HEADER TRANSFERASE 12-NOV-13 4NKE TITLE THE EFFECTS OF LYSINE 200 AND PHENYLALANINE 239 FARNESYL PYROPHOSPHATE TITLE 2 SYNTHASE (FPPS) MUTATIONS ON THE CATALYTIC ACTIVITY, CRYSTAL TITLE 3 STRUCTURE AND INHIBITION BY NITROGEN CONTAINING BISPHOSPHONATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10, 2.5.1.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11 DERIVATIVE KEYWDS ALPHA-HELICAL PRENYLTRANSFERASE, ISOPRENE BIOSYNTHESIS, LIPID KEYWDS 2 SYNTHESIS, STEROID BIOSYNTHESIS, TRANSFERASE, ISOPRENOID PATHWAY, KEYWDS 3 CHOLESTEROL SYNTHESIS, BISPHOSPHONATES EXPDTA X-RAY DIFFRACTION AUTHOR M.K.TSOUMPRA,B.L.BARNETT,J.R.C.MUNIZ,R.L.WALTER,F.H.EBETINO,F.VON AUTHOR 2 DELFT,R.G.G.RUSSELL,U.OPPERMANN,J.E.DUNFORD REVDAT 3 20-SEP-23 4NKE 1 REMARK SEQADV LINK REVDAT 2 31-JAN-18 4NKE 1 AUTHOR JRNL HETSYN REVDAT 1 19-NOV-14 4NKE 0 JRNL AUTH M.K.TSOUMPRA,B.L.BARNETT,J.R.C.MUNIZ,R.L.WALTER,F.H.EBETINO, JRNL AUTH 2 F.VON DELFT,R.G.G.RUSSELL,U.OPPERMANN,J.E.DUNFORD JRNL TITL THE EFFECTS OF LYSINE 200 AND PHENYLALANINE 239 FARNESYL JRNL TITL 2 PYROPHOSPHATE SYNTHASE (FPPS) MUTATIONS ON THE CATALYTIC JRNL TITL 3 ACTIVITY, CRYSTAL STRUCTURE AND INHIBITION BY NITROGEN JRNL TITL 4 CONTAINING BISPHOSPHONATES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 72107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3636 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5027 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2336 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4753 REMARK 3 BIN R VALUE (WORKING SET) : 0.2328 REMARK 3 BIN FREE R VALUE : 0.2462 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.45 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 274 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2712 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 404 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.20860 REMARK 3 B22 (A**2) : 1.20860 REMARK 3 B33 (A**2) : -2.41730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.169 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.063 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3073 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4202 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1485 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 81 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 458 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3073 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 382 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4251 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.87 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.97 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.52 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|9 - A|28 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.6884 30.1293 9.5651 REMARK 3 T TENSOR REMARK 3 T11: -0.0461 T22: 0.0164 REMARK 3 T33: -0.0137 T12: 0.0550 REMARK 3 T13: 0.0439 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.3952 L22: 2.0924 REMARK 3 L33: 1.3809 L12: -1.4056 REMARK 3 L13: 0.1181 L23: 0.4724 REMARK 3 S TENSOR REMARK 3 S11: 0.0963 S12: -0.1904 S13: 0.0209 REMARK 3 S21: 0.0575 S22: -0.0602 S23: 0.0469 REMARK 3 S31: -0.3255 S32: -0.0982 S33: -0.0361 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|29 - A|52 } REMARK 3 ORIGIN FOR THE GROUP (A): 15.7249 25.7462 15.7311 REMARK 3 T TENSOR REMARK 3 T11: -0.0337 T22: 0.0102 REMARK 3 