HEADER IMMUNE SYSTEM/CHAPERONE 12-NOV-13 4NKO TITLE CRYSTAL STRUCTURE OF ENGINEERED ANTI-EE SCFV ANTIBODY FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENGINEERED SCFV; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBODY FRAGMENT, HEXA-HISTIDINE BINDING, IMMUNE SYSTEM, IMMUNE KEYWDS 2 SYSTEM-CHAPERONE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.KALYONCU,J.HYUN,J.C.PAI,J.L.JOHNSON,K.ETZMINGER,A.JAIN,D.HEANER AUTHOR 2 JR.,I.A.MOLARES,T.M.TRUSKETT,J.A.MAYNARD,R.L.LIEBERMAN REVDAT 7 16-OCT-24 4NKO 1 REMARK REVDAT 6 27-MAR-24 4NKO 1 COMPND SOURCE REMARK DBREF REVDAT 6 2 1 SEQRES HELIX SHEET SSBOND REVDAT 6 3 1 ATOM REVDAT 5 20-SEP-23 4NKO 1 REMARK REVDAT 4 22-NOV-17 4NKO 1 REMARK REVDAT 3 03-SEP-14 4NKO 1 JRNL REVDAT 2 09-APR-14 4NKO 1 JRNL REVDAT 1 12-MAR-14 4NKO 0 JRNL AUTH S.KALYONCU,J.HYUN,J.C.PAI,J.L.JOHNSON,K.ENTZMINGER,A.JAIN, JRNL AUTH 2 D.P.HEANER,I.A.MORALES,T.M.TRUSKETT,J.A.MAYNARD, JRNL AUTH 3 R.L.LIEBERMAN JRNL TITL EFFECTS OF PROTEIN ENGINEERING AND RATIONAL MUTAGENESIS ON JRNL TITL 2 CRYSTAL LATTICE OF SINGLE CHAIN ANTIBODY FRAGMENTS. JRNL REF PROTEINS V. 82 1884 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 24615866 JRNL DOI 10.1002/PROT.24542 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.310 REMARK 3 R VALUE (WORKING SET) : 0.308 REMARK 3 FREE R VALUE : 0.344 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2203 - 5.5463 0.95 2778 134 0.2786 0.2994 REMARK 3 2 5.5463 - 4.4038 0.97 2765 142 0.2904 0.3656 REMARK 3 3 4.4038 - 3.8475 0.87 2451 124 0.3427 0.3693 REMARK 3 4 3.8475 - 3.4960 0.90 2500 120 0.4259 0.4555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.670 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 45.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5522 REMARK 3 ANGLE : 1.249 7473 REMARK 3 CHIRALITY : 0.046 807 REMARK 3 PLANARITY : 0.005 963 REMARK 3 DIHEDRAL : 14.516 2007 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK MONOCHROMATOR REMARK 200 HIGH-RESOLUTION DOUBLE-CRYSTAL REMARK 200 SI(220) SAGITTAL FOCUSING, REMARK 200 ROSENBAUM-ROCK VERTICAL FOCUSING REMARK 200 MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11089 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.490 REMARK 200 RESOLUTION RANGE LOW (A) : 42.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KTR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF 3D5/HIS_683 (8MG/ML IN REMARK 280 HBS) WERE GROWN AT ROOM TEMPERATURE WITH 0.2M KI, 0.001M REMARK 280 GUANIDINIUM HCL, 18% PEG 8000. THESE CRYSTALS APPEARED IN 2-3 REMARK 280 DAYS., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.15K, PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 