HEADER TRANSFERASE/PEPTIDE 14-NOV-13 4NM0 TITLE CRYSTAL STRUCTURE OF PEPTIDE INHIBITOR-FREE GSK-3/AXIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGEN SYNTHASE KINASE-3 BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-383; COMPND 5 SYNONYM: GSK-3 BETA, SERINE/THREONINE-PROTEIN KINASE GSK3B; COMPND 6 EC: 2.7.11.26, 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: AXIN-1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 383-402; COMPND 12 SYNONYM: AXIS INHIBITION PROTEIN 1, HAXIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSK3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON-PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: AXIN, AXIN1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON-PLUS RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: MODIFIED PGEX-KG KEYWDS WNT, LRP6, AUTO-INHIBITED, GSK-3, AXIN, KINASE, PRIMED SUBSTRATE, KEYWDS 2 TRANSFERASE-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.L.-H.CHU,J.L.STAMOS,M.D.ENOS,N.SHAH,W.I.WEIS REVDAT 3 20-SEP-23 4NM0 1 REMARK SEQADV LINK REVDAT 2 23-APR-14 4NM0 1 JRNL REVDAT 1 26-MAR-14 4NM0 0 JRNL AUTH J.L.STAMOS,M.L.CHU,M.D.ENOS,N.SHAH,W.I.WEIS JRNL TITL STRUCTURAL BASIS OF GSK-3 INHIBITION BY N-TERMINAL JRNL TITL 2 PHOSPHORYLATION AND BY THE WNT RECEPTOR LRP6. JRNL REF ELIFE V. 3 01998 2014 JRNL REFN ESSN 2050-084X JRNL PMID 24642411 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0527 - 4.7799 1.00 2941 155 0.1836 0.2224 REMARK 3 2 4.7799 - 3.7950 1.00 2752 153 0.1542 0.2019 REMARK 3 3 3.7950 - 3.3156 1.00 2696 139 0.1787 0.2471 REMARK 3 4 3.3156 - 3.0125 1.00 2681 117 0.2114 0.3046 REMARK 3 5 3.0125 - 2.7967 1.00 2650 138 0.2337 0.2965 REMARK 3 6 2.7967 - 2.6318 1.00 2638 139 0.2617 0.2871 REMARK 3 7 2.6318 - 2.5000 1.00 2621 138 0.3163 0.3249 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3079 REMARK 3 ANGLE : 0.626 4198 REMARK 3 CHIRALITY : 0.041 479 REMARK 3 PLANARITY : 0.003 536 REMARK 3 DIHEDRAL : 11.861 1128 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1955 45.7472 3.2834 REMARK 3 T TENSOR REMARK 3 T11: 0.5247 T22: 0.5912 REMARK 3 T33: 0.4820 T12: -0.1022 REMARK 3 T13: 0.1689 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 5.4937 L22: 2.0887 REMARK 3 L33: 3.3373 L12: 0.7480 REMARK 3 L13: -0.2418 L23: -1.7032 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: -0.4831 S13: 0.6214 REMARK 3 S21: 0.5830 S22: -0.0284 S23: 0.3761 REMARK 3 S31: -0.7840 S32: -0.0901 S33: -0.6955 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4437 41.3012 -4.8623 REMARK 3 T TENSOR REMARK 3 T11: 0.4090 T22: 0.5823 REMARK 3 T33: 0.4175 T12: -0.0522 REMARK 3 T13: 0.0580 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 2.1915 L22: 2.6396 REMARK 3 L33: 1.7352 L12: 0.4531 REMARK 3 L13: -0.5659 L23: 1.4732 REMARK 3 S TENSOR REMARK 3 S11: 0.1772 S12: 0.4220 S13: 0.1623 REMARK 3 S21: 0.1901 S22: -0.3018 S23: 0.6654 REMARK 3 S31: 0.3517 S32: -0.5624 S33: 0.0385 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7390 33.2090 -14.3420 REMARK 3 T TENSOR REMARK 3 T11: 0.4153 T22: 0.3319 REMARK 3 T33: 0.2876 T12: -0.0349 REMARK 3 T13: -0.0573 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.8757 L22: 2.3589 REMARK 3 L33: 2.2572 L12: -0.2407 REMARK 3 L13: -0.6952 L23: -0.1690 REMARK 3 S TENSOR REMARK 3 S11: 0.1949 S12: -0.1852 S13: 0.0205 REMARK 3 S21: 0.2539 S22: -0.1097 S23: -0.1238 REMARK 3 S31: 0.3694 S32: -0.2114 S33: -0.0134 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8957 26.9964 -24.9416 REMARK 3 T TENSOR REMARK 3 T11: 0.4148 T22: 0.2774 REMARK 3 T33: 0.3561 T12: 0.0044 REMARK 3 T13: -0.0725 T23: -0.0719 REMARK 3 L TENSOR REMARK 3 L11: 1.8671 L22: 1.1119 REMARK 3 L33: 3.7843 L12: 0.3466 REMARK 3 L13: 0.0906 L23: -0.6137 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: 0.0276 