T33: -0.0457 T12: 0.0099 REMARK 3 T13: 0.0131 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.4969 L22: 0.7236 REMARK 3 L33: 3.6422 L12: 0.6038 REMARK 3 L13: -0.5590 L23: -0.1663 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: -0.2241 S13: -0.0343 REMARK 3 S21: 0.1551 S22: 0.0046 S23: 0.1029 REMARK 3 S31: 0.0941 S32: -0.0377 S33: 0.0298 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|53 - A|78 } REMARK 3 ORIGIN FOR THE GROUP (A): -7.2009 24.9075 0.8693 REMARK 3 T TENSOR REMARK 3 T11: -0.0417 T22: 0.0457 REMARK 3 T33: 0.0352 T12: -0.0024 REMARK 3 T13: -0.0007 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 2.1506 L22: 0.7938 REMARK 3 L33: 0.3070 L12: 0.7464 REMARK 3 L13: 0.1238 L23: 0.1823 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: -0.2401 S13: -0.0474 REMARK 3 S21: -0.0300 S22: 0.0198 S23: 0.0832 REMARK 3 S31: 0.0003 S32: -0.1374 S33: 0.0207 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|79 - A|124 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.4500 29.7932 2.9338 REMARK 3 T TENSOR REMARK 3 T11: -0.0261 T22: -0.0206 REMARK 3 T33: -0.0148 T12: 0.0061 REMARK 3 T13: -0.0054 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.0259 L22: 0.9176 REMARK 3 L33: 0.3249 L12: 0.5235 REMARK 3 L13: 0.0759 L23: -0.1296 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: -0.1631 S13: 0.0819 REMARK 3 S21: 0.0816 S22: -0.0231 S23: 0.0528 REMARK 3 S31: -0.0411 S32: -0.0324 S33: -0.0076 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|125 - A|152 } REMARK 3 ORIGIN FOR THE GROUP (A): 10.4035 17.8628 6.2783 REMARK 3 T TENSOR REMARK 3 T11: -0.0148 T22: 0.0052 REMARK 3 T33: 0.0081 T12: -0.0039 REMARK 3 T13: -0.0044 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 3.0346 L22: 1.3439 REMARK 3 L33: 0.3840 L12: 1.4647 REMARK 3 L13: -0.1827 L23: -0.2477 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: -0.3039 S13: -0.1191 REMARK 3 S21: 0.0229 S22: -0.0651 S23: -0.0047 REMARK 3 S31: 0.0287 S32: -0.0720 S33: 0.0194 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|153 - A|177 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.1201 18.9906 -8.6020 REMARK 3 T TENSOR REMARK 3 T11: -0.0184 T22: -0.0281 REMARK 3 T33: 0.0110 T12: 0.0104 REMARK 3 T13: -0.0090 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.4898 L22: 1.4712 REMARK 3 L33: 1.4469 L12: 0.8598 REMARK 3 L13: -0.6942 L23: -1.0327 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: 0.0141 S13: -0.0144 REMARK 3 S21: -0.0778 S22: 0.0348 S23: 0.0776 REMARK 3 S31: 0.0923 S32: -0.0008 S33: -0.0137 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|178 - A|206 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.8868 29.1324 -18.7199 REMARK 3 T TENSOR REMARK 3 T11: -0.0158 T22: -0.0114 REMARK 3 T33: -0.0092 T12: 0.0117 REMARK 3 T13: -0.0159 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.2138 L22: 1.5442 REMARK 3 L33: 1.7535 L12: 1.4252 REMARK 3 L13: -0.7509 L23: -0.9827 REMARK 3 S TENSOR REMARK 3 S11: -0.0799 S12: 0.1526 S13: -0.0861 REMARK 3 S21: -0.1535 S22: 0.0407 S23: -0.0470 REMARK 3 S31: 0.1288 S32: 0.0625 S33: 0.0392 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|207 - A|249 } REMARK 3 ORIGIN FOR THE GROUP (A): 2.2828 26.1947 -12.9169 REMARK 3 T TENSOR REMARK 3 T11: -0.0291 T22: -0.0265 REMARK 3 T33: 0.0090 T12: -0.0042 REMARK 3 T13: -0.0176 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.9128 L22: 0.6106 REMARK 3 