HEADER HYDROLASE, DNA BINDING PROTEIN 11-NOV-13 4NJY OBSLTE 29-APR-20 4NJY 6YPR TITLE HUMAN HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 2 (HHINT2) IN H32 TITLE 2 SPACE GROUP AT 1.32 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 2, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: HINT-2, HINT-3, HIT-17KDA, PKCI-1-RELATED HIT PROTEIN; COMPND 6 EC: 3.-.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HINT2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGAT2 KEYWDS HINT, HISTIDINE TRIAD, HIT, PHOSPHORAMIDASE, HYDROLASE, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.M.DOLOT,A.WLODARCZYK,G.D.BUJACZ,B.NAWROT REVDAT 3 29-APR-20 4NJY 1 OBSLTE REVDAT 2 07-MAR-18 4NJY 1 REMARK REVDAT 1 11-DEC-13 4NJY 0 JRNL AUTH R.M.DOLOT,A.WLODARCZYK,G.D.BUJACZ,B.NAWROT JRNL TITL HUMAN HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 2 (HHINT2) JRNL TITL 2 IN H32 SPACE GROUP AT 1.32 A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1231 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1673 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.046 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.816 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 975 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 953 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1346 ; 2.464 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2200 ; 0.969 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 131 ; 7.140 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;44.088 ;24.792 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 172 ;11.712 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;12.131 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 140 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1201 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 237 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 482 ; 2.124 ; 1.523 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 481 ; 2.123 ; 1.522 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 627 ; 2.723 ; 2.272 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 628 ; 2.721 ; 2.272 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 493 ; 3.196 ; 1.865 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 489 ; 3.113 ; 1.859 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 713 ; 4.925 ; 2.672 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1283 ; 8.489 ;16.644 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1138 ; 7.784 ;13.828 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9669 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.30 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 467633 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 53.131 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.50 REMARK 200 R MERGE FOR SHELL (I) : 0.94700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3TW2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 16.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 20000, 0.1M MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 35.86650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 20.70753 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 34.17567 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 35.86650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 20.70753 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 34.17567 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 35.86650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 20.70753 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 34.17567 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 35.86650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 20.70753 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.17567 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 35.86650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 20.70753 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 34.17567 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 35.86650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 20.70753 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.17567 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 41.41507 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 68.35133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 41.41507 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 68.35133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 41.41507 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 68.35133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 41.41507 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 68.35133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 41.41507 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 68.35133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 41.41507 