HEADER ISOMERASE 12-NOV-13 4NK6 TITLE CRYSTAL STRUCTURE OF THE PERIPLASMIC ALGINATE EPIMERASE ALGG COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(BETA-D-MANNURONATE) C5 EPIMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.1.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. TOMATO; SOURCE 3 ORGANISM_TAXID: 223283; SOURCE 4 STRAIN: DC3000; SOURCE 5 GENE: ALGG, PSPTO_1238; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALGG, PSEUDOMONAS, PARALLEL BETA-HELIX, ALGINATE, MANNURONATE, KEYWDS 2 POLYSACCHARIDE EPIMERASE, LYSINE METHYLATION, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.L.HOWELL,F.WOLFRAM,H.ROBINSON REVDAT 3 19-MAR-14 4NK6 1 JRNL REVDAT 2 05-FEB-14 4NK6 1 JRNL REVDAT 1 15-JAN-14 4NK6 0 JRNL AUTH F.WOLFRAM,E.N.KITOVA,H.ROBINSON,M.T.WALVOORT,J.D.CODEE, JRNL AUTH 2 J.S.KLASSEN,P.L.HOWELL JRNL TITL CATALYTIC MECHANISM AND MODE OF ACTION OF THE PERIPLASMIC JRNL TITL 2 ALGINATE EPIMERASE ALGG. JRNL REF J.BIOL.CHEM. V. 289 6006 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24398681 JRNL DOI 10.1074/JBC.M113.533158 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 52894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.790 REMARK 3 FREE R VALUE TEST SET COUNT : 2003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8258 - 5.0533 1.00 3828 155 0.1955 0.2072 REMARK 3 2 5.0533 - 4.0116 0.99 3698 139 0.1465 0.1615 REMARK 3 3 4.0116 - 3.5047 1.00 3671 144 0.1697 0.2051 REMARK 3 4 3.5047 - 3.1843 1.00 3659 145 0.1997 0.2234 REMARK 3 5 3.1843 - 2.9561 1.00 3651 142 0.2011 0.1961 REMARK 3 6 2.9561 - 2.7818 1.00 3671 144 0.2033 0.2273 REMARK 3 7 2.7818 - 2.6425 1.00 3611 140 0.1924 0.2475 REMARK 3 8 2.6425 - 2.5275 1.00 3644 144 0.1963 0.2642 REMARK 3 9 2.5275 - 2.4302 1.00 3622 143 0.1921 0.2531 REMARK 3 10 2.4302 - 2.3463 1.00 3615 142 0.1853 0.2148 REMARK 3 11 2.3463 - 2.2730 1.00 3651 142 0.2051 0.2359 REMARK 3 12 2.2730 - 2.2080 0.96 3450 140 0.3010 0.3331 REMARK 3 13 2.2080 - 2.1499 1.00 3613 143 0.2210 0.2541 REMARK 3 14 2.1499 - 2.0974 0.97 3507 140 0.2249 0.2756 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3420 REMARK 3 ANGLE : 1.138 4632 REMARK 3 CHIRALITY : 0.079 507 REMARK 3 PLANARITY : 0.004 589 REMARK 3 DIHEDRAL : 13.019 1272 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resid 69 through 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3713 47.1679 -14.0100 REMARK 3 T TENSOR REMARK 3 T11: 0.5171 T22: 0.5447 REMARK 3 T33: 0.5705 T12: 0.1150 REMARK 3 T13: -0.2481 T23: -0.2218 REMARK 3 L TENSOR REMARK 3 L11: 1.9359 L22: 0.7023 REMARK 3 L33: 0.7080 L12: -0.1209 REMARK 3 L13: -0.1554 L23: 0.3241 REMARK 3 S TENSOR REMARK 3 S11: 0.4006 S12: 0.6276 S13: -0.6464 REMARK 3 S21: -0.6354 S22: -0.4308 S23: 0.6149 REMARK 3 S31: -0.0420 S32: -0.2742 S33: 0.0663 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resid 97 through 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3695 63.2438 12.8695 REMARK 3 T TENSOR REMARK 3 T11: 0.2620 T22: 0.5889 REMARK 3 T33: 0.5491 T12: 0.0632 REMARK 3 T13: -0.0414 T23: -0.1486 REMARK 3 L TENSOR REMARK 3 