L33: 0.4535 L12: 0.4313 REMARK 3 L13: 0.0393 L23: -0.2288 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: 0.0405 S13: 0.0228 REMARK 3 S21: -0.0887 S22: 0.0341 S23: 0.0875 REMARK 3 S31: 0.0453 S32: -0.0605 S33: -0.0216 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|250 - A|332 } REMARK 3 ORIGIN FOR THE GROUP (A): 15.0614 42.6014 -19.7486 REMARK 3 T TENSOR REMARK 3 T11: -0.0247 T22: -0.0132 REMARK 3 T33: 0.0140 T12: -0.0124 REMARK 3 T13: -0.0122 T23: 0.0513 REMARK 3 L TENSOR REMARK 3 L11: 1.3002 L22: 0.3788 REMARK 3 L33: 0.3380 L12: 0.2473 REMARK 3 L13: 0.3265 L23: 0.2779 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.2106 S13: 0.2381 REMARK 3 S21: -0.0671 S22: 0.0546 S23: 0.0667 REMARK 3 S31: -0.0544 S32: 0.0533 S33: -0.0247 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { A|333 - A|350 } REMARK 3 ORIGIN FOR THE GROUP (A): -6.6158 30.8105 -11.7895 REMARK 3 T TENSOR REMARK 3 T11: -0.0152 T22: -0.0066 REMARK 3 T33: 0.0056 T12: -0.0061 REMARK 3 T13: -0.0263 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.5966 L22: 0.0009 REMARK 3 L33: 0.3957 L12: 0.1445 REMARK 3 L13: -0.4399 L23: -1.1070 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: -0.0570 S13: 0.0569 REMARK 3 S21: 0.0511 S22: 0.0887 S23: 0.0251 REMARK 3 S31: -0.0343 S32: -0.0328 S33: -0.0973 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000083313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72107 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 37.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : 0.11800 REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CP6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, PEG6000, 10% ETHYLENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.25500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.63000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.62750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.63000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.88250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.63000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.63000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.62750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.63000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.63000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.88250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.25500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 531 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ASP A 8 REMARK 465 ASP A 31 REMARK 465 GLU A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 ARG A 351 REMARK 465 ARG A 352 REMARK 465 LYS A 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 9 CG1 CG2 REMARK 470 GLN A 15 CD OE1 NE2 REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 HIS A 35 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 53 OG1 CG2 REMARK 470 GLU A 149 OE1 OE2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 124 -68.91 -101.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ASP A 107 OD2 87.8 REMARK 620 3 RIS A 404 O12 96.2 172.3 REMARK 620 4 RIS A 404 O15 90.3 80.6 92.9 REMARK 620 5 HOH A 754 O 83.4 99.2 87.8 173.7 REMARK 620 6 HOH A 756 O 170.6 86.4 90.4 96.0 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 107 OD2 89.1 REMARK 620 3 RIS A 404 O15 96.0 81.6 REMARK 620 4 HOH A 757 O 171.9 92.9 92.0 REMARK 620 5 HOH A 758 O 86.8 97.5 177.0 85.2 REMARK 620 6 HOH A 759 O 88.3 174.2 93.5 90.4 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 RIS A 404 O11 91.2 REMARK 620 3 RIS A 404 O17 96.9 93.0 REMARK 620 4 HOH A 760 O 170.3 94.6 90.7 REMARK 620 5 HOH A 761 O 86.4 86.3 176.6 86.1 REMARK 620 6 HOH A 762 O 88.5 174.9 92.1 85.1 88.