HEADER LYASE 14-NOV-13 4NLE TITLE CRYSTAL STRUCTURE OF APO ADENYLOSUCCINATE LYASE FROM MYCOBACTERIUM TITLE 2 SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLOSUCCINATE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.3.2.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: MC2 155; SOURCE 5 GENE: MSMEG_5847, PURB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSET C KEYWDS PURINE BIOSYNTHESIS, PURINE SALVAGE PATHWAY, HOMOTETRAMER, CATALYSIS, KEYWDS 2 ASPARTASE/FUMARASE SUPERFAMILY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BANERJEE,M.R.N.MURTHY REVDAT 3 08-NOV-23 4NLE 1 REMARK REVDAT 2 24-AUG-22 4NLE 1 JRNL SEQADV REVDAT 1 05-MAR-14 4NLE 0 JRNL AUTH S.BANERJEE,M.J.AGRAWAL,D.MISHRA,S.SHARAN,H.BALARAM, JRNL AUTH 2 H.S.SAVITHRI,M.R.MURTHY JRNL TITL STRUCTURAL AND KINETIC STUDIES ON ADENYLOSUCCINATE LYASE JRNL TITL 2 FROM MYCOBACTERIUM SMEGMATIS AND MYCOBACTERIUM TUBERCULOSIS JRNL TITL 3 PROVIDE NEW INSIGHTS ON THE CATALYTIC RESIDUES OF THE JRNL TITL 4 ENZYME. JRNL REF FEBS J. V. 281 1642 2014 JRNL REFN ISSN 1742-464X JRNL PMID 24479855 JRNL DOI 10.1111/FEBS.12730 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 49552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2661 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3402 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 502 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.279 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.925 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7081 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6808 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9609 ; 0.759 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15535 ; 0.686 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 920 ; 4.349 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 325 ;32.468 ;23.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1145 ;12.596 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 69 ;12.396 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1112 ; 0.039 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8186 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1620 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3683 ; 0.492 ; 2.549 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3682 ; 0.492 ; 2.549 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4602 ; 0.922 ; 3.815 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4603 ; 0.921 ; 3.815 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3398 ; 0.294 ; 2.536 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3399 ; 0.294 ; 2.536 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5008 ; 0.576 ; 3.795 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8747 ; 3.433 ;20.115 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8500 ; 3.226 ;19.867 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 471 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0802 -8.4449 27.2027 REMARK 3 T TENSOR REMARK 3 T11: 0.0187 T22: 0.0736 REMARK 3 T33: 0.0476 T12: 0.0027 REMARK 3 T13: -0.0172 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.0485 L22: 0.9091 REMARK 3 L33: 0.1745 L12: -0.0519 REMARK 3 L13: -0.0272 L23: 0.1888 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.0027 S13: -0.0100 REMARK 3 S21: 