L11: 2.2186 L22: 3.6271 REMARK 3 L33: 0.7557 L12: 0.8777 REMARK 3 L13: 1.1943 L23: 1.0853 REMARK 3 S TENSOR REMARK 3 S11: -0.1333 S12: -0.2592 S13: -0.4305 REMARK 3 S21: 0.5717 S22: -0.4085 S23: 1.0338 REMARK 3 S31: -0.0269 S32: -0.6335 S33: -0.0740 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resid 120 through 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8951 69.8014 -1.2116 REMARK 3 T TENSOR REMARK 3 T11: 0.3407 T22: 0.4995 REMARK 3 T33: 0.4918 T12: 0.1486 REMARK 3 T13: -0.1606 T23: -0.1287 REMARK 3 L TENSOR REMARK 3 L11: 2.1831 L22: 1.2464 REMARK 3 L33: 1.6462 L12: 0.1462 REMARK 3 L13: -0.0850 L23: 0.3072 REMARK 3 S TENSOR REMARK 3 S11: 0.0923 S12: 0.0844 S13: 0.0653 REMARK 3 S21: -0.3704 S22: -0.2178 S23: 0.4281 REMARK 3 S31: -0.1889 S32: -0.4983 S33: 0.1113 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resid 189 through 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6904 65.3675 1.2085 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.3887 REMARK 3 T33: 0.3043 T12: 0.0746 REMARK 3 T13: -0.0910 T23: -0.0782 REMARK 3 L TENSOR REMARK 3 L11: 2.0005 L22: 2.1656 REMARK 3 L33: 1.3120 L12: -0.5082 REMARK 3 L13: -0.3060 L23: 0.2269 REMARK 3 S TENSOR REMARK 3 S11: 0.1022 S12: -0.0437 S13: 0.0443 REMARK 3 S21: -0.2602 S22: -0.1459 S23: 0.2464 REMARK 3 S31: -0.1007 S32: -0.3405 S33: 0.0730 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resid 259 through 315 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6276 53.6468 0.8933 REMARK 3 T TENSOR REMARK 3 T11: 0.2485 T22: 0.3534 REMARK 3 T33: 0.3135 T12: 0.0016 REMARK 3 T13: -0.0864 T23: -0.0883 REMARK 3 L TENSOR REMARK 3 L11: 2.4798 L22: 2.4194 REMARK 3 L33: 1.3777 L12: -1.2828 REMARK 3 L13: -0.2544 L23: 0.5477 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: 0.0646 S13: -0.3571 REMARK 3 S21: -0.3011 S22: -0.2152 S23: 0.3545 REMARK 3 S31: 0.1529 S32: -0.2826 S33: 0.1016 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resid 316 through 388 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7080 49.7841 -1.3458 REMARK 3 T TENSOR REMARK 3 T11: 0.2423 T22: 0.2540 REMARK 3 T33: 0.2700 T12: 0.0134 REMARK 3 T13: -0.0370 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 2.6255 L22: 2.2095 REMARK 3 L33: 1.5062 L12: -0.6491 REMARK 3 L13: -0.2308 L23: -0.1271 REMARK 3 S TENSOR REMARK 3 S11: 0.1094 S12: 0.0159 S13: -0.0895 REMARK 3 S21: -0.2489 S22: -0.1616 S23: 0.0817 REMARK 3 S31: 0.0778 S32: -0.1268 S33: 0.0666 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resid 389 through 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2066 42.3515 -1.1665 REMARK 3 T TENSOR REMARK 3 T11: 0.2199 T22: 0.2169 REMARK 3 T33: 0.3165 T12: 0.0322 REMARK 3 T13: -0.0198 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 4.6227 L22: 1.4355 REMARK 3 L33: 4.8054 L12: -0.5644 REMARK 3 L13: -1.1567 L23: -0.9270 REMARK 3 S TENSOR REMARK 3 S11: 0.0955 S12: 0.0460 S13: -0.1592 REMARK 3 S21: -0.1765 S22: -0.1092 S23: 0.0578 REMARK 3 S31: 0.1831 S32: 0.0013 S33: 0.0380 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'A' and (resid 429 through 463 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1125 41.2191 10.6343 REMARK 3 T TENSOR REMARK 3 T11: 0.2666 T22: 0.4739 REMARK 3 T33: 0.4003 T12: 0.0188 REMARK 3 T13: -0.0540 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 4.4205 L22: 2.6400 REMARK 3 L33: 4.4252 L12: -0.3086 REMARK 3 L13: -1.0755 L23: -0.7089 REMARK 3 S TENSOR REMARK 3 S11: -0.0532 S12: -0.8641 S13: -0.1258 REMARK 3 S21: 0.3823 S22: -0.0015 S23: 0.2882 REMARK 3 S31: -0.0635 S32: -0.2658 S33: -0.0119 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'A' and (resid 464 through 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1578 37.2794 -2.7242 REMARK 3 T TENSOR REMARK 3 T11: 0.2682 T22: 0.3458 REMARK 3 T33: 0.4440 T12: 0.0436 REMARK 3 T13: 0.0031 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.5403 L22: 6.0536 REMARK 3 L33: 2.5567 L12: -1.6086 REMARK 3 L13: 2.1088 L23: 0.0891 REMARK 3 S TENSOR REMARK 3 S11: 0.1676 S12: -0.0211 S13: -0.2693 REMARK 3 S21: 0.0269 S22: 0.0377 S23: 0.0444 REMARK 3 S31: 0.1091 S32: 0.0255 S33: -0.2008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-13. REMARK 100 THE RCSB ID CODE IS RCSB083305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53161 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.097 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 21.50 REMARK 200 R MERGE FOR SHELL (I) : 0.58700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26 M (NH4)2SO4, 0.1 M HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.13867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.56933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.56933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.13867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 605 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 46 REMARK 465 ALA A 47 REMARK 465 LEU A 48 REMARK 465 VAL A 49 REMARK 465 LYS A 50 REMARK 465 GLU A 51 REMARK 465 LEU A 52 REMARK 465 HIS A 53 REMARK 465 GLN A 54 REMARK 465 ALA A 55 REMARK 465 LYS A 56 REMARK 465 THR A 57 REMARK 465 TYR A 58 REMARK 465 THR A 59 REMARK 465 ILE A 60 REMARK 465 THR A 61 REMARK 465 SER A 62 REMARK 465 PRO A 63 REMARK 465 PRO A 64 REMARK 465 THR A 65 REMARK 465 GLY A 66 REMARK 465 PRO A 67 REMARK 465 LEU A 68 REMARK 465 PRO A 493 REMARK 465 THR A 494 REMARK 465 LYS A 495 REMARK 465 GLU A 496 REMARK 465 VAL A 497 REMARK 465 GLY A 498 REMARK 465 ILE A 499 REMARK 465 SER A 500 REMARK 465 LEU A 501 REMARK 465 ASN A 502 REMARK 465 GLY A 503 REMARK 465 ILE A 504 REMARK 465 LEU A 505 REMARK 465 GLY A 506 REMARK 465 GLU A 507 REMARK 465 ARG A 508 REMARK 465 GLN A 509 REMARK 465 ASP A 510 REMARK 465 GLU A 511 REMARK 465 ILE A 512 REMARK 465 LEU A 513 REMARK 465 ASP A 514 REMARK 465 LEU A 515 REMARK 465 LEU A 516 REMARK 465 VAL A 517 REMARK 465 ARG A 518 REMARK 465 GLN A 519 REMARK 465 LYS A 520 REMARK 465 LYS A 521 REMARK 465 ALA A 522 REMARK 465 VAL A 523 REMARK 465 LEU A 524 REMARK 465 ILE A 525 REMARK 465 ASP A 526 REMARK 465 PRO A 527 REMARK 465 VAL A 528 REMARK 465 GLU A 529 REMARK 465 SER A 530 REMARK 465 GLN A 