142.20650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 142.20650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.29300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.45850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.29300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.45850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 142.20650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.29300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.45850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 142.20650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.29300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.45850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 ALA A -3 REMARK 465 ASP A -2 REMARK 465 TYR A -1 REMARK 465 LYS A 0 REMARK 465 GLY A 116 REMARK 465 GLY A 117 REMARK 465 SER A 118 REMARK 465 GLY A 119 REMARK 465 GLY A 120 REMARK 465 GLY A 121 REMARK 465 GLY A 122 REMARK 465 SER A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 SER A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 SER A 133 REMARK 465 SER A 255 REMARK 465 GLY A 256 REMARK 465 ALA A 257 REMARK 465 ASP A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 MET B -4 REMARK 465 ALA B -3 REMARK 465 ASP B -2 REMARK 465 TYR B -1 REMARK 465 LYS B 0 REMARK 465 GLY B 116 REMARK 465 GLY B 117 REMARK 465 SER B 118 REMARK 465 GLY B 119 REMARK 465 GLY B 120 REMARK 465 GLY B 121 REMARK 465 GLY B 122 REMARK 465 SER B 123 REMARK 465 GLY B 124 REMARK 465 GLY B 125 REMARK 465 GLY B 126 REMARK 465 GLY B 127 REMARK 465 SER B 128 REMARK 465 SER B 129 REMARK 465 GLY B 130 REMARK 465 GLY B 131 REMARK 465 GLY B 132 REMARK 465 SER B 133 REMARK 465 SER B 255 REMARK 465 GLY B 256 REMARK 465 ALA B 257 REMARK 465 ASP B 258 REMARK 465 HIS B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 MET C -4 REMARK 465 ALA C -3 REMARK 465 ASP C -2 REMARK 465 TYR C -1 REMARK 465 LYS C 0 REMARK 465 GLY C 116 REMARK 465 GLY C 117 REMARK 465 SER C 118 REMARK 465 GLY C 119 REMARK 465 GLY C 120 REMARK 465 GLY C 121 REMARK 465 GLY C 122 REMARK 465 SER C 123 REMARK 465 GLY C 124 REMARK 465 GLY C 125 REMARK 465 GLY C 126 REMARK 465 GLY C 127 REMARK 465 SER C 128 REMARK 465 SER C 129 REMARK 465 GLY C 130 REMARK 465 GLY C 131 REMARK 465 GLY C 132 REMARK 465 SER C 133 REMARK 465 SER C 255 REMARK 465 GLY C 256 REMARK 465 ALA C 257 REMARK 465 ASP C 258 REMARK 465 HIS C 259 REMARK 465 HIS C 260 REMARK 465 HIS C 261 REMARK 465 HIS C 262 REMARK 465 HIS C 263 REMARK 465 HIS C 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 12 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 PRO C 12 C - N - CA ANGL. DEV. = 