0.1116 S22: -0.0563 S23: -0.0562 REMARK 3 S31: 0.0168 S32: 0.0464 S33: 0.0538 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 471 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9196 10.3756 10.0187 REMARK 3 T TENSOR REMARK 3 T11: 0.0338 T22: 0.0753 REMARK 3 T33: 0.0526 T12: 0.0018 REMARK 3 T13: 0.0296 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.0871 L22: 0.8365 REMARK 3 L33: 0.1577 L12: -0.0944 REMARK 3 L13: -0.0007 L23: 0.1931 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: 0.0228 S13: 0.0374 REMARK 3 S21: -0.1320 S22: -0.0805 S23: -0.0607 REMARK 3 S31: -0.0139 S32: 0.0351 S33: 0.0512 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4NLE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49552 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 37.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.850 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 14.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VD6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA HEPES PH 7.5, 1.4M SODIUM REMARK 280 CITRATE, 0.1M BETAINE HYDROCHLORIDE, UNDER OIL, MICROBATCH REMARK 280 METHOD, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.30000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 88.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 88.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 723 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 645 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ARG A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 VAL A 3 REMARK 465 THR A 76 REMARK 465 LEU A 90 REMARK 465 ALA A 91 REMARK 465 GLY A 92 REMARK 465 ALA A 472 REMARK 465 ILE A 473 REMARK 465 LEU A 474 REMARK 465 MET B -13 REMARK 465 ARG B -12 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 GLY B -3 REMARK 465 MET B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 VAL B 3 REMARK 465 VAL B 49 REMARK 465 LEU B 90 REMARK 465 ALA B 91 REMARK 465 GLY B 92 REMARK 465 PHE B 272 REMARK 465 ALA B 273 REMARK 465 PRO B 274 REMARK 465 GLY B 275 REMARK 465 GLN B 276 REMARK 465 VAL B 277 REMARK 465 GLY B 278 REMARK 465 SER B 279 REMARK 465 SER B 280 REMARK 465 ALA B 281 REMARK 465 MET B 282 REMARK 465 PRO B 283 REMARK 465 HIS B 284 REMARK 465 ALA B 472 REMARK 465 ILE B 473 REMARK 465 LEU B 474 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 25 CD OE1 OE2 REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 75 CG1 CG2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 81 CE NZ REMARK 470 ARG A 214 CD NE CZ NH1 NH2 REMARK 470 PHE A 272 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO A 274 CG CD REMARK 470 GLN A 276 CG CD OE1 NE2 REMARK 470 VAL A 277 CG1 CG2 REMARK 470 SER A 279 OG REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 ARG B 59 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 66 CG CD1 CD2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 75 CG1 CG2 REMARK 470 ARG B 77 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 ARG B 83 NE CZ NH1 NH2 REMARK 470 ILE B 84 CG1 CG2 CD1 REMARK 470 PHE B 87 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 97 CB REMARK 470 LYS B 98 CD CE NZ REMARK 470 ARG B 293 CZ NH1 NH2 REMARK 470 ARG B 361 NE CZ NH1 NH2 REMARK 470 MET B 377 CG SD CE REMARK 470 LYS B 394 CE NZ REMARK 470 ARG B 409 