HEADER SPLICING 13-NOV-13 4NL7 OBSLTE 12-OCT-16 4NL7 NONE TITLE STRUCTURE OF THE TRUNCATED FORM OF THE PROTEIN SMN FOUND IN SMA TITLE 2 PATIENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURVIVAL MOTOR NEURON PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 SYNONYM: SMN, COMPONENT OF GEMS 1, GEMIN-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMN1, SMN, SMNT, SMN2, SMNC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA PROTEIN, RNA METABOLISM, SPLICEOSOMES, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR J.P.ALLEN,C.SENG REVDAT 4 12-OCT-16 4NL7 1 OBSLTE REVDAT 3 08-APR-15 4NL7 1 JRNL REVDAT 2 01-APR-15 4NL7 1 ATOM CAVEAT REMARK SEQADV REVDAT 2 2 1 SEQRES REVDAT 1 21-JAN-15 4NL7 0 JRNL AUTH C.O.SENG,C.MAGEE,P.J.YOUNG,C.L.LORSON,J.P.ALLEN JRNL TITL THE SMN STRUCTURE REVEALS ITS CRUCIAL ROLE IN SNRNP JRNL TITL 2 ASSEMBLY. JRNL REF HUM.MOL.GENET. V. 24 2138 2015 JRNL REFN ISSN 0964-6906 JRNL PMID 25561692 JRNL DOI 10.1093/HMG/DDU734 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : LS_WUNIT_K1 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 6702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.295 REMARK 3 R VALUE (WORKING SET) : 0.295 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 100.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 13.9961 - 8.5731 0.86 228 228 0.3060 0.3060 REMARK 3 2 8.5731 - 7.0871 0.89 227 227 0.3486 0.3486 REMARK 3 3 7.0871 - 6.2831 0.91 226 226 0.3310 0.3310 REMARK 3 4 6.2831 - 5.7523 0.87 227 227 0.3356 0.3356 REMARK 3 5 5.7523 - 5.3649 0.89 228 228 0.3352 0.3352 REMARK 3 6 5.3649 - 5.0645 0.86 220 220 0.3357 0.3357 REMARK 3 7 5.0645 - 4.8217 0.90 219 219 0.3120 0.3120 REMARK 3 8 4.8217 - 4.6197 0.91 243 243 0.2939 0.2939 REMARK 3 9 4.6197 - 4.4478 0.94 217 217 0.2578 0.2578 REMARK 3 10 4.4478 - 4.2989 0.91 240 240 0.2849 0.2849 REMARK 3 11 4.2989 - 4.1681 0.91 224 224 0.2760 0.2760 REMARK 3 12 4.1681 - 4.0519 0.92 228 228 0.2984 0.2984 REMARK 3 13 4.0519 - 3.9477 0.90 238 238 0.3127 0.3127 REMARK 3 14 3.9477 - 3.8534 0.90 214 214 0.2843 0.2843 REMARK 3 15 3.8534 - 3.7676 0.91 245 245 0.2750 0.2750 REMARK 3 16 3.7676 - 3.6889 0.88 207 207 0.2552 0.2552 REMARK 3 17 3.6889 - 3.6164 0.92 234 234 0.2557 0.2557 REMARK 3 18 3.6164 - 3.5493 0.90 227 227 0.2964 0.2964 REMARK 3 19 3.5493 - 3.4869 0.88 211 211 0.2891 0.2891 REMARK 3 20 3.4869 - 3.4286 0.90 222 222 0.2980 0.2980 REMARK 3 21 3.4286 - 3.3741 0.92 229 229 0.3405 0.3405 REMARK 3 22 3.3741 - 3.3229 0.88 228 228 0.2882 0.2882 REMARK 3 23 3.3229 - 3.2747 0.83 202 202 0.2889 0.2889 REMARK 3 24 3.2747 - 3.2291 0.89 218 218 0.2881 0.2881 REMARK 3 25 3.2291 - 3.1860 0.90 233 233 0.2756 0.2756 REMARK 3 26 3.1860 - 3.1451 0.87 202 202 0.2429 0.2429 REMARK 3 27 3.1451 - 3.1062 0.85 208 208 0.2828 0.2828 REMARK 3 28 3.1062 - 3.0692 0.88 233 233 0.2714 0.2714 REMARK 3 29 3.0692 - 3.0339 0.89 227 227 0.2858 0.2858 REMARK 3 30 3.0339 - 3.0001 0.85 197 197 0.3589 0.3589 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2109 REMARK 3 ANGLE : 1.929 2884 REMARK 3 CHIRALITY : 0.071 303 REMARK 3 PLANARITY : 0.016 389 REMARK 3 DIHEDRAL : 20.335 806 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 THIS ENTRY IS FROM THE WRONG SAMPLE AND WAS WITHDRAWN AT THE REMARK 5 REQUEST OF THE AUTHOR. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-13. REMARK 100 THE RCSB ID CODE IS RCSB083342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6989 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 56.845 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.090 REMARK 200 R MERGE (I) : 0.35200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 PROTEIN TO 40% PEG4000, 0.1 M TRIS REMARK 280 -HCL, PH 9.0, 0.3 MM SODIUM CHLORIDE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.55050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.14600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.55050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.14600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 43 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 56 CG OD1 ND2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 TYR A 127 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 157 CG CD OE1 NE2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 VAL A 165 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 147 OG SER A 173 1.41 REMARK 500 O TRP A 267 OG SER A 270 1.49 REMARK 500 OG SER A 180 O HOH A 311 1.52 REMARK 500 O ASP A 252 O HOH A 318 1.80 REMARK 500 O LEU A 141 O HOH A 320 1.86 REMARK 500 SG CYS A 98 O HOH A 320 1.90 REMARK 500 O TRP A 34 CB GLU A 61 1.90 REMARK 500 NZ LYS A 184 O SER A 187 1.91 REMARK 500 O SER A 115 O HOH A 312 1.94 REMARK 500 O ASN A 150 O HOH A 319 1.98 REMARK 500 O ALA A 156 O HOH A 314 1.99 REMARK 500 O THR A 112 O HOH A 313 2.05 REMARK 500 NZ LYS A 213 O HOH A 317 2.05 REMARK 500 O ALA A 114 O HOH A 315 2.16 REMARK 500 OD1 ASN A 155 OG SER A 166 2.17 REMARK 500 O ASN A 155 O HOH A 308 2.18 REMARK 500 OD1 ASP A 32 NE1 TRP A 34 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 179 OD1 ASP A 256 2655 1.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 196 CD PRO A 196 N -0.096 REMARK 500 PRO A 198 CD PRO A 198 N -0.131 REMARK 500 PRO A 207 CD PRO A 207 N -0.176 REMARK 500 PRO A 220 CD PRO A 220 N -0.089 REMARK 500 PRO A 245 CD PRO A 245 N 0.145 REMARK 500 PRO A 247 CD PRO A 247 N -0.190 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 87 N - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 SER A 187 CB - CA - C ANGL. DEV. = 20.1 DEGREES REMARK 500 ALA A 188 N - CA - CB ANGL. DEV. = 17.2 DEGREES REMARK 500 PRO A 189 C - N - CD ANGL. DEV. = -17.6 DEGREES REMARK 500 PHE A 193 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 PHE A 193 N - CA - C ANGL. DEV. = 22.7 DEGREES REMARK 500 PRO A 195 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 PRO A 196 N - CA - CB ANGL. DEV. = -9.0 DEGREES REMARK 500 PRO A 197 C - N - CD ANGL. DEV. = -25.2 DEGREES REMARK 500 PRO A 198 N - CA - CB ANGL. DEV. = -10.4 DEGREES REMARK 500 PRO A 198 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 PRO A 203 C - N - CD ANGL. DEV. = -26.7 DEGREES REMARK 500 LEU A 205 CB - CA - C ANGL. DEV. = 19.7 DEGREES REMARK 500 LEU A 205 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 GLY A 206 N - CA - C ANGL. DEV. = -21.2 DEGREES REMARK 500 PRO A 207 CA - N - CD ANGL. DEV. = 10.7 DEGREES REMARK 500 PRO A 207 N - CA - CB ANGL. DEV. = -8.8 DEGREES REMARK 500 PRO A 207 C - N - CD ANGL. DEV. = -17.0 DEGREES REMARK 500 PRO A 219 N - CA - C ANGL. DEV. = 16.1 DEGREES REMARK 500 PRO A 225 C - N - CD ANGL. DEV. = -22.4 DEGREES REMARK 500 SER A 230 CB - CA - C ANGL. DEV. = -11.6 DEGREES REMARK 500 SER A 230 N - CA - C ANGL. DEV. = 28.1 DEGREES REMARK 500 CYS A 231 N - CA - CB ANGL. DEV. = -12.5 DEGREES REMARK 500 CYS A 231 N - CA - C ANGL. DEV. = 20.5 DEGREES REMARK 500 PRO A 235 C - N - CD ANGL. DEV. = -21.1 DEGREES REMARK 500 PRO A 237 C - N - CD ANGL. DEV. = -33.0 DEGREES REMARK 500 PRO A 240 C - N - CD ANGL. DEV. = -25.9 DEGREES REMARK 500 ILE A 243 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ILE A 243 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 