14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 52 -60.67 -107.64 REMARK 500 LYS A 55 70.62 54.47 REMARK 500 VAL A 56 -102.89 65.26 REMARK 500 PRO A 147 92.04 -57.12 REMARK 500 ASN A 187 -72.27 -59.17 REMARK 500 ARG A 217 -74.09 -101.27 REMARK 500 ALA A 231 -58.95 -128.06 REMARK 500 SER A 233 -163.29 -128.09 REMARK 500 TYR A 235 80.87 35.96 REMARK 500 SER A 236 142.20 -36.06 REMARK 500 ARG A 238 160.99 179.29 REMARK 500 ALA A 240 77.88 62.42 REMARK 500 TRP A 244 40.34 71.58 REMARK 500 LEU B 52 -60.53 -108.71 REMARK 500 VAL B 56 -103.01 64.77 REMARK 500 ASN B 187 -72.10 -58.16 REMARK 500 ARG B 217 -73.17 -101.51 REMARK 500 ALA B 231 -58.83 -127.84 REMARK 500 TYR B 235 68.50 34.09 REMARK 500 SER B 236 84.09 51.66 REMARK 500 ALA B 240 77.97 61.80 REMARK 500 TRP B 244 39.98 71.75 REMARK 500 LEU C 52 -61.11 -109.97 REMARK 500 VAL C 56 -45.09 67.55 REMARK 500 ASN C 187 -71.98 -58.82 REMARK 500 ARG C 217 -72.99 -101.77 REMARK 500 ALA C 231 -58.23 -128.03 REMARK 500 TYR C 235 68.77 34.17 REMARK 500 SER C 236 79.56 57.69 REMARK 500 ALA C 240 78.05 61.84 REMARK 500 TRP C 244 40.35 71.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NN8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ENGINEERED ANTIBODY FRAGMENT BASED ON 3D5 REMARK 900 RELATED ID: 1KTR RELATED DB: PDB REMARK 900 ANTI-HIS TAG ANTIBODY 3D5 SINGLE-CHAIN FRAGMENT (SCFV) IN COMPLEX REMARK 900 WITH A OLIGOHISTIDINE PEPTIDE REMARK 900 RELATED ID: 4NKD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ENGINEERED ANTI-EE SCFV ANTIBODY FRAGMENT REMARK 900 RELATED ID: 4NKM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ENGINEERED ANTI-EE SCFV ANTIBODY FRAGMENT DBREF 4NKO A -4 264 PDB 4NKO 4NKO -4 264 DBREF 4NKO B -4 264 PDB 4NKO 4NKO -4 264 DBREF 4NKO C -4 264 PDB 4NKO 4NKO -4 264 SEQRES 1 A 269 MET ALA ASP TYR LYS ASP ILE VAL MET THR GLN THR PRO SEQRES 2 A 269 SER SER LEU PRO VAL SER LEU GLY ASP GLN ALA SER ILE SEQRES 3 A 269 SER CYS ARG SER SER GLN SER ILE VAL HIS SER ASN GLY SEQRES 4 A 269 ASN THR TYR LEU GLU TRP TYR LEU GLN LYS PRO GLY GLN SEQRES 5 A 269 SER PRO LYS LEU LEU ILE TYR LYS VAL SER ASN ARG PHE SEQRES 6 A 269 SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SER GLY SEQRES 7 A 269 THR ASP PHE THR LEU LYS ILE SER ARG VAL GLU ALA GLU SEQRES 8 A 269 ASP LEU GLY ILE TYR TYR CYS PHE GLN GLY SER LEU VAL SEQRES 9 A 269 PRO PRO THR PHE GLY ALA GLY THR LYS LEU GLU LEU LYS SEQRES 10 A 269 ARG GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY SEQRES 11 A 269 GLY GLY SER SER GLY GLY GLY SER GLN VAL GLN LEU GLN SEQRES 12 A 269 GLN SER GLY PRO GLU ASP VAL LYS PRO GLY ALA SER VAL SEQRES 13 A 269 LYS ILE SER CYS LYS ALA SER GLY TYR THR PHE THR ASP SEQRES 14 A 269 TYR