HEADER RNA BINDING PROTEIN/RNA 13-NOV-13 4NL3 TITLE CRYSTAL STRUCTURE OF LISTERIA MONOCYTOGENES HFQ IN COMPLEX WITH U6 RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HFQ; COMPND 3 CHAIN: D, A, B, C, E, F, J, G, H, I, K, L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-R(*UP*UP*UP*UP*UP*U)-3'; COMPND 7 CHAIN: R, Z; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: HFQ, LMHCC_1277; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES KEYWDS LSM/SM PROTEINS, RNA CHAPERONE, SRNA, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.KOVACH,R.G.BRENNAN REVDAT 4 20-SEP-23 4NL3 1 REMARK REVDAT 3 22-NOV-17 4NL3 1 AUTHOR REMARK REVDAT 2 01-OCT-14 4NL3 1 JRNL REVDAT 1 10-SEP-14 4NL3 0 JRNL AUTH A.R.KOVACH,K.E.HOFF,J.T.CANTY,J.ORANS,R.G.BRENNAN JRNL TITL RECOGNITION OF U-RICH RNA BY HFQ FROM THE GRAM-POSITIVE JRNL TITL 2 PATHOGEN LISTERIA MONOCYTOGENES. JRNL REF RNA V. 20 1548 2014 JRNL REFN ISSN 1355-8382 JRNL PMID 25150227 JRNL DOI 10.1261/RNA.044032.113 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 17760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6795 - 5.6296 0.98 2914 163 0.2223 0.2548 REMARK 3 2 5.6296 - 4.4696 1.00 2927 161 0.2021 0.2593 REMARK 3 3 4.4696 - 3.9050 1.00 2945 152 0.2045 0.2540 REMARK 3 4 3.9050 - 3.5481 1.00 2910 150 0.2322 0.3046 REMARK 3 5 3.5481 - 3.2938 0.96 2838 157 0.2484 0.3441 REMARK 3 6 3.2938 - 3.0997 0.80 2319 124 0.2527 0.3710 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7292 REMARK 3 ANGLE : 1.182 9859 REMARK 3 CHIRALITY : 0.069 1137 REMARK 3 PLANARITY : 0.005 1236 REMARK 3 DIHEDRAL : 16.606 2733 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 4242 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 4242 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 4242 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN E REMARK 3 ATOM PAIRS NUMBER : 4242 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 5 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 4242 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 6 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN G REMARK 3 ATOM PAIRS NUMBER : 4242 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 7 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN H REMARK 3 ATOM PAIRS NUMBER : 4242 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 8 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN I REMARK 3 ATOM PAIRS NUMBER : 4242 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 9 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN J REMARK 3 ATOM PAIRS NUMBER : 4242 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 10 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN K REMARK 3 ATOM PAIRS NUMBER : 4242 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 11 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN L REMARK 3 ATOM PAIRS NUMBER : 4242 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN R REMARK 3 SELECTION : CHAIN Z REMARK 3 ATOM PAIRS NUMBER : 136 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17828 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.30300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4NL2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% 1,2-PROPANEDIOL, 100 MM HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.01400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.96700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.01400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 61.96700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, B, J, G, H, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E, F, I, K, L, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO D 74 REMARK 465 ASP D 75 REMARK 465 ALA D 76 REMARK 465 GLU D 77 REMARK 465 MET A 1 REMARK 465 PRO A 74 REMARK 465 ASP A 75 REMARK 465 ALA A 76 REMARK 465 GLU A 77 REMARK 465 MET B 1 REMARK 465 ASN B 73 REMARK 465 PRO B 74 REMARK 465 ASP B 75 REMARK 465 ALA B 76 REMARK 465 GLU B 77 REMARK 465 ASP C 75 REMARK 465 ALA C 76 REMARK 465 GLU C 77 REMARK 465 MET E 1 REMARK 465 PRO E 74 REMARK 465 ASP E 75 REMARK 465 ALA E 76 REMARK 465 