NE CZ NH1 NH2 REMARK 470 LYS B 437 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 48 125.92 -38.94 REMARK 500 ILE A 84 26.55 -75.80 REMARK 500 ASN A 88 98.19 -65.53 REMARK 500 ALA A 153 -138.98 -148.16 REMARK 500 TYR A 183 109.09 -58.34 REMARK 500 GLN A 276 80.22 82.49 REMARK 500 SER A 279 173.52 69.87 REMARK 500 SER A 280 -57.22 -136.60 REMARK 500 MET A 282 76.93 -119.60 REMARK 500 ASN A 317 -135.16 54.62 REMARK 500 ASP A 320 -160.11 -167.27 REMARK 500 ASP A 412 52.46 -141.69 REMARK 500 ASP B 51 -130.43 34.87 REMARK 500 ILE B 84 2.19 -61.64 REMARK 500 ALA B 153 -146.03 -137.50 REMARK 500 PHE B 202 30.77 -98.05 REMARK 500 ASN B 317 -130.73 56.26 REMARK 500 ASP B 320 -160.17 -171.23 REMARK 500 REMARK 500 REMARK: NULL DBREF 4NLE A 1 474 UNP A0R4I6 A0R4I6_MYCS2 1 474 DBREF 4NLE B 1 474 UNP A0R4I6 A0R4I6_MYCS2 1 474 SEQADV 4NLE MET A -13 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE ARG A -12 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE GLY A -11 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE SER A -10 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE HIS A -9 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE HIS A -8 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE HIS A -7 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE HIS A -6 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE HIS A -5 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE HIS A -4 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE GLY A -3 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE MET A -2 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE ALA A -1 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE SER A 0 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE MET B -13 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE ARG B -12 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE GLY B -11 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE SER B -10 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE HIS B -9 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE HIS B -8 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE HIS B -7 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE HIS B -6 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE HIS B -5 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE HIS B -4 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE GLY B -3 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE MET B -2 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE ALA B -1 UNP A0R4I6 EXPRESSION TAG SEQADV 4NLE SER B 0 UNP A0R4I6 EXPRESSION TAG SEQRES 1 A 488 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 488 SER MET PHE VAL THR ILE PRO ASN VAL LEU ALA ASN ARG SEQRES 3 A 488 TYR ALA SER ASP GLU MET VAL ALA ILE TRP SER PRO GLU SEQRES 4 A 488 ALA LYS ILE ILE ALA GLU ARG ARG LEU TRP LEU ALA VAL SEQRES 5 A 488 LEU ARG ALA GLN ALA GLU LEU GLY VAL ALA VAL PRO ASP SEQRES 6 A 488 GLY VAL VAL GLU ASP TYR GLU ARG VAL LEU GLU ASN VAL SEQRES 7 A 488 ASP LEU GLU SER ILE ALA ALA ARG GLU ARG VAL THR ARG SEQRES 8 A 488 HIS ASP VAL LYS ALA ARG ILE GLU GLU PHE ASN ALA LEU SEQRES 9 A 488 ALA GLY HIS GLU HIS VAL HIS LYS GLY MET THR SER ARG SEQRES 10 A 488 ASP LEU THR GLU ASN VAL GLU GLN LEU GLN ILE ARG GLN SEQRES 11 A 488 SER