TYR MET ASN TRP VAL LYS GLN SER PRO GLY LYS GLY SEQRES 15 A 269 LEU GLU TRP ILE GLY ASP ILE ASN PRO ASN ASN GLY GLY SEQRES 16 A 269 THR SER TYR ASN GLN LYS PHE LYS GLY ARG ALA THR LEU SEQRES 17 A 269 THR VAL ASP LYS SER SER SER THR ALA TYR MET GLU LEU SEQRES 18 A 269 ARG SER LEU THR SER GLU ASP SER SER VAL TYR TYR CYS SEQRES 19 A 269 ALA ALA SER SER PRO TYR SER MET ARG ALA ALA MET ASP SEQRES 20 A 269 TYR TRP GLY GLN GLY THR THR VAL THR VAL SER ALA SER SEQRES 21 A 269 GLY ALA ASP HIS HIS HIS HIS HIS HIS SEQRES 1 B 269 MET ALA ASP TYR LYS ASP ILE VAL MET THR GLN THR PRO SEQRES 2 B 269 SER SER LEU PRO VAL SER LEU GLY ASP GLN ALA SER ILE SEQRES 3 B 269 SER CYS ARG SER SER GLN SER ILE VAL HIS SER ASN GLY SEQRES 4 B 269 ASN THR TYR LEU GLU TRP TYR LEU GLN LYS PRO GLY GLN SEQRES 5 B 269 SER PRO LYS LEU LEU ILE TYR LYS VAL SER ASN ARG PHE SEQRES 6 B 269 SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SER GLY SEQRES 7 B 269 THR ASP PHE THR LEU LYS ILE SER ARG VAL GLU ALA GLU SEQRES 8 B 269 ASP LEU GLY ILE TYR TYR CYS PHE GLN GLY SER LEU VAL SEQRES 9 B 269 PRO PRO THR PHE GLY ALA GLY THR LYS LEU GLU LEU LYS SEQRES 10 B 269 ARG GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY SEQRES 11 B 269 GLY GLY SER SER GLY GLY GLY SER GLN VAL GLN LEU GLN SEQRES 12 B 269 GLN SER GLY PRO GLU ASP VAL LYS PRO GLY ALA SER VAL SEQRES 13 B 269 LYS ILE SER CYS LYS ALA SER GLY TYR THR PHE THR ASP SEQRES 14 B 269 TYR TYR MET ASN TRP VAL LYS GLN SER PRO GLY LYS GLY SEQRES 15 B 269 LEU GLU TRP ILE GLY ASP ILE ASN PRO ASN ASN GLY GLY SEQRES 16 B 269 THR SER TYR ASN GLN LYS PHE LYS GLY ARG ALA THR LEU SEQRES 17 B 269 THR VAL ASP LYS SER SER SER THR ALA TYR MET GLU LEU SEQRES 18 B 269 ARG SER LEU THR SER GLU ASP SER SER VAL TYR TYR CYS SEQRES 19 B 269 ALA ALA SER SER PRO TYR SER MET ARG ALA ALA MET ASP SEQRES 20 B 269 TYR TRP GLY GLN GLY THR THR VAL THR VAL SER ALA SER SEQRES 21 B 269 GLY ALA ASP HIS HIS HIS HIS HIS HIS SEQRES 1 C 269 MET ALA ASP TYR LYS ASP ILE VAL MET THR GLN THR PRO SEQRES 2 C 269 SER SER LEU PRO VAL SER LEU GLY ASP GLN ALA SER ILE SEQRES 3 C 269 SER CYS ARG SER SER GLN SER ILE VAL HIS SER ASN GLY SEQRES 4 C 269 ASN THR TYR LEU GLU TRP TYR LEU GLN LYS PRO GLY GLN SEQRES 5 C 269 SER PRO LYS LEU LEU ILE TYR LYS VAL SER ASN ARG PHE SEQRES 6 C 269 SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SER GLY SEQRES 7 C 269 THR ASP PHE THR LEU LYS ILE SER ARG VAL GLU ALA GLU SEQRES 8 C 269 ASP LEU GLY ILE TYR TYR CYS PHE GLN GLY SER LEU VAL SEQRES 9 C 269 PRO PRO THR PHE GLY ALA GLY THR LYS LEU GLU LEU LYS SEQRES 10 C 269 ARG GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY SEQRES 11 C 269 GLY GLY SER SER GLY GLY GLY