PRO A 244 CB - CA - C ANGL. DEV. = -19.0 DEGREES REMARK 500 PRO A 244 N - CA - C ANGL. DEV. = 23.8 DEGREES REMARK 500 PRO A 245 N - CA - CB ANGL. DEV. = 7.2 DEGREES REMARK 500 PRO A 246 N - CA - C ANGL. DEV. = 24.7 DEGREES REMARK 500 PRO A 247 CA - N - CD ANGL. DEV. = 11.7 DEGREES REMARK 500 PRO A 247 N - CA - CB ANGL. DEV. = -10.6 DEGREES REMARK 500 PRO A 247 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO A 248 C - N - CD ANGL. DEV. = -17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 13 -168.46 -75.45 REMARK 500 ALA A 87 -83.82 -104.10 REMARK 500 SER A 88 -0.39 -141.68 REMARK 500 TYR A 130 -52.88 -121.38 REMARK 500 LEU A 141 -164.67 -124.99 REMARK 500 ASN A 161 -80.70 -114.77 REMARK 500 TRP A 190 -72.55 -113.82 REMARK 500 ILE A 243 66.35 -104.30 REMARK 500 LEU A 260 -55.16 -123.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 198 PRO A 199 -33.92 REMARK 500 PRO A 244 PRO A 245 -51.03 REMARK 500 SER A 253 LEU A 254 138.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 12 24.5 L L OUTSIDE RANGE REMARK 500 ASP A 36 24.8 L L OUTSIDE RANGE REMARK 500 ASN A 84 22.3 L L OUTSIDE RANGE REMARK 500 ALA A 87 23.7 L L OUTSIDE RANGE REMARK 500 SER A 230 20.6 L L OUTSIDE RANGE REMARK 500 ILE A 243 24.5 L L OUTSIDE RANGE REMARK 500 PRO A 244 24.5 L L OUTSIDE RANGE REMARK 500 TYR A 268 23.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NL6 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN CONSTRUCT COMPRISES RESIDUES 11-282 OF ISOFORM SMN-DELTA7 REMARK 999 (UNP Q16637-3). DBREF 4NL7 A 11 282 UNP Q16637 SMN_HUMAN 11 282 SEQADV 4NL7 GLU A 159 UNP Q16637 ASN 159 CONFLICT SEQRES 1 A 272 GLY VAL PRO GLU GLN GLU ASP SER VAL LEU PHE ARG ARG SEQRES 2 A 272 GLY THR GLY GLN SER ASP ASP SER ASP ILE TRP ASP ASP SEQRES 3 A 272 THR ALA LEU ILE LYS ALA TYR ASP LYS ALA VAL ALA SER SEQRES 4 A 272 PHE LYS HIS ALA LEU LYS ASN GLY ASP ILE CYS GLU THR SEQRES 5 A 272 SER GLY LYS PRO LYS THR THR PRO LYS ARG LYS PRO ALA SEQRES 6 A 272 LYS LYS ASN LYS SER GLN LYS LYS ASN THR ALA ALA SER SEQRES 7 A 272 LEU GLN GLN TRP LYS VAL GLY ASP LYS CYS SER ALA ILE SEQRES 8 A 272 TRP SER GLU ASP GLY CYS ILE TYR PRO ALA THR ILE ALA SEQRES 9 A 272 SER ILE ASP PHE LYS ARG GLU THR CYS VAL VAL VAL TYR SEQRES 10 A 272 THR GLY TYR GLY ASN ARG GLU GLU GLN ASN LEU SER ASP SEQRES 11 A 272 LEU LEU SER PRO ILE CYS GLU VAL ALA ASN ASN ILE GLU SEQRES 12 A 272 GLN ASN ALA GLN GLU GLU GLU ASN GLU SER GLN VAL SER SEQRES 13 A 272 THR ASP GLU SER GLU ASN SER ARG SER PRO GLY ASN LYS SEQRES 14 A 272 SER ASP ASN ILE LYS PRO LYS SER ALA PRO TRP ASN SER SEQRES 15 A 272 PHE LEU PRO PRO PRO PRO PRO MET PRO GLY PRO ARG LEU SEQRES 16 A 272 GLY PRO GLY LYS PRO GLY LEU LYS PHE ASN GLY PRO PRO SEQRES 17 A 272 PRO PRO PRO PRO PRO PRO PRO PRO HIS LEU LEU SER CYS SEQRES 18 A 272 TRP LEU PRO PRO PHE PRO SER GLY PRO PRO ILE ILE PRO SEQRES 19 A 272 PRO PRO PRO PRO ILE CYS PRO ASP SER LEU ASP ASP ALA SEQRES 20 A 272 ASP ALA LEU GLY SER MET LEU ILE SER TRP TYR MET SER SEQRES 21 A 272 GLY TYR HIS THR GLY TYR TYR MET GLU MET LEU ALA FORMUL 2 HOH *20(H2 O) HELIX 1 1 MET A 263 MET A 280 1 18 SHEET 1 A 2 CYS A 98 ILE A 101 0 SHEET 2 A 2 ILE A 108 ALA A 111 -1 O ALA A 111 N CYS A 98 CISPEP 1 GLN A 157 GLU A 158 0 -18.52 CISPEP 2 SER A 175 PRO A 176 0 5.47 CISPEP 3 SER A 187 ALA A 188 0 8.20 CISPEP 4 GLY A 208 LYS A 209 0 -3.34 CRYST1 107.101 62.292 57.069 90.00 95.07 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009337 0.000000 0.000828 0.00000 SCALE2 0.000000 0.016053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017591 0.00000