HEADER TRANSFERASE 12-NOV-13 4NKF TITLE THE EFFECTS OF LYSINE 200 AND PHENYLALANINE 239 FARNESYL PYROPHOSPHATE TITLE 2 SYNTHASE (FPPS) MUTATIONS ON THE CATALYTIC ACTIVITY, CRYSTAL TITLE 3 STRUCTURE AND INHIBITION BY NITROGEN CONTAINING BISPHOSPHONATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10, 2.5.1.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11 DERIVATIVE KEYWDS ALPHA-HELICAL PRENYLTRANSFERASE, ISOPRENE BIOSYNTHESIS, LIPID KEYWDS 2 SYNTHESIS, STEROID BIOSYNTHESIS, TRANSFERASE, ISOPRENOID PATHWAY, KEYWDS 3 CHOLESTEROL SYNTHESIS, BISPHOSPHONATES EXPDTA X-RAY DIFFRACTION AUTHOR M.K.TSOUMPRA,B.L.BARNETT,J.R.C.MUNIZ,R.L.WALTER,F.H.EBETINO,F.VON AUTHOR 2 DELFT,R.G.G.RUSSELL,U.OPPERMANN,J.E.DUNFORD REVDAT 3 20-SEP-23 4NKF 1 REMARK SEQADV LINK REVDAT 2 31-JAN-18 4NKF 1 AUTHOR JRNL REVDAT 1 19-NOV-14 4NKF 0 JRNL AUTH M.K.TSOUMPRA,B.L.BARNETT,J.R.C.MUNIZ,R.L.WALTER,F.H.EBETINO, JRNL AUTH 2 F.VON DELFT,R.G.G.RUSSELL,U.OPPERMANN,J.E.DUNFORD JRNL TITL THE EFFECTS OF LYSINE 200 AND PHENYLALANINE 239 FARNESYL JRNL TITL 2 PYROPHOSPHATE SYNTHASE (FPPS) MUTATIONS ON THE CATALYTIC JRNL TITL 3 ACTIVITY, CRYSTAL STRUCTURE AND INHIBITION BY NITROGEN JRNL TITL 4 CONTAINING BISPHOSPHONATES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1481 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2830 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2175 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2697 REMARK 3 BIN R VALUE (WORKING SET) : 0.2157 REMARK 3 BIN FREE R VALUE : 0.2533 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2690 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.59310 REMARK 3 B22 (A**2) : 2.59310 REMARK 3 B33 (A**2) : -5.18610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.251 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.145 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2817 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3826 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1318 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 72 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 404 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2817 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 358 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3485 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.90 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.73 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.94 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|8 - A|29 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.5352 30.3570 8.3078 REMARK 3 T TENSOR REMARK 3 T11: -0.2624 T22: 0.0109 REMARK 3 T33: 0.1799 T12: 0.1463 REMARK 3 T13: 0.1464 T23: -0.0803 REMARK 3 L TENSOR REMARK 3 L11: 2.3535 L22: 3.8168 REMARK 3 L33: 1.9177 L12: -0.1198 REMARK 3 L13: 0.1735 L23: 0.2978 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: -0.1404 S13: 0.0663 REMARK 3 S21: 0.1179 S22: -0.1354 S23: 0.0863 REMARK 3 S31: -0.2148 S32: -0.2865 S33: 0.0491 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|30 - A|52 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.2288 25.5167 15.9432 REMARK 3 T TENSOR REMARK 3 T11: -0.2089 T22: -0.1134 REMARK 3 T33: 0.2344 T12: 0.0343 REMARK 3 T13: 0.0785 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.4615 L22: 1.2372 REMARK 3 L33: 4.1422 L12: -0.1106 REMARK 3 L13: 0.6765 L23: -1.7286 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: -0.2671 S13: -0.0281 REMARK 3 S21: 0.1385 S22: -0.0794 S23: 0.1834 REMARK 3 S31: 0.1208 S32: -0.0263 S33: 0.1033 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|53 - A|78 } REMARK 3 ORIGIN FOR THE GROUP (A): -6.0352 25.7910 0.2769 REMARK 3 T TENSOR REMARK 3 T11: -0.2074 T22: 0.0127 REMARK 3 T33: 0.2901 T12: 0.0789 REMARK 3 T13: 0.0053 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 4.1199 L22: 1.0212 REMARK 3 L33: 2.8648 L12: 0.0996 REMARK 3 L13: 0.3746 L23: 0.9363 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.2199 S13: -0.0130 REMARK 3 S21: -0.0244 S22: -0.0154 S23: 0.1615 REMARK 3 S31: -0.0016 S32: -0.4448 