SER GLN VAL GLN LEU GLN SEQRES 12 C 269 GLN SER GLY PRO GLU ASP VAL LYS PRO GLY ALA SER VAL SEQRES 13 C 269 LYS ILE SER CYS LYS ALA SER GLY TYR THR PHE THR ASP SEQRES 14 C 269 TYR TYR MET ASN TRP VAL LYS GLN SER PRO GLY LYS GLY SEQRES 15 C 269 LEU GLU TRP ILE GLY ASP ILE ASN PRO ASN ASN GLY GLY SEQRES 16 C 269 THR SER TYR ASN GLN LYS PHE LYS GLY ARG ALA THR LEU SEQRES 17 C 269 THR VAL ASP LYS SER SER SER THR ALA TYR MET GLU LEU SEQRES 18 C 269 ARG SER LEU THR SER GLU ASP SER SER VAL TYR TYR CYS SEQRES 19 C 269 ALA ALA SER SER PRO TYR SER MET ARG ALA ALA MET ASP SEQRES 20 C 269 TYR TRP GLY GLN GLY THR THR VAL THR VAL SER ALA SER SEQRES 21 C 269 GLY ALA ASP HIS HIS HIS HIS HIS HIS HELIX 1 1 GLU A 84 LEU A 88 5 5 HELIX 2 2 THR A 161 TYR A 165 5 5 HELIX 3 3 GLU B 84 LEU B 88 5 5 HELIX 4 4 GLU C 84 LEU C 88 5 5 HELIX 5 5 THR C 161 TYR C 165 5 5 SHEET 1 A 4 MET A 4 THR A 7 0 SHEET 2 A 4 ALA A 19 SER A 25 -1 O SER A 22 N THR A 7 SHEET 3 A 4 ASP A 75 ILE A 80 -1 O PHE A 76 N CYS A 23 SHEET 4 A 4 PHE A 67 GLY A 71 -1 N SER A 68 O LYS A 79 SHEET 1 B 6 SER A 10 PRO A 12 0 SHEET 2 B 6 THR A 107 GLU A 110 1 O GLU A 110 N LEU A 11 SHEET 3 B 6 GLY A 89 GLN A 95 -1 N TYR A 91 O THR A 107 SHEET 4 B 6 LEU A 38 GLN A 43 -1 N GLU A 39 O PHE A 94 SHEET 5 B 6 LYS A 50 TYR A 54 -1 O LEU A 52 N TRP A 40 SHEET 6 B 6 ASN A 58 ARG A 59 -1 O ASN A 58 N TYR A 54 SHEET 1 C 4 SER A 10 PRO A 12 0 SHEET 2 C 4 THR A 107 GLU A 110 1 O GLU A 110 N LEU A 11 SHEET 3 C 4 GLY A 89 GLN A 95 -1 N TYR A 91 O THR A 107 SHEET 4 C 4 THR A 102 PHE A 103 -1 O THR A 102 N GLN A 95 SHEET 1 D 4 GLN A 136 GLN A 139 0 SHEET 2 D 4 VAL A 151 SER A 158 -1 O SER A 158 N GLN A 136 SHEET 3 D 4 THR A 211 LEU A 216 -1 O MET A 214 N ILE A 153 SHEET 4 D 4 ALA A 201 ASP A 206 -1 N ASP A 206 O THR A 211 SHEET 1 E 6 GLU A 143 VAL A 145 0 SHEET 2 E 6 THR A 248 VAL A 252 1 O THR A 251 N GLU A 143 SHEET 3 E 6 SER A 225 ALA A 230 -1 N SER A 225 O VAL A 250 SHEET 4 E 6 MET A 167 SER A 173 -1 N GLN A 172 O VAL A 226 SHEET 5 E 6 GLY A 177 ILE A 184 -1 O ILE A 181 N TRP A 169 SHEET 6 E 6 SER A 192 TYR A 193 -1 O SER A 192 N ASP A 183 SHEET 1 F 4 THR B 5 THR B 7 0 SHEET 2 F 4 ALA B 19 ARG B 24 -1 O SER B 22 N THR B 7 SHEET 3 F 4 ASP B 75 ILE B 80 -1 O PHE B 76 N CYS B 23 SHEET 4 F 4 PHE B 67 GLY B 71 -1 N SER B 68 O LYS B 79 SHEET 1 G 6 SER B 10 PRO B 12 0 SHEET 2 G 6 THR B 107 GLU B 110 1 O LYS B 108 N LEU B 11 SHEET 3 G 6 GLY B 89 GLN B 95 -1 N TYR B 91 O THR B 107 SHEET 4 G 6 LEU B 38 GLN B 43 -1 N GLU B 39 O PHE B 94 SHEET 5 G 6 LYS B 50 TYR B 54 -1 O LEU B 52 N TRP B 40 SHEET 6 G 6 ASN B 58 ARG B 59 -1 O ASN B 58 N TYR B 54 SHEET 1 H 4 SER B 10 PRO B 12 0 SHEET 2 H 4 THR B 107 GLU B 110 