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RIS A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YQ7 RELATED DB: PDB REMARK 900 FARNESYL PYROPHOSPHATE SYNTHASE NATIVE COMPLEXED WITH ONE OF THE REMARK 900 LIGANDS REMARK 900 RELATED ID: 1ZW5 RELATED DB: PDB REMARK 900 FARNESYL PYROPHOSPHATE SYNTHASE NATIVE COMPLEXED WITH ONE OF THE REMARK 900 TWO LIGANDS REMARK 900 RELATED ID: 4NG6 RELATED DB: PDB REMARK 900 RELATED ID: 4N9U RELATED DB: PDB REMARK 900 RELATED ID: 4NKF RELATED DB: PDB REMARK 900 RELATED ID: 4NUA RELATED DB: PDB DBREF 4NKE A 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 4NKE MET A -21 UNP P14324 EXPRESSION TAG SEQADV 4NKE GLY A -20 UNP P14324 EXPRESSION TAG SEQADV 4NKE SER A -19 UNP P14324 EXPRESSION TAG SEQADV 4NKE SER A -18 UNP P14324 EXPRESSION TAG SEQADV 4NKE HIS A -17 UNP P14324 EXPRESSION TAG SEQADV 4NKE HIS A -16 UNP P14324 EXPRESSION TAG SEQADV 4NKE HIS A -15 UNP P14324 EXPRESSION TAG SEQADV 4NKE HIS A -14 UNP P14324 EXPRESSION TAG SEQADV 4NKE HIS A -13 UNP P14324 EXPRESSION TAG SEQADV 4NKE HIS A -12 UNP P14324 EXPRESSION TAG SEQADV 4NKE SER A -11 UNP P14324 EXPRESSION TAG SEQADV 4NKE SER A -10 UNP P14324 EXPRESSION TAG SEQADV 4NKE GLY A -9 UNP P14324 EXPRESSION TAG SEQADV 4NKE ARG A -8 UNP P14324 EXPRESSION TAG SEQADV 4NKE GLU A -7 UNP P14324 EXPRESSION TAG SEQADV 4NKE ASN A -6 UNP P14324 EXPRESSION TAG SEQADV 4NKE LEU A -5 UNP P14324 EXPRESSION TAG SEQADV 4NKE TYR A -4 UNP P14324 EXPRESSION TAG SEQADV 4NKE PHE A -3 UNP P14324 EXPRESSION TAG SEQADV 4NKE GLN A -2 UNP P14324 EXPRESSION TAG SEQADV 4NKE GLY A -1 UNP P14324 EXPRESSION TAG SEQADV 4NKE HIS A 0 UNP P14324 EXPRESSION TAG SEQADV 4NKE THR A 53 UNP P14324 ALA 119 CONFLICT SEQADV 4NKE ALA A 239 UNP P14324 PHE 305 ENGINEERED MUTATION SEQRES 1 A 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 A 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 A 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 A 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 A 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN THR ILE GLY GLY SEQRES 7 A 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 A 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 A 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 A 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 A 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 A 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 A 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 A 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 A 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 A 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 A 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 A 375 LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 A 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 A 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 A 375 ALA GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 A 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 A 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 A 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 A 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 