531 REMARK 465 THR A 532 REMARK 465 GLU A 533 REMARK 465 LEU A 534 REMARK 465 ARG A 535 REMARK 465 GLU A 536 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 97 CD CE NZ REMARK 470 LYS A 148 CE NZ REMARK 470 ASP A 446 CG OD1 OD2 REMARK 470 GLU A 450 CG CD OE1 OE2 REMARK 470 ARG A 487 CG CD NE CZ NH1 NH2 REMARK 470 MET A 492 SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 179 -164.11 -128.75 REMARK 500 ARG A 222 -45.43 -131.69 REMARK 500 PRO A 229 157.07 -48.20 REMARK 500 LYS A 273 61.72 39.04 REMARK 500 ASP A 320 73.45 53.10 REMARK 500 MLY A 338 -130.76 -127.84 REMARK 500 ARG A 345 79.60 75.22 REMARK 500 LEU A 362 -119.45 -113.15 REMARK 500 THR A 386 -115.39 -116.62 REMARK 500 ARG A 409 -122.71 -107.39 REMARK 500 GLU A 424 18.83 58.86 REMARK 500 LEU A 432 -116.25 -114.21 REMARK 500 THR A 445 -168.23 -108.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NK8 RELATED DB: PDB DBREF 4NK6 A 46 536 UNP Q887Q3 ALGG_PSESM 46 536 SEQRES 1 A 491 LYS ALA LEU VAL LYS GLU LEU HIS GLN ALA LYS THR TYR SEQRES 2 A 491 THR ILE THR SER PRO PRO THR GLY PRO LEU GLU MET ALA SEQRES 3 A 491 LYS PRO VAL LEU PRO ASP LEU SER GLY TYR THR THR GLU SEQRES 4 A 491 ALA ALA LEU MLY MLY ILE ALA ARG ASN LYS PRO GLY LYS SEQRES 5 A 491 ILE THR VAL ALA ARG MET MET GLU GLU THR GLY LEU MLY SEQRES 6 A 491 GLU PHE ILE GLY GLY ASP ASN MLY MET ALA GLU TRP VAL SEQRES 7 A 491 VAL ARG GLN LYS GLY ILE PRO GLN ALA ILE MET ILE SER SEQRES 8 A 491 ASP GLY TYR VAL ASN LEU GLN ASP LEU VAL LYS LYS VAL SEQRES 9 A 491 PRO LYS GLN PHE LEU SER GLU VAL SER PRO GLY VAL TYR SEQRES 10 A 491 VAL ALA ARG LEU PRO ILE LEU VAL MLY GLU THR GLY ILE SEQRES 11 A 491 PHE GLU ILE ASP SER MLY THR LYS GLU LEU ARG LEU SER SEQRES 12 A 491 GLN GLU MLY GLY SER PHE ILE VAL SER GLU GLY MLY MET SEQRES 13 A 491 LEU ILE THR ASN THR SER VAL ASN ALA TRP SER GLU THR SEQRES 14 A 491 ARG ASN GLY LEU ALA ALA TYR ARG THR PRO ASP GLU PHE SEQRES 15 A 491 ARG PRO PHE VAL LEU THR TRP GLY GLY SER GLN THR TRP SEQRES 16 A 491 ILE ALA MLY THR LYS MET ALA SER MET GLY TYR ASN GLN SEQRES 17 A 491 SER MLY SER TYR GLY VAL SER ILE SER GLN TYR THR PRO SEQRES 18 A 491 ASN THR ALA LYS VAL LEU LYS ARG GLY GLU PRO THR GLY SEQRES 19 A 491 TRP ILE ILE ASP SER GLU PHE ALA ASP MET TRP TYR GLY SEQRES 20 A 491 PHE TYR CYS TYR GLU THR ARG ASP PHE VAL VAL MLY GLY SEQRES 21 A 491 ASN THR TYR ARG ASP ASN ILE VAL TYR GLY ILE ASP PRO SEQRES 22 A 491 HIS ASP ARG SER HIS GLY LEU ILE ILE ALA GLU ASN ASP SEQRES 23 A 491 VAL TYR GLY THR MLY MLY MLY HIS GLY ILE ILE ILE SER SEQRES 24 A 491 ARG GLU VAL ASP ASN SER PHE ILE PHE ARG ASN MLY SER SEQRES 25 A 491 HIS ASN ASN MLY LEU SER GLY VAL VAL LEU ASP ARG ASN SEQRES 26 A 491 SER VAL GLY ASN ILE VAL ALA TYR ASN GLU ILE TYR GLN SEQRES 27 A 491 ASN HIS THR ASP GLY ILE THR LEU TYR GLU SER GLY ASN SEQRES 28 A 491 ASN LEU LEU TRP GLY ASN ARG VAL ILE ALA ASN ARG ARG SEQRES 29 A 491 HIS GLY ILE ARG VAL ARG ASN SER VAL ASN ILE LYS LEU SEQRES 30 A 491 TYR GLU ASN VAL ALA MET ALA ASN GLY LEU MET GLY VAL SEQRES 31 A 491 TYR GLY HIS ILE MLY ASP LEU ASN ASP THR ASP ARG ASP SEQRES 