1 O LYS B 108 N LEU B 11 SHEET 3 H 4 GLY B 89 GLN B 95 -1 N TYR B 91 O THR B 107 SHEET 4 H 4 THR B 102 PHE B 103 -1 O THR B 102 N GLN B 95 SHEET 1 I 4 GLN B 136 GLN B 139 0 SHEET 2 I 4 VAL B 151 SER B 158 -1 O SER B 158 N GLN B 136 SHEET 3 I 4 THR B 211 LEU B 216 -1 O ALA B 212 N CYS B 155 SHEET 4 I 4 ALA B 201 ASP B 206 -1 N ASP B 206 O THR B 211 SHEET 1 J 6 GLU B 143 VAL B 145 0 SHEET 2 J 6 THR B 248 VAL B 252 1 O THR B 251 N GLU B 143 SHEET 3 J 6 SER B 225 ALA B 230 -1 N SER B 225 O VAL B 250 SHEET 4 J 6 MET B 167 SER B 173 -1 N GLN B 172 O VAL B 226 SHEET 5 J 6 GLY B 177 ASN B 185 -1 O ILE B 184 N MET B 167 SHEET 6 J 6 GLY B 190 TYR B 193 -1 O SER B 192 N ASP B 183 SHEET 1 K 4 MET C 4 THR C 7 0 SHEET 2 K 4 ALA C 19 SER C 25 -1 O SER C 22 N THR C 7 SHEET 3 K 4 ASP C 75 ILE C 80 -1 O PHE C 76 N CYS C 23 SHEET 4 K 4 PHE C 67 GLY C 71 -1 N SER C 68 O LYS C 79 SHEET 1 L 6 SER C 10 PRO C 12 0 SHEET 2 L 6 THR C 107 GLU C 110 1 O GLU C 110 N LEU C 11 SHEET 3 L 6 GLY C 89 GLN C 95 -1 N GLY C 89 O LEU C 109 SHEET 4 L 6 LEU C 38 GLN C 43 -1 N GLN C 43 O ILE C 90 SHEET 5 L 6 PRO C 49 TYR C 54 -1 O LEU C 52 N TRP C 40 SHEET 6 L 6 ASN C 58 ARG C 59 -1 O ASN C 58 N TYR C 54 SHEET 1 M 4 SER C 10 PRO C 12 0 SHEET 2 M 4 THR C 107 GLU C 110 1 O GLU C 110 N LEU C 11 SHEET 3 M 4 GLY C 89 GLN C 95 -1 N GLY C 89 O LEU C 109 SHEET 4 M 4 THR C 102 PHE C 103 -1 O THR C 102 N GLN C 95 SHEET 1 N 4 GLN C 136 GLN C 139 0 SHEET 2 N 4 VAL C 151 SER C 158 -1 O SER C 158 N GLN C 136 SHEET 3 N 4 THR C 211 LEU C 216 -1 O ALA C 212 N CYS C 155 SHEET 4 N 4 ALA C 201 ASP C 206 -1 N ASP C 206 O THR C 211 SHEET 1 O 6 GLU C 143 VAL C 145 0 SHEET 2 O 6 THR C 248 VAL C 252 1 O THR C 251 N GLU C 143 SHEET 3 O 6 SER C 225 ALA C 230 -1 N SER C 225 O VAL C 250 SHEET 4 O 6 MET C 167 GLN C 172 -1 N GLN C 172 O VAL C 226 SHEET 5 O 6 LEU C 178 ILE C 184 -1 O ILE C 181 N TRP C 169 SHEET 6 O 6 SER C 192 TYR C 193 -1 O SER C 192 N ASP C 183 SSBOND 1 CYS A 23 CYS A 93 1555 1555 2.04 SSBOND 2 CYS B 23 CYS B 93 1555 1555 2.04 SSBOND 3 CYS B 155 CYS B 229 1555 1555 2.04 SSBOND 4 CYS C 23 CYS C 93 1555 1555 2.04 SSBOND 5 CYS C 155 CYS C 229 1555 1555 2.04 CISPEP 1 THR A 7 PRO A 8 0 -3.49 CISPEP 2 VAL A 99 PRO A 100 0 -5.34 CISPEP 3 SER A 233 PRO A 234 0 8.52 CISPEP 4 TYR A 243 TRP A 244 0 10.91 CISPEP 5 THR B 7 PRO B 8 0 -3.24 CISPEP 6 VAL B 99 PRO B 100 0 -5.56 CISPEP 7 SER B 233 PRO B 234 0 8.59 CISPEP 8 TYR B 243 TRP B 244 0 11.60 CISPEP 9 THR C 7 PRO C 8 0 -4.52 CISPEP 10 VAL C 99 PRO C 100 0 -6.04 CISPEP 11 SER C 233 PRO C 234 0 8.53 CISPEP 12 TYR C 243 TRP C 244 0 11.88 CRYST1 60.586 104.917 284.413 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003516 0.00000