S33: 0.0070 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|79 - A|152 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.3457 25.4464 4.1038 REMARK 3 T TENSOR REMARK 3 T11: -0.1803 T22: -0.1526 REMARK 3 T33: 0.1665 T12: 0.0329 REMARK 3 T13: 0.0023 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.7915 L22: 1.8339 REMARK 3 L33: 1.4828 L12: 0.8558 REMARK 3 L13: 0.4483 L23: 0.1649 REMARK 3 S TENSOR REMARK 3 S11: 0.0890 S12: -0.3571 S13: 0.0165 REMARK 3 S21: 0.1324 S22: -0.0285 S23: 0.0575 REMARK 3 S31: -0.0013 S32: -0.2227 S33: -0.0605 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|153 - A|177 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.0577 18.8801 -8.5204 REMARK 3 T TENSOR REMARK 3 T11: -0.1593 T22: -0.1588 REMARK 3 T33: 0.2599 T12: 0.0537 REMARK 3 T13: -0.0447 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 3.1697 L22: 0.8395 REMARK 3 L33: 2.7730 L12: 1.2128 REMARK 3 L13: -1.1375 L23: -1.4554 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.0344 S13: -0.1631 REMARK 3 S21: -0.0819 S22: 0.0692 S23: 0.1832 REMARK 3 S31: 0.1775 S32: -0.0791 S33: -0.0593 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|178 - A|268 } REMARK 3 ORIGIN FOR THE GROUP (A): 10.3615 30.4150 -14.3282 REMARK 3 T TENSOR REMARK 3 T11: -0.1705 T22: -0.1010 REMARK 3 T33: 0.1918 T12: 0.0230 REMARK 3 T13: -0.0631 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.9357 L22: 1.0093 REMARK 3 L33: 0.8128 L12: 0.4382 REMARK 3 L13: -0.0737 L23: -0.0795 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: 0.1203 S13: 0.0951 REMARK 3 S21: -0.1449 S22: 0.0151 S23: 0.1698 REMARK 3 S31: 0.0283 S32: -0.0142 S33: 0.0331 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|269 - A|294 } REMARK 3 ORIGIN FOR THE GROUP (A): 23.4353 43.5694 -24.7685 REMARK 3 T TENSOR REMARK 3 T11: -0.1338 T22: 0.0124 REMARK 3 T33: 0.1648 T12: -0.0599 REMARK 3 T13: -0.0003 T23: 0.0803 REMARK 3 L TENSOR REMARK 3 L11: 1.7742 L22: 1.5702 REMARK 3 L33: 1.3416 L12: 0.1293 REMARK 3 L13: 0.7804 L23: 0.8123 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: 0.4333 S13: 0.3117 REMARK 3 S21: -0.2022 S22: 0.1724 S23: -0.1019 REMARK 3 S31: -0.1058 S32: 0.2332 S33: -0.2146 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|295 - A|332 } REMARK 3 ORIGIN FOR THE GROUP (A): 7.6930 41.5671 -21.6073 REMARK 3 T TENSOR REMARK 3 T11: -0.1860 T22: -0.1275 REMARK 3 T33: 0.2795 T12: 0.0299 REMARK 3 T13: -0.0604 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 2.6366 L22: 1.3323 REMARK 3 L33: 0.8297 L12: 1.0309 REMARK 3 L13: 0.4327 L23: 0.4371 REMARK 3 S TENSOR REMARK 3 S11: 0.0891 S12: 0.3761 S13: 0.4130 REMARK 3 S21: -0.2383 S22: -0.0713 S23: 0.0080 REMARK 3 S31: -0.1737 S32: 0.0378 S33: -0.0178 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|333 - A|350 } REMARK 3 ORIGIN FOR THE GROUP (A): -6.7331 30.3323 -12.4416 REMARK 3 T TENSOR REMARK 3 T11: -0.2789 T22: -0.0859 REMARK 3 T33: 0.2812 T12: 0.0468 REMARK 3 T13: -0.0705 T23: -0.0775 REMARK 3 L TENSOR REMARK 3 L11: 4.1250 L22: 0.0000 REMARK 3 L33: 3.1197 L12: -1.5247 REMARK 3 L13: -1.6447 L23: -0.6804 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: -0.1079 S13: -0.0441 REMARK 3 S21: 0.1064 S22: 0.1522 S23: 0.1270 REMARK 3 S31: -0.1211 S32: 0.0335 S33: -0.1420 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000083314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29167 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 42.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CP6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, PEG 6000, 10% ETHYLENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.76500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.72500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.88250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.72500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.64750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.72500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.72500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.88250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.72500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.72500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.64750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.76500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 