LEU GLU LEU VAL PHE SER HIS GLY VAL ALA VAL VAL SEQRES 12 A 488 ALA ARG LEU ALA GLU ARG ALA VAL VAL TYR ARG ASP LEU SEQRES 13 A 488 VAL MET ALA GLY ARG SER HIS ASN VAL ALA ALA GLN ALA SEQRES 14 A 488 THR THR LEU GLY LYS ARG PHE ALA SER ALA ALA GLU GLU SEQRES 15 A 488 THR LEU VAL ALA LEU THR ARG LEU ARG GLU LEU ILE ASP SEQRES 16 A 488 ARG TYR PRO LEU ARG GLY VAL LYS GLY PRO MET GLY THR SEQRES 17 A 488 ALA GLN ASP MET LEU ASP LEU PHE GLY GLY ASP VAL GLY SEQRES 18 A 488 LYS LEU ALA ASP LEU GLU ARG ARG VAL ALA GLU PHE LEU SEQRES 19 A 488 GLY PHE THR GLU VAL PHE THR SER VAL GLY GLN VAL TYR SEQRES 20 A 488 PRO ARG SER LEU ASP HIS ASP VAL LEU SER ALA LEU VAL SEQRES 21 A 488 GLN PHE GLY ALA GLY PRO SER SER MET ALA HIS THR ILE SEQRES 22 A 488 ARG LEU MET ALA GLY HIS GLU LEU VAL THR GLU GLY PHE SEQRES 23 A 488 ALA PRO GLY GLN VAL GLY SER SER ALA MET PRO HIS LYS SEQRES 24 A 488 MET ASN THR ARG SER CYS GLU ARG VAL ASN GLY LEU GLN SEQRES 25 A 488 VAL VAL LEU ARG GLY TYR ALA SER MET ALA ALA GLU LEU SEQRES 26 A 488 ALA GLY ALA GLN TRP ASN GLU GLY ASP VAL PHE CYS SER SEQRES 27 A 488 VAL VAL ARG ARG VAL ALA LEU PRO ASP ALA PHE PHE ALA SEQRES 28 A 488 ILE ASP GLY GLN THR GLU THR PHE LEU THR VAL LEU ASP SEQRES 29 A 488 GLU PHE GLY ALA TYR PRO ALA VAL ILE GLN ARG GLU LEU SEQRES 30 A 488 ASP ARG TYR LEU PRO PHE LEU ALA THR THR ARG ILE LEU SEQRES 31 A 488 MET ALA ALA VAL ARG ALA GLY VAL GLY ARG GLU ALA ALA SEQRES 32 A 488 HIS GLU VAL ILE LYS GLU HIS ALA VAL ALA VAL ALA LEU SEQRES 33 A 488 ALA MET ARG GLU GLN GLY ARG GLU PRO ASP LEU ILE ASP SEQRES 34 A 488 ARG LEU ALA GLY ASP PRO ARG LEU PRO LEU ASP LYS VAL SEQRES 35 A 488 ALA LEU GLU ALA ALA LEU GLU ASP LYS GLN ALA PHE THR SEQRES 36 A 488 GLY ALA ALA GLY ASP GLN VAL ASP GLY VAL VAL ALA ALA SEQRES 37 A 488 VAL GLY GLU LEU VAL SER ARG TYR PRO GLU ALA ALA LYS SEQRES 38 A 488 TYR THR SER GLY ALA ILE LEU SEQRES 1 B 488 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 B 488 SER MET PHE VAL THR ILE PRO ASN VAL LEU ALA ASN ARG SEQRES 3 B 488 TYR ALA SER ASP GLU MET VAL ALA ILE TRP SER PRO GLU SEQRES 4 B 488 ALA LYS ILE ILE ALA GLU ARG ARG LEU TRP LEU ALA VAL SEQRES 5 B 488 LEU ARG ALA GLN ALA GLU LEU GLY VAL ALA VAL PRO ASP SEQRES 6 B 488 GLY VAL VAL GLU ASP TYR GLU ARG VAL LEU GLU ASN VAL SEQRES 7 B 488 ASP LEU GLU SER ILE ALA ALA ARG GLU ARG VAL THR ARG SEQRES 8 B 488 HIS ASP VAL LYS ALA ARG ILE GLU GLU PHE ASN ALA LEU SEQRES 9 B 488 ALA GLY HIS GLU HIS VAL HIS LYS GLY MET THR SER ARG SEQRES 10 B 488 ASP LEU THR GLU ASN VAL GLU GLN LEU GLN ILE ARG GLN SEQRES 11 B 488 SER LEU GLU LEU VAL PHE SER HIS GLY VAL ALA VAL VAL SEQRES 12 B 488 ALA ARG LEU ALA GLU ARG ALA VAL VAL TYR ARG ASP LEU SEQRES 13 B 488 VAL MET ALA GLY ARG SER HIS ASN VAL ALA ALA GLN ALA SEQRES 14 B 488 THR THR LEU GLY LYS ARG PHE ALA SER ALA ALA GLU GLU SEQRES 15 B 488 THR LEU VAL ALA LEU THR ARG LEU ARG GLU LEU ILE ASP SEQRES 16 B 488 ARG TYR PRO LEU ARG GLY VAL LYS GLY PRO MET GLY THR SEQRES 17 B 488 ALA GLN ASP MET LEU ASP LEU PHE GLY GLY ASP VAL GLY SEQRES 18 B 488 LYS LEU ALA ASP LEU GLU ARG ARG VAL ALA GLU PHE LEU SEQRES 19 B 488 GLY PHE THR GLU VAL PHE THR SER VAL GLY GLN VAL TYR SEQRES 20 B 488 PRO ARG SER LEU ASP HIS ASP VAL LEU SER ALA LEU VAL SEQRES 21 B 488 GLN PHE GLY ALA GLY PRO SER SER MET ALA HIS THR ILE SEQRES 