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 68.35133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 35.86650 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 20.70753 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.17567 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 318 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 VAL A 5 REMARK 465 VAL A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 LEU A 11 REMARK 465 ARG A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 ARG A 15 REMARK 465 ARG A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 THR A 21 REMARK 465 GLY A 22 REMARK 465 VAL A 23 REMARK 465 ARG A 24 REMARK 465 GLY A 25 REMARK 465 GLY A 26 REMARK 465 GLN A 27 REMARK 465 VAL A 28 REMARK 465 ARG A 29 REMARK 465 GLY A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 GLY A 33 REMARK 465 VAL A 34 REMARK 465 THR A 35 REMARK 465 ASP A 36 REMARK 465 GLY A 37 REMARK 465 ASN A 38 REMARK 465 GLU A 39 REMARK 465 VAL A 40 REMARK 465 ALA A 41 REMARK 465 LYS A 42 REMARK 465 ALA A 43 REMARK 465 GLN A 44 REMARK 465 GLN A 45 REMARK 465 ALA A 46 REMARK 465 THR A 47 REMARK 465 PRO A 48 REMARK 465 GLY A 49 REMARK 465 GLY A 50 REMARK 465 ALA A 51 REMARK 465 ALA A 52 REMARK 465 PRO A 53 REMARK 465 THR A 54 REMARK 465 ILE A 55 REMARK 465 PHE A 56 REMARK 465 SER A 57 REMARK 465 ARG A 58 REMARK 465 ILE A 59 REMARK 465 LEU A 60 REMARK 465 ASP A 61 REMARK 465 LYS A 62 REMARK 465 SER A 63 REMARK 465 LEU A 64 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 65 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS A 149 O HOH A 301 1.71 REMARK 500 NE2 GLN A 102 O HOH A 401 1.83 REMARK 500 NE2 HIS A 149 O4 PO4 A 201 1.95 REMARK 500 O HOH A 313 O HOH A 472 2.02 REMARK 500 O HOH A 379 O HOH A 488 2.03 REMARK 500 O HOH A 313 O HOH A 467 2.05 REMARK 500 O HOH A 413 O HOH A 467 2.09 REMARK 500 O HOH A 464 O HOH A 467 2.09 REMARK 500 O HOH A 332 O HOH A 334 2.12 REMARK 500 NE2 GLN A 120 O HOH A 476 2.13 REMARK 500 O HOH A 337 O HOH A 472 2.14 REMARK 500 OE1 GLN A 102 O HOH A 442 2.19 REMARK 500 NE2 HIS A 149 P PO4 A 201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 65 N - CA - CB ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 80 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ILE A 92 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP A 107 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 129 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 66 -62.76 -137.94 REMARK 500 ASP A 67 1.22 -62.27 REMARK 500 LEU A 127 46.60 -92.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NJX RELATED DB: PDB REMARK 900 THE SAME PROTEIN CRYSTALLIZED IN P41212 SPACE GROUP REMARK 900 RELATED ID: 4NJZ RELATED DB: PDB REMARK 900 RELATED ID: 4NK0 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 UPON CRYSTALLIZATION AUTHORS OBSERVED A TRUNCATION OF PROTEIN CHAIN, REMARK 999 CONFIRMED BY MASS SPECTROSCOPY OF OBTAINED CRYSTALS. THE RESULT REMARK 999 SHOW FOUR MAJOR FRACTIONS WITH 102, 106, 118 AND 120 AA, BUT IN REMARK 999 SOLVED STRUCTURE WE OBSERVED CHAINS WITH LENGTH 110 AND 100 AA, REMARK 999 WHAT IS MORE OR LESS IN AGREEMENT WITH MS RESULTS DBREF 4NJY A 1 163 UNP Q9BX68 HINT2_HUMAN 1 163 SEQRES 1 A 163 MET ALA ALA ALA VAL VAL LEU ALA ALA GLY LEU ARG ALA SEQRES 2 A 163 ALA ARG ARG ALA VAL ALA ALA THR GLY VAL ARG GLY GLY SEQRES 3 A 163 GLN VAL ARG GLY ALA ALA GLY VAL THR ASP GLY ASN GLU SEQRES 4 A 163 VAL ALA LYS ALA GLN GLN ALA THR PRO GLY GLY ALA ALA SEQRES 5 A 163 PRO THR ILE PHE SER ARG ILE LEU ASP LYS SER LEU PRO SEQRES 6 A 163 ALA ASP ILE LEU TYR GLU ASP GLN GLN CYS LEU VAL PHE SEQRES 7 A 163 ARG ASP VAL ALA PRO GLN ALA PRO VAL HIS PHE LEU VAL SEQRES 8 A 163 ILE PRO LYS LYS PRO ILE PRO ARG ILE SER GLN ALA GLU SEQRES 9 A 163 GLU GLU ASP GLN GLN LEU LEU GLY HIS LEU LEU LEU VAL SEQRES 10 A 163 ALA LYS GLN THR ALA LYS ALA GLU GLY LEU GLY ASP GLY SEQRES 11 A 163 TYR ARG LEU VAL ILE ASN ASP GLY LYS LEU GLY ALA GLN SEQRES 12 A 163 SER VAL TYR HIS LEU HIS ILE HIS VAL LEU GLY GLY ARG SEQRES 13 A 163 GLN LEU GLN TRP PRO PRO GLY HET PO4 A 201 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *192(H2 O) HELIX 1 1 ARG A 99 ALA A 103 5 5 HELIX 2 2 GLU A 104 GLU A 106 5 3 HELIX 3 3 ASP A 107 GLU A 125 1 19 SHEET 1 A 5 ILE A 68 GLU A 71 0 SHEET 2 A 5 CYS A 75 ARG A 79 -1 O VAL A 77 N TYR A 70 SHEET 3 A 5 VAL A 87 PRO A 93 -1 O LEU A 90 N PHE A 78 SHEET 4 A 5 ILE A 150 GLY A 154 -1 O VAL A 152 N PHE A 89 SHEET 5 A 5 TYR A 131 VAL A 134 -1 N VAL A 134 O HIS A 151 CISPEP 1 TRP A 160 PRO A 161 0 17.11 SITE 1 AC1 10 ASN A 136 ALA A 142 GLN A 143 SER A 144 SITE 2 AC1 10 VAL A 145 HIS A 149 HIS A 151 HOH A 301 SITE 3 AC1 10 HOH A 302 HOH A 419 CRYST1 71.733 71.733 102.527 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013941 0.008049 0.000000 0.00000 SCALE2 0.000000 0.016097 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009754 0.00000