GLU E 77 REMARK 465 ALA F 76 REMARK 465 GLU F 77 REMARK 465 PRO J 74 REMARK 465 ASP J 75 REMARK 465 ALA J 76 REMARK 465 GLU J 77 REMARK 465 PRO G 74 REMARK 465 ASP G 75 REMARK 465 ALA G 76 REMARK 465 GLU G 77 REMARK 465 MET H 1 REMARK 465 ASN H 73 REMARK 465 PRO H 74 REMARK 465 ASP H 75 REMARK 465 ALA H 76 REMARK 465 GLU H 77 REMARK 465 ASP I 75 REMARK 465 ALA I 76 REMARK 465 GLU I 77 REMARK 465 PRO K 74 REMARK 465 ASP K 75 REMARK 465 ALA K 76 REMARK 465 GLU K 77 REMARK 465 ASP L 75 REMARK 465 ALA L 76 REMARK 465 GLU L 77 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN D 29 OD1 REMARK 470 PHE D 31 CD1 CD2 CE1 CE2 CZ REMARK 470 ARG D 36 CZ NH1 NH2 REMARK 470 GLN C 3 CG CD OE1 NE2 REMARK 470 PHE C 31 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS E 2 CG CD CE NZ REMARK 470 LYS E 20 CG CD CE NZ REMARK 470 PHE E 31 CD1 CD2 CE1 CE2 CZ REMARK 470 PHE F 31 CD1 CD2 CE1 CE2 CZ REMARK 470 MET J 1 CG SD CE REMARK 470 LYS J 2 CG CD CE NZ REMARK 470 ASN J 29 OD1 REMARK 470 ARG J 36 CZ NH1 NH2 REMARK 470 PHE G 31 CD1 CD2 CE1 CE2 CZ REMARK 470 MET I 1 CG SD CE REMARK 470 GLN I 3 CG CD OE1 NE2 REMARK 470 PHE I 31 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS K 2 CG CD CE NZ REMARK 470 LYS K 20 CG CD CE NZ REMARK 470 PHE K 31 CD1 CD2 CE1 CE2 CZ REMARK 470 MET L 1 CG SD CE REMARK 470 PHE L 31 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY I 5 C GLN I 6 N 0.297 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 72 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 GLY F 4 N - CA - C ANGL. DEV. = -24.8 DEGREES REMARK 500 GLY I 5 CA - C - N ANGL. DEV. = -13.6 DEGREES REMARK 500 GLY K 5 N - CA - C ANGL. DEV. = -15.2 DEGREES REMARK 500 ASN L 73 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS D 2 133.99 -174.54 REMARK 500 GLN D 3 -86.35 -139.55 REMARK 500 GLN D 6 52.85 -102.92 REMARK 500 GLN A 6 47.74 -106.30 REMARK 500 ASP A 41 -155.79 -124.35 REMARK 500 LEU A 72 -157.68 -126.03 REMARK 500 GLN B 6 49.00 -146.39 REMARK 500 GLN C 3 -146.24 -166.14 REMARK 500 ASP C 41 -158.92 -127.88 REMARK 500 GLN E 6 43.27 -144.57 REMARK 500 ASP E 41 -152.41 -122.12 REMARK 500 LEU E 72 -167.22 -117.18 REMARK 500 LYS F 2 130.09 -173.03 REMARK 500 ASP F 41 -154.73 -124.21 REMARK 500 LYS J 2 130.24 -173.76 REMARK 500 GLN J 3 -77.54 -137.74 REMARK 500 GLN J 6 52.18 -104.83 REMARK 500 ASP J 41 -155.02 -120.04 REMARK 500 LEU J 72 -167.87 -117.81 REMARK 500 ASP G 41 -145.09 -118.85 REMARK 500 ASP H 41 -152.40 -123.69 REMARK 500 GLN I 3 -136.81 -155.22 REMARK 500 ASP I 41 -155.85 -124.78 REMARK 500 LEU I 72 -167.42 -107.42 REMARK 500 LYS K 2 -141.28 58.63 REMARK 500 ASP K 41 -157.94 -126.51 REMARK 500 GLN L 3 -113.43 -139.66 REMARK 500 GLN L 6 54.21 -105.48 REMARK 500 ASP L 41 -151.05 -119.94 REMARK 500 LEU L 72 -169.13 -102.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY F 5 GLN F 6 148.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY I 5 -17.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NL2 RELATED DB: PDB DBREF 4NL3 D 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NL3 A 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NL3 B 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NL3 C 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NL3 E 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NL3 F 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NL3 J 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NL3 G 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NL3 H 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NL3 I 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NL3 K 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NL3 L 1 77 UNP B8DG33 B8DG33_LISMH 1 77 DBREF 4NL3 R 17 22 PDB 4NL3 4NL3 17 22 DBREF 4NL3 Z 27 32 PDB 4NL3 4NL3 27 32 SEQRES 1 D 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 D 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 D 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 D 77 PHE ASP ASN PHE THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 D 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 D 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 