S13: -0.3168 REMARK 3 S21: -0.1285 S22: 0.0498 S23: -0.0321 REMARK 3 S31: 0.5261 S32: 0.0699 S33: -0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 381 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5008 43.8954 -43.5287 REMARK 3 T TENSOR REMARK 3 T11: 0.6720 T22: 0.4476 REMARK 3 T33: 0.3617 T12: -0.1132 REMARK 3 T13: -0.0226 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 4.4011 L22: 3.3652 REMARK 3 L33: 3.7710 L12: 1.0738 REMARK 3 L13: 0.7609 L23: -0.6673 REMARK 3 S TENSOR REMARK 3 S11: 0.0948 S12: 0.5368 S13: 0.8424 REMARK 3 S21: -0.5332 S22: 0.0070 S23: 0.2285 REMARK 3 S31: -0.7624 S32: -0.2608 S33: -0.0320 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20069 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.74300 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4NM7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 35,000, 20MM TRIS 7.5, 300MM REMARK 280 NACL, 5% GLYCEROL, 20MM MGCL2, 400UM ATP, AND 5MM DTT, REMARK 280 MICRODIALYSIS, TEMPERATURE 277K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.60967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 187.21933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 140.41450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 234.02417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.80483 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.60967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 187.21933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 234.02417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 140.41450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.80483 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 4 REMARK 465 PRO A 5 REMARK 465 ARG A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 PHE A 10 REMARK 465 ALA A 11 REMARK 465 GLU A 12 REMARK 465 SER A 13 REMARK 465 CYS A 14 REMARK 465 LYS A 15 REMARK 465 PRO A 16 REMARK 465 VAL A 17 REMARK 465 GLN A 18 REMARK 465 GLN A 19 REMARK 465 PRO A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 LYS A 32 REMARK 465 ASP A 33 REMARK 465 GLY A 34 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 GLY B 379 REMARK 465 GLY B 380 REMARK 465 THR B 402 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 SER A 29 OG REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 SER A 35 OG REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 99 CG CD OE1 NE2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 216 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 HIS A 384 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 381 CG1 CG2 CD1 REMARK 470 LEU B 382 CG CD1 CD2 REMARK 470 ARG B 401 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 29 -164.21 -127.10 REMARK 500 ASP A 49 98.79 -61.33 REMARK 500 ASP A 181 40.86 -156.86 REMARK 500 ASP A 200 85.51 56.90 REMARK 500 CYS A 218 144.11 70.19 REMARK 500 TYR A 221 -27.02 78.46 REMARK 500 ASN A 347 39.22 -97.71 REMARK 500 ASN A 370 79.08 -153.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 186 OD1 REMARK 620 2 ASP A 200 OD2 82.0 REMARK 620 3 ADP A 408 O3B 137.6 68.8 REMARK 620 4 ADP A 408 O1A 81.1 81.8 65.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NM3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ITS OWN PHOSPHORYLATED N-TERMINAL REMARK 900 AUTO-INHIBITORY PS9 PEPTIDE BUT WITHOUT ALF3 REMARK 900 RELATED ID: 4NM5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHOSPHORYLATED WNT RECEPTOR LRP6 C- REMARK 900 MOTIF REMARK 900 RELATED ID: 4NM7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHOSPHORYLATED WNT RECEPTOR LRP6 E- REMARK 900 MOTIF REMARK 900 RELATED ID: 4NU1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ITS OWN PHOSPHORYLATED N-TERMINAL REMARK 900 AUTO-INHIBITORY PS9 PEPTIDE AND ALF3 IS A TRANSITION STATE MIMICRY DBREF 4NM0 A 1 