SEQRES 22 A 277 GLU LYS PRO LEU HET EDO A 301 4 HET EDO A 302 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 HOH *167(H2 O) HELIX 1 1 GLN A 17 ARG A 30 1 14 HELIX 2 2 SER A 41 LEU A 55 1 15 HELIX 3 3 ASN A 68 GLY A 84 1 17 HELIX 4 4 SER A 105 THR A 117 1 13 HELIX 5 5 THR A 117 ARG A 135 1 19 HELIX 6 6 SER A 147 GLY A 150 5 4 HELIX 7 7 GLN A 152 PHE A 154 5 3 HELIX 8 8 ILE A 155 VAL A 176 1 22 HELIX 9 9 LEU A 177 ARG A 180 5 4 HELIX 10 10 ASP A 225 SER A 238 1 14 HELIX 11 11 GLU A 239 GLY A 242 5 4 SHEET 1 A 7 LYS A 58 GLN A 63 0 SHEET 2 A 7 GLY A 34 GLY A 39 1 N ILE A 37 O VAL A 60 SHEET 3 A 7 ILE A 9 ILE A 12 1 N ALA A 10 O VAL A 36 SHEET 4 A 7 ILE A 88 ASN A 91 1 O VAL A 90 N VAL A 11 SHEET 5 A 7 ALA A 139 SER A 145 1 O VAL A 141 N ASN A 91 SHEET 6 A 7 ARG A 182 ILE A 188 1 O ASN A 184 N ASN A 142 SHEET 7 A 7 ILE A 248 PHE A 251 1 O VAL A 249 N ASN A 187 CISPEP 1 PHE A 220 GLY A 221 0 18.98 SITE 1 AC1 3 SER A 148 ASP A 166 HOH A 487 SITE 1 AC2 4 ARG A 135 ASN A 179 ARG A 180 HOH A 549 CRYST1 118.210 118.210 85.180 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008460 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011740 0.00000