649 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ASP A 31 REMARK 465 GLU A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 ARG A 351 REMARK 465 ARG A 352 REMARK 465 LYS A 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 8 CG OD1 OD2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 ASP A 16 CG OD1 OD2 REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 THR A 53 OG1 CG2 REMARK 470 LYS A 121 NZ REMARK 470 GLU A 149 OE1 OE2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 VAL A 183 CG1 CG2 REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 LYS A 287 NZ REMARK 470 GLU A 296 CD OE1 OE2 REMARK 470 ASP A 309 CG OD1 OD2 REMARK 470 LYS A 347 CD CE NZ REMARK 470 LYS A 350 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 124 -71.42 -107.31 REMARK 500 ALA A 178 56.79 -113.95 REMARK 500 THR A 201 -35.63 -138.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ASP A 107 OD2 89.1 REMARK 620 3 210 A 404 O2 98.4 171.5 REMARK 620 4 210 A 404 O9 93.1 79.1 96.5 REMARK 620 5 HOH A 598 O 166.6 86.3 87.2 98.3 REMARK 620 6 HOH A 600 O 86.5 96.9 87.5 176.0 81.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 107 OD2 91.1 REMARK 620 3 210 A 404 O9 99.8 84.6 REMARK 620 4 HOH A 595 O 167.2 98.5 89.5 REMARK 620 5 HOH A 596 O 87.6 94.9 172.6 83.2 REMARK 620 6 HOH A 597 O 88.2 179.2 95.0 82.3 85.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 210 A 404 O3 92.5 REMARK 620 3 210 A 404 O10 97.2 95.3 REMARK 620 4 HOH A 591 O 86.6 87.2 175.4 REMARK 620 5 HOH A 592 O 163.1 102.2 89.9 85.8 REMARK 620 6 HOH A 593 O 85.3 177.7 85.3 92.4 80.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 210 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N9U RELATED DB: PDB REMARK 900 RELATED ID: 4NG6 RELATED DB: PDB REMARK 900 RELATED ID: 1YQ7 RELATED DB: PDB REMARK 900 ONE OF FIRST NATIVE STRUCTURES IN THE SERIES WITH A LIGAND REMARK 900 RELATED ID: 1ZW5 RELATED DB: PDB REMARK 900 FARNESYL PYROPHOSPHATE SYNTHASE NATIVE COMPLEXED WITH ONE OF THE REMARK 900 TWO LIGANDS REMARK 900 RELATED ID: 4NKE RELATED DB: PDB REMARK 900 RELATED ID: 4NUA RELATED DB: PDB DBREF 4NKF A 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 4NKF MET A -21 UNP P14324 EXPRESSION TAG SEQADV 4NKF GLY A -20 UNP P14324 EXPRESSION TAG SEQADV 4NKF SER A -19 UNP P14324 EXPRESSION TAG SEQADV 4NKF SER A -18 UNP P14324 EXPRESSION TAG SEQADV 4NKF HIS A -17 UNP P14324 EXPRESSION TAG SEQADV 4NKF HIS A -16 UNP P14324 EXPRESSION TAG SEQADV 4NKF HIS A -15 UNP P14324 EXPRESSION TAG SEQADV 4NKF HIS A -14 UNP P14324 EXPRESSION TAG SEQADV 4NKF HIS A -13 UNP P14324 EXPRESSION TAG SEQADV 4NKF HIS A -12 UNP P14324 EXPRESSION TAG SEQADV 4NKF SER A -11 UNP P14324 EXPRESSION TAG SEQADV 4NKF SER A -10 UNP P14324 EXPRESSION TAG SEQADV 4NKF GLY A -9 UNP P14324 EXPRESSION TAG SEQADV 4NKF ARG A -8 UNP P14324 EXPRESSION TAG SEQADV 4NKF GLU A -7 UNP P14324 EXPRESSION TAG SEQADV 4NKF ASN A -6 UNP P14324 EXPRESSION TAG SEQADV 4NKF LEU A -5 UNP P14324 EXPRESSION TAG SEQADV 4NKF TYR A -4 UNP P14324 EXPRESSION TAG SEQADV 4NKF PHE A -3 UNP P14324 EXPRESSION TAG SEQADV 4NKF GLN A -2 UNP P14324 EXPRESSION TAG SEQADV 4NKF GLY A -1 UNP P14324 EXPRESSION TAG SEQADV 4NKF HIS A 0 UNP P14324 EXPRESSION TAG SEQADV 4NKF THR A 53 UNP P14324 ALA 119 CONFLICT SEQADV 4NKF ALA A 239 UNP P14324 PHE 305 ENGINEERED MUTATION SEQRES 1 A 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 A 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 A 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 A 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 A 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN THR ILE GLY GLY SEQRES 7 A 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 A 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 A 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 A 