A 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 A 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 A 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 A 77 PHE ASP ASN PHE THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 A 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 A 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 B 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 B 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 B 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 B 77 PHE ASP ASN PHE THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 B 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 B 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 C 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 C 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 C 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 C 77 PHE ASP ASN PHE THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 C 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 C 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 E 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 E 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 E 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 E 77 PHE ASP ASN PHE THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 E 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 E 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 F 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 F 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 F 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 F 77 PHE ASP ASN PHE THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 F 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 F 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 J 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 J 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 J 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 J 77 PHE ASP ASN PHE THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 J 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 J 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 G 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 G 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 G 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 G 77 PHE ASP ASN PHE THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 G 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 G 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 H 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 H 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 H 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 H 77 PHE ASP ASN PHE THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 H 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 H 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 I 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 I 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 I 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 I 77 PHE ASP ASN PHE THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 I 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 I 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 K 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 K 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 K 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 K 77 PHE ASP ASN PHE THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 K 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 K 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 L 77 MET LYS GLN GLY GLY GLN GLY LEU GLN ASP TYR TYR LEU SEQRES 2 L 77 ASN GLN LEU ARG LYS GLU LYS ILE LEU ALA THR VAL PHE SEQRES 3 L 77 LEU THR ASN GLY PHE GLN LEU ARG GLY ARG VAL VAL SER SEQRES 4 L 77 PHE ASP ASN PHE THR VAL LEU LEU ASP VAL GLU GLY LYS SEQRES 5 L 77 GLN GLN LEU VAL PHE LYS HIS ALA ILE SER THR PHE SER SEQRES 6 L 77 PRO GLN LYS ASN VAL ALA LEU ASN PRO ASP ALA GLU SEQRES 1 R 6 U U U U U U SEQRES 1 Z 6 U U U U U U FORMUL 15 HOH *2(H2 O) HELIX 1 1 GLN D 6 GLU D 19 1 14 HELIX 