32 A 491 ILE GLU LEU ASP PRO PHE ASP ALA GLN VAL SER LEU ILE SEQRES 33 A 491 MET VAL GLY GLY GLU LEU SER SER ASN GLY SER GLY PRO SEQRES 34 A 491 LEU SER ILE ASP SER PRO LEU SER VAL GLU LEU TYR ARG SEQRES 35 A 491 VAL SER MET LEU MET PRO THR LYS GLU VAL GLY ILE SER SEQRES 36 A 491 LEU ASN GLY ILE LEU GLY GLU ARG GLN ASP GLU ILE LEU SEQRES 37 A 491 ASP LEU LEU VAL ARG GLN LYS LYS ALA VAL LEU ILE ASP SEQRES 38 A 491 PRO VAL GLU SER GLN THR GLU LEU ARG GLU MODRES 4NK6 MLY A 88 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 89 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 110 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 118 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 171 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 181 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 191 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 200 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 243 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 255 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 304 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 336 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 337 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 338 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 356 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 361 LYS N-DIMETHYL-LYSINE MODRES 4NK6 MLY A 440 LYS N-DIMETHYL-LYSINE HET MLY A 88 11 HET MLY A 89 11 HET MLY A 110 11 HET MLY A 118 11 HET MLY A 171 11 HET MLY A 181 11 HET MLY A 191 11 HET MLY A 200 11 HET MLY A 243 11 HET MLY A 255 11 HET MLY A 304 11 HET MLY A 336 11 HET MLY A 337 11 HET MLY A 338 11 HET MLY A 356 11 HET MLY A 361 11 HET MLY A 440 11 HETNAM MLY N-DIMETHYL-LYSINE FORMUL 1 MLY 17(C8 H18 N2 O2) FORMUL 2 HOH *167(H2 O) HELIX 1 1 THR A 82 MLY A 88 1 7 HELIX 2 2 GLU A 106 GLY A 114 1 9 HELIX 3 3 GLY A 115 MLY A 118 5 4 HELIX 4 4 MET A 119 LYS A 127 1 9 HELIX 5 5 LEU A 142 VAL A 149 1 8 HELIX 6 6 THR A 265 LYS A 273 1 9 SHEET 1 A 8 LYS A 97 ARG A 102 0 SHEET 2 A 8 GLN A 131 SER A 136 -1 O MET A 134 N THR A 99 SHEET 3 A 8 ILE A 168 VAL A 170 1 O LEU A 169 N ILE A 133 SHEET 4 A 8 ILE A 195 SER A 197 1 O VAL A 196 N VAL A 170 SHEET 5 A 8 VAL A 231 THR A 233 1 O LEU A 232 N ILE A 195 SHEET 6 A 8 GLY A 258 SER A 262 1 O GLY A 258 N VAL A 231 SHEET 7 A 8 TYR A 291 TYR A 296 1 O TYR A 294 N ILE A 261 SHEET 8 A 8 TYR A 314 HIS A 319 1 O ASP A 317 N PHE A 293 SHEET 1 B13 GLY A 138 ASN A 141 0 SHEET 2 B13 GLY A 174 ILE A 178 1 O ILE A 175 N VAL A 140 SHEET 3 B13 MLY A 200 THR A 204 1 O MLY A 200 N PHE A 176 SHEET 4 B13 GLN A 238 ALA A 242 1 O TRP A 240 N ILE A 203 SHEET 5 B13 THR A 278 ILE A 282 1 O ILE A 282 N ILE A 241 SHEET 6 B13 VAL A 302 MLY A 304 1 O VAL A 302 N ILE A 281 SHEET 7 B13 ILE A 326 ALA A 328 1 O ILE A 326 N VAL A 303 SHEET 8 B13 PHE A 351 PHE A 353 1 O PHE A 351 N ILE A 327 SHEET 9 B13 ILE A 375 ALA A 377 1 O ILE A 375 N ILE A 352 SHEET 10 B13 LEU A 398 TRP A 400 1 O LEU A 398 N VAL A 376 SHEET 11 B13 ILE A 420 TYR A 423 1 O LYS A 421 N LEU A 399 SHEET 12 B13 