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 A 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 A 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 A 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 A 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 A 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 A 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 A 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 A 375 LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 A 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 A 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 A 375 ALA GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 A 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 A 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 A 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 A 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 A 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 A 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 A 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 A 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET 210 A 404 13 HET EDO A 405 4 HET PEG A 406 7 HETNAM MG MAGNESIUM ION HETNAM 210 PAMIDRONATE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN 210 (3-AMINO-1-HYDROXY-1-PHOSPHONO-PROPYL)PHOSPHONIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG 3(MG 2+) FORMUL 5 210 C3 H11 N O7 P2 FORMUL 6 EDO C2 H6 O2 FORMUL 7 PEG C4 H10 O3 FORMUL 8 HOH *165(H2 O) HELIX 1 1 ASP A 8 HIS A 20 1 13 HELIX 2 2 HIS A 20 GLU A 30 1 11 HELIX 3 3 HIS A 35 GLU A 37 5 3 HELIX 4 4 ILE A 38 THR A 53 1 16 HELIX 5 5 TYR A 58 VAL A 72 1 15 HELIX 6 6 GLU A 73 GLN A 77 5 5 HELIX 7 7 ASP A 78 ASP A 107 1 30 HELIX 8 8 TRP A 118 LYS A 121 5 4 HELIX 9 9 VAL A 124 LEU A 126 5 3 HELIX 10 10 ASP A 127 ARG A 148 1 22 HELIX 11 11 TYR A 152 ALA A 178 1 27 HELIX 12 12 ASP A 184 PHE A 188 5 5 HELIX 13 13 THR A 189 THR A 201 1 13 HELIX 14 14 THR A 201 PHE A 206 1 6 HELIX 15 15 PHE A 206 ALA A 217 1 12 HELIX 16 16 GLY A 221 GLY A 250 1 30 HELIX 17 17 ASP A 251 GLY A 256 1 6 HELIX 18 18 SER A 268 ALA A 278 1 11 HELIX 19 19 THR A 279 TYR A 290 1 12 HELIX 20 20 GLU A 294 LEU A 308 1 15 HELIX 21 21 ASP A 309 ALA A 333 1 25 HELIX 22 22 PRO A 338 TYR A 349 1 12 SHEET 1 A 2 THR A 111 ARG A 112 0 SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112 LINK OD2 ASP A 103 MG MG A 401 1555 1555 1.99 LINK OD1 ASP A 103 MG MG A 403 1555 1555 1.90 LINK OD2 ASP A 107 MG MG A 401 1555 1555 2.25 LINK OD2 ASP A 107 MG MG A 403 1555 1555 2.14 LINK OD2 ASP A 243 MG MG A 402 1555 1555 2.18 LINK MG MG A 401 O2 210 A 404 1555 1555 2.08 LINK MG MG A 401 O9 210 A 404 1555 1555 2.12 LINK MG MG A 401 O HOH A 598 1555 1555 1.94 LINK MG MG A 401 O HOH A 600 1555 1555 2.07 LINK MG MG A 402 O3 210 A 404 1555 1555 1.95 LINK MG MG A 402 O10 210 A 404 1555 1555 2.02 LINK MG MG A 402 O HOH A 591 1555 1555 2.08 LINK MG MG A 402 O HOH A 592 1555 1555 2.00 LINK MG MG A 402 O HOH A 593 1555 1555 2.03 LINK MG MG A 403 O9 210 A 404 1555 1555 2.00 LINK MG MG A 403 O HOH A 595 1555 1555 1.98 LINK MG MG A 403 O HOH A 596 1555 1555 1.96 LINK MG MG A 403 O HOH A 597 1555 1555 2.01 CISPEP 1 ALA A 334 PRO A 335 0 6.09 SITE 1 AC1 6 ASP A 103 ASP A 107 MG A 403 210 A 404 SITE 2 AC1 6 HOH A 598 HOH A 600 SITE 1 AC2 5 ASP A 243 210 A 404 HOH A 591 HOH A 592 SITE 2 AC2 5 HOH A 593 SITE 1 AC3 7 ASP A 103 ASP A 107 MG A 401 210 A 404 SITE 2 AC3 7 HOH A 595 HOH A 596 HOH A 597 SITE 1 AC4 21 ASP A 103 ASP A 107 ARG A 112 LYS A 200 SITE 2 AC4 21 THR A 201 ASP A 243 LYS A 257 MG A 401 SITE 3 AC4 21 MG A 402 MG A 403 HOH A 546 HOH A 591 SITE 4 AC4 21 HOH A 592 HOH A 593 HOH A 594 HOH A 595 SITE 5 AC4 21 HOH A 597 HOH A 598 HOH A 600 HOH A 601 SITE 6 AC4 21 HOH A 602 SITE 1 AC5 5 TYR A 140 ARG A 141 GLN A 162 HOH A 583 SITE 2 AC5 5 HOH A 611 SITE 1 AC6 6 TYR A 119 LYS A 121 GLY A 125 LEU A 126 SITE 2 AC6 6 HOH A 519 HOH A 645 CRYST1 111.450 111.450 67.530 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008973 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014808 0.00000