A 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 A 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 A 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 A 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET RIS A 404 17 HET IPE A 405 14 HET EDO A 406 4 HET EDO A 407 4 HETNAM MG MAGNESIUM ION HETNAM RIS 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN RIS RISEDRONATE HETSYN IPE ISOPENTENYL PYROPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG 3(MG 2+) FORMUL 5 RIS C7 H11 N O7 P2 FORMUL 6 IPE C5 H12 O7 P2 FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 HOH *404(H2 O) HELIX 1 1 VAL A 9 GLN A 19 1 11 HELIX 2 2 HIS A 20 THR A 29 1 10 HELIX 3 3 GLU A 30 GLU A 30 5 1 HELIX 4 4 HIS A 35 GLU A 37 5 3 HELIX 5 5 ILE A 38 THR A 53 1 16 HELIX 6 6 TYR A 58 VAL A 72 1 15 HELIX 7 7 GLU A 73 GLN A 77 5 5 HELIX 8 8 ASP A 78 ASP A 107 1 30 HELIX 9 9 TRP A 118 LYS A 121 5 4 HELIX 10 10 VAL A 124 LEU A 126 5 3 HELIX 11 11 ASP A 127 ARG A 148 1 22 HELIX 12 12 TYR A 152 ALA A 178 1 27 HELIX 13 13 ASP A 184 PHE A 188 5 5 HELIX 14 14 THR A 189 THR A 201 1 13 HELIX 15 15 THR A 201 PHE A 206 1 6 HELIX 16 16 PHE A 206 ALA A 217 1 12 HELIX 17 17 GLY A 221 GLY A 250 1 30 HELIX 18 18 ASP A 251 GLY A 256 1 6 HELIX 19 19 SER A 268 ALA A 278 1 11 HELIX 20 20 THR A 279 TYR A 290 1 12 HELIX 21 21 GLU A 294 LEU A 308 1 15 HELIX 22 22 ASP A 309 ALA A 333 1 25 HELIX 23 23 PRO A 337 TYR A 349 1 13 SHEET 1 A 2 THR A 111 ARG A 112 0 SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112 LINK OD2 ASP A 103 MG MG A 401 1555 1555 2.05 LINK OD1 ASP A 103 MG MG A 403 1555 1555 2.11 LINK OD2 ASP A 107 MG MG A 401 1555 1555 2.12 LINK OD2 ASP A 107 MG MG A 403 1555 1555 2.11 LINK OD2 ASP A 243 MG MG A 402 1555 1555 2.09 LINK MG MG A 401 O12 RIS A 404 1555 1555 2.07 LINK MG MG A 401 O15 RIS A 404 1555 1555 2.07 LINK MG MG A 401 O HOH A 754 1555 1555 2.13 LINK MG MG A 401 O HOH A 756 1555 1555 2.10 LINK MG MG A 402 O11 RIS A 404 1555 1555 2.00 LINK MG MG A 402 O17 RIS A 404 1555 1555 2.01 LINK MG MG A 402 O HOH A 760 1555 1555 2.20 LINK MG MG A 402 O HOH A 761 1555 1555 2.13 LINK MG MG A 402 O HOH A 762 1555 1555 2.09 LINK MG MG A 403 O15 RIS A 404 1555 1555 2.03 LINK MG MG A 403 O HOH A 757 1555 1555 2.17 LINK MG MG A 403 O HOH A 758 1555 1555 2.07 LINK MG MG A 403 O HOH A 759 1555 1555 2.06 CISPEP 1 ALA A 334 PRO A 335 0 5.73 SITE 1 AC1 6 ASP A 103 ASP A 107 MG A 403 RIS A 404 SITE 2 AC1 6 HOH A 754 HOH A 756 SITE 1 AC2 5 ASP A 243 RIS A 404 HOH A 760 HOH A 761 SITE 2 AC2 5 HOH A 762 SITE 1 AC3 7 ASP A 103 ASP A 107 MG A 401 RIS A 404 SITE 2 AC3 7 HOH A 757 HOH A 758 HOH A 759 SITE 1 AC4 23 ASP A 103 ASP A 107 ARG A 112 GLN A 171 SITE 2 AC4 23 LYS A 200 THR A 201 GLN A 240 ASP A 243 SITE 3 AC4 23 LYS A 257 MG A 401 MG A 402 MG A 403 SITE 4 AC4 23 IPE A 405 HOH A 754 HOH A 755 HOH A 756 SITE 5 AC4 23 HOH A 757 HOH A 759 HOH A 760 HOH A 761 SITE 6 AC4 23 HOH A 762 HOH A 763 HOH A 893 SITE 1 AC5 15 GLY A 56 LYS A 57 ARG A 60 GLN A 96 SITE 2 AC5 15 ARG A 113 THR A 201 TYR A 204 RIS A 404 SITE 3 AC5 15 EDO A 406 HOH A 503 HOH A 764 HOH A 765 SITE 4 AC5 15 HOH A 766 HOH A 767 HOH A 768 SITE 1 AC6 6 LYS A 57 VAL A 254 THR A 255 IPE A 405 SITE 2 AC6 6 HOH A 589 HOH A 899 SITE 1 AC7 5 TYR A 140 ARG A 141 LEU A 161 GLN A 162 SITE 2 AC7 5 HOH A 898 CRYST1 111.260 111.260 66.510 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015035 0.00000