SER A 459 VAL A 463 1 O ILE A 461 N LEU A 422 SHEET 13 B13 SER A 482 TYR A 486 1 O GLU A 484 N MET A 462 SHEET 1 C 5 LEU A 154 SER A 158 0 SHEET 2 C 5 VAL A 161 ALA A 164 -1 O VAL A 163 N SER A 155 SHEET 3 C 5 GLU A 184 SER A 188 1 O ARG A 186 N TYR A 162 SHEET 4 C 5 SER A 207 SER A 212 1 O TRP A 211 N LEU A 187 SHEET 5 C 5 GLY A 217 LEU A 218 -1 O GLY A 217 N SER A 212 SHEET 1 D14 LEU A 154 SER A 158 0 SHEET 2 D14 VAL A 161 ALA A 164 -1 O VAL A 163 N SER A 155 SHEET 3 D14 GLU A 184 SER A 188 1 O ARG A 186 N TYR A 162 SHEET 4 D14 SER A 207 SER A 212 1 O TRP A 211 N LEU A 187 SHEET 5 D14 LYS A 245 ALA A 247 1 O LYS A 245 N VAL A 208 SHEET 6 D14 GLU A 285 ALA A 287 1 O GLU A 285 N MET A 246 SHEET 7 D14 THR A 307 ARG A 309 1 O THR A 307 N PHE A 286 SHEET 8 D14 ASP A 331 TYR A 333 1 O ASP A 331 N TYR A 308 SHEET 9 D14 MLY A 356 HIS A 358 1 O MLY A 356 N VAL A 332 SHEET 10 D14 GLU A 380 TYR A 382 1 O GLU A 380 N SER A 357 SHEET 11 D14 ARG A 403 ILE A 405 1 O ARG A 403 N ILE A 381 SHEET 12 D14 VAL A 426 MET A 428 1 O VAL A 426 N VAL A 404 SHEET 13 D14 GLU A 466 SER A 468 1 O GLU A 466 N ALA A 427 SHEET 14 D14 SER A 489 MET A 490 1 O SER A 489 N LEU A 467 SHEET 1 E 6 ILE A 341 SER A 344 0 SHEET 2 E 6 VAL A 365 ASP A 368 1 O ASP A 368 N ILE A 343 SHEET 3 E 6 ILE A 389 TYR A 392 1 O TYR A 392 N LEU A 367 SHEET 4 E 6 ILE A 412 ARG A 415 1 O ARG A 415 N LEU A 391 SHEET 5 E 6 MET A 433 HIS A 438 1 O TYR A 436 N VAL A 414 SHEET 6 E 6 GLY A 473 ILE A 477 1 O SER A 476 N GLY A 437 LINK C LEU A 87 N MLY A 88 1555 1555 1.33 LINK C MLY A 88 N MLY A 89 1555 1555 1.33 LINK C MLY A 89 N ILE A 90 1555 1555 1.33 LINK C LEU A 109 N MLY A 110 1555 1555 1.33 LINK C MLY A 110 N GLU A 111 1555 1555 1.33 LINK C ASN A 117 N MLY A 118 1555 1555 1.33 LINK C MLY A 118 N MET A 119 1555 1555 1.33 LINK C VAL A 170 N MLY A 171 1555 1555 1.32 LINK C MLY A 171 N GLU A 172 1555 1555 1.32 LINK C SER A 180 N MLY A 181 1555 1555 1.33 LINK C MLY A 181 N THR A 182 1555 1555 1.33 LINK C GLU A 190 N MLY A 191 1555 1555 1.33 LINK C MLY A 191 N GLY A 192 1555 1555 1.33 LINK C GLY A 199 N MLY A 200 1555 1555 1.33 LINK C MLY A 200 N MET A 201 1555 1555 1.33 LINK C ALA A 242 N MLY A 243 1555 1555 1.34 LINK C MLY A 243 N THR A 244 1555 1555 1.32 LINK C SER A 254 N MLY A 255 1555 1555 1.34 LINK C MLY A 255 N SER A 256 1555 1555 1.33 LINK C VAL A 303 N MLY A 304 1555 1555 1.33 LINK C MLY A 304 N GLY A 305 1555 1555 1.33 LINK C THR A 335 N MLY A 336 1555 1555 1.33 LINK C MLY A 336 N MLY A 337 1555 1555 1.33 LINK C MLY A 337 N MLY A 338 1555 1555 1.33 LINK C MLY A 338 N HIS A 339 1555 1555 1.33 LINK C ASN A 355 N MLY A 356 1555 1555 1.32 LINK C MLY A 356 N SER A 357 1555 1555 1.33 LINK C ASN A 360 N MLY A 361 1555 1555 1.33 LINK C MLY A 361 N LEU A 362 1555 1555 1.33 LINK C ILE A 439 N MLY A 440 1555 1555 1.33 LINK C MLY A 440 N ASP A 441 1555 1555 1.33 CRYST1 126.616 126.616 97.708 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007898 0.004560 0.000000 0.00000 SCALE2 0.000000 0.009120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010235 0.00000