2 2 GLN A 6 GLU A 19 1 14 HELIX 3 3 GLN B 6 GLU B 19 1 14 HELIX 4 4 GLY C 7 GLU C 19 1 13 HELIX 5 5 GLN E 6 GLU E 19 1 14 HELIX 6 6 GLN F 6 GLU F 19 1 14 HELIX 7 7 GLN J 6 GLU J 19 1 14 HELIX 8 8 GLN G 6 GLU G 19 1 14 HELIX 9 9 GLN H 6 GLU H 19 1 14 HELIX 10 10 GLY I 7 GLU I 19 1 13 HELIX 11 11 GLN K 6 GLU K 19 1 14 HELIX 12 12 GLN L 6 GLU L 19 1 14 SHEET 1 A31 LEU D 22 LEU D 27 0 SHEET 2 A31 GLN D 32 PHE D 40 -1 O LEU D 33 N VAL D 25 SHEET 3 A31 THR D 44 VAL D 49 -1 O ASP D 48 N ARG D 36 SHEET 4 A31 LYS D 52 PHE D 57 -1 O LYS D 52 N VAL D 49 SHEET 5 A31 ILE H 61 PRO H 66 -1 O PHE H 64 N LEU D 55 SHEET 6 A31 ALA H 23 LEU H 27 -1 N PHE H 26 O SER H 62 SHEET 7 A31 GLN H 32 PHE H 40 -1 O LEU H 33 N VAL H 25 SHEET 8 A31 THR H 44 VAL H 49 -1 O LEU H 46 N SER H 39 SHEET 9 A31 LYS H 52 PHE H 57 -1 O LYS H 52 N VAL H 49 SHEET 10 A31 ILE G 61 PRO G 66 -1 N PHE G 64 O LEU H 55 SHEET 11 A31 ALA G 23 LEU G 27 -1 N THR G 24 O SER G 65 SHEET 12 A31 GLN G 32 PHE G 40 -1 O LEU G 33 N VAL G 25 SHEET 13 A31 THR G 44 VAL G 49 -1 O ASP G 48 N ARG G 36 SHEET 14 A31 LYS G 52 PHE G 57 -1 O LYS G 52 N VAL G 49 SHEET 15 A31 ILE J 61 PRO J 66 -1 N PHE J 64 O LEU G 55 SHEET 16 A31 LEU J 22 LEU J 27 -1 N THR J 24 O SER J 65 SHEET 17 A31 GLN J 32 PHE J 40 -1 O LEU J 33 N VAL J 25 SHEET 18 A31 THR J 44 VAL J 49 -1 O ASP J 48 N ARG J 36 SHEET 19 A31 LYS J 52 PHE J 57 -1 O LYS J 52 N VAL J 49 SHEET 20 A31 ILE B 61 PRO B 66 -1 N PHE B 64 O LEU J 55 SHEET 21 A31 LEU B 22 LEU B 27 -1 N PHE B 26 O SER B 62 SHEET 22 A31 GLN B 32 PHE B 40 -1 O LEU B 33 N VAL B 25 SHEET 23 A31 THR B 44 VAL B 49 -1 O LEU B 46 N SER B 39 SHEET 24 A31 LYS B 52 PHE B 57 -1 O GLN B 54 N LEU B 47 SHEET 25 A31 ILE A 61 PRO A 66 -1 N PHE A 64 O LEU B 55 SHEET 26 A31 ALA A 23 LEU A 27 -1 N THR A 24 O SER A 65 SHEET 27 A31 GLN A 32 PHE A 40 -1 O LEU A 33 N VAL A 25 SHEET 28 A31 THR A 44 VAL A 49 -1 O LEU A 46 N SER A 39 SHEET 29 A31 LYS A 52 PHE A 57 -1 O GLN A 54 N LEU A 47 SHEET 30 A31 ILE D 61 PRO D 66 -1 N PHE D 64 O LEU A 55 SHEET 31 A31 LEU D 22 LEU D 27 -1 N THR D 24 O SER D 65 SHEET 1 B31 LEU C 22 LEU C 27 0 SHEET 2 B31 GLN C 32 PHE C 40 -1 O LEU C 33 N VAL C 25 SHEET 3 B31 THR C 44 VAL C 49 -1 O LEU C 46 N SER C 39 SHEET 4 B31 LYS C 52 PHE C 57 -1 O VAL C 56 N VAL C 45 SHEET 5 B31 ILE F 61 PRO F 66 -1 O PHE F 64 N LEU C 55 SHEET 6 B31 LEU F 22 LEU F 27 -1 N THR F 24 O SER F 65 SHEET 7 B31 GLN F 32 PHE F 40 -1 O LEU F 33 N VAL F 25 SHEET 8 B31 THR F 44 VAL F 49 -1 O LEU F 46 N SER F 39 SHEET 9 B31 LYS F 52 PHE F 57 -1 O GLN F 54 N LEU F 47 SHEET 10 B31 ILE E 61 PRO E 66 -1 N PHE E 64 O LEU F 55 SHEET 11 B31 ALA E 23 LEU E 27 -1 N THR E 24 O SER E 65 SHEET 12 B31 GLN E 32 PHE E 40 -1 O LEU E 33 N VAL E 25 SHEET 13 B31 THR E 44 VAL E 49 -1 O LEU E 46 N SER E 39 SHEET 14 B31 LYS E 52 PHE E 57 -1 O GLN E 54 N LEU E 47 SHEET 15 B31 ILE I 61 PRO I 66 -1 O PHE I 64 N LEU E 55 SHEET 16 B31 ALA I 23 LEU I 27 -1 N THR I 24 O SER I 65 SHEET 17 B31 GLN I 32 PHE I 40 -1 O LEU I 33 N VAL I 25 SHEET 18 B31 THR I 44 VAL I 49 -1 O ASP I 48 N ARG I 36 SHEET 19 B31 LYS I 52 PHE I 57 -1 O LYS I 52 N VAL I 49 SHEET 20 B31 ILE L 61 PRO L 66 -1 O PHE L 64 N LEU I 55 SHEET 21 B31 LEU L 22 LEU L 27 -1 N THR L 24 O SER L 65 SHEET 22 B31 GLN L 32 PHE L 40 -1 O LEU L 33 N VAL L 25 SHEET 23 B31 THR L 44 VAL L 49 -1 O ASP L 48 N ARG L 36 SHEET 24 B31 LYS L 52 PHE L 57 -1 O VAL L 56 N VAL L 45 SHEET 25 B31 ILE K 61 PRO K 66 -1 N PHE K 64 O LEU L 55 SHEET 26 B31 LEU K 22 LEU K 27 -1 N THR K 24 O SER K 65 SHEET 27 B31 GLN K 32 PHE K 40 -1 O LEU K 33 N VAL K 25 SHEET 28 B31 THR K 44 VAL K 49 -1 O LEU K 46 N SER K 39 SHEET 29 B31 LYS K 52 PHE K 57 -1 O GLN K 54 N LEU K 47 SHEET 30 B31 ILE C 61 PRO C 66 -1 N PHE C 64 O LEU K 55 SHEET 31 B31 LEU C 22 LEU C 27 -1 N THR C 24 O SER C 65 CISPEP 1 GLN E 3 GLY E 4 0 1.52 CISPEP 2 GLY I 5 GLN I 6 0 -23.83 CISPEP 3 GLN K 3 GLY K 4 0 0.62 CRYST1 124.028 123.934 67.595 90.00 90.06 90.00 C 1 2 1 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008063 0.000000 0.000008 0.00000 SCALE2 0.000000 0.008069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014794 0.00000