22 B 488 ARG LEU MET ALA GLY HIS GLU LEU VAL THR GLU GLY PHE SEQRES 23 B 488 ALA PRO GLY GLN VAL GLY SER SER ALA MET PRO HIS LYS SEQRES 24 B 488 MET ASN THR ARG SER CYS GLU ARG VAL ASN GLY LEU GLN SEQRES 25 B 488 VAL VAL LEU ARG GLY TYR ALA SER MET ALA ALA GLU LEU SEQRES 26 B 488 ALA GLY ALA GLN TRP ASN GLU GLY ASP VAL PHE CYS SER SEQRES 27 B 488 VAL VAL ARG ARG VAL ALA LEU PRO ASP ALA PHE PHE ALA SEQRES 28 B 488 ILE ASP GLY GLN THR GLU THR PHE LEU THR VAL LEU ASP SEQRES 29 B 488 GLU PHE GLY ALA TYR PRO ALA VAL ILE GLN ARG GLU LEU SEQRES 30 B 488 ASP ARG TYR LEU PRO PHE LEU ALA THR THR ARG ILE LEU SEQRES 31 B 488 MET ALA ALA VAL ARG ALA GLY VAL GLY ARG GLU ALA ALA SEQRES 32 B 488 HIS GLU VAL ILE LYS GLU HIS ALA VAL ALA VAL ALA LEU SEQRES 33 B 488 ALA MET ARG GLU GLN GLY ARG GLU PRO ASP LEU ILE ASP SEQRES 34 B 488 ARG LEU ALA GLY ASP PRO ARG LEU PRO LEU ASP LYS VAL SEQRES 35 B 488 ALA LEU GLU ALA ALA LEU GLU ASP LYS GLN ALA PHE THR SEQRES 36 B 488 GLY ALA ALA GLY ASP GLN VAL ASP GLY VAL VAL ALA ALA SEQRES 37 B 488 VAL GLY GLU LEU VAL SER ARG TYR PRO GLU ALA ALA LYS SEQRES 38 B 488 TYR THR SER GLY ALA ILE LEU FORMUL 3 HOH *502(H2 O) HELIX 1 1 ASN A 7 TYR A 13 1 7 HELIX 2 2 SER A 15 SER A 23 1 9 HELIX 3 3 SER A 23 LEU A 45 1 23 HELIX 4 4 GLY A 52 LEU A 61 1 10 HELIX 5 5 ASP A 65 VAL A 75 1 11 HELIX 6 6 HIS A 78 ILE A 84 1 7 HELIX 7 7 GLU A 85 ASN A 88 5 4 HELIX 8 8 THR A 101 TYR A 139 1 39 HELIX 9 9 LEU A 158 TYR A 183 1 26 HELIX 10 10 ALA A 195 PHE A 202 1 8 HELIX 11 11 ASP A 205 GLY A 221 1 17 HELIX 12 12 ARG A 235 HIS A 265 1 31 HELIX 13 13 THR A 288 ALA A 312 1 25 HELIX 14 14 VAL A 321 PHE A 352 1 32 HELIX 15 15 TYR A 355 ALA A 371 1 17 HELIX 16 16 ALA A 371 ALA A 382 1 12 HELIX 17 17 GLY A 385 GLN A 407 1 23 HELIX 18 18 ASP A 412 ASP A 420 1 9 HELIX 19 19 ASP A 426 ASP A 436 1 11 HELIX 20 20 LYS A 437 THR A 441 5 5 HELIX 21 21 ALA A 443 TYR A 462 1 20 HELIX 22 22 GLU A 464 TYR A 468 5 5 HELIX 23 23 ASN B 7 TYR B 13 1 7 HELIX 24 24 SER B 15 SER B 23 1 9 HELIX 25 25 SER B 23 LEU B 45 1 23 HELIX 26 26 GLY B 52 LEU B 61 1 10 HELIX 27 27 ASP B 65 THR B 76 1 12 HELIX 28 28 HIS B 78 ARG B 83 5 6 HELIX 29 29 ILE B 84 ALA B 89 1 6 HELIX 30 30 THR B 101 TYR B 139 1 39 HELIX 31 31 LEU B 158 TYR B 183 1 26 HELIX 32 32 ALA B 195 PHE B 202 1 8 HELIX 33 33 ASP B 205 GLY B 221 1 17 HELIX 34 34 ARG B 235 HIS B 265 1 31 HELIX 35 35 THR B 288 ALA B 312 1 25 HELIX 36 36 CYS B 323 PHE B 352 1 30 HELIX 37 37 TYR B 355 ALA B 371 1 17 HELIX 38 38 ALA B 371 GLY B 383 1 13 HELIX 39 39 GLY B 385 GLN B 407 1 23 HELIX 40 40 ASP B 412 ASP B 420 1 9 HELIX 41 41 ASP B 426 LEU B 434 1 9 HELIX 42 42 ASP B 436 THR B 441 5 6 HELIX 43 43 ALA B 443 TYR B 462 1 20 HELIX 44 44 TYR B 462 LYS B 467 1 6 SHEET 1 A 2 VAL A 143 SER A 148 0 SHEET 2 A 2 VAL A 151 THR A 157 -1 O THR A 156 N MET A 144 SHEET 1 B 2 VAL A 268 THR A 269 0 SHEET 2 B 2 GLY A 353 ALA A 354 -1 O GLY A 353 N THR A 269 SHEET 1 C 2 VAL B 143 SER B 148 0 SHEET 2 C 2 VAL B 151 THR B 157 -1 O THR B 156 N MET B 144 SHEET 1 D 2 VAL B 268 THR B 269 0 SHEET 2 D 2 GLY B 353 ALA B 354 -1 O GLY B 353 N THR B 269 CISPEP 1 GLY A 271 PHE A 272 0 0.68 CRYST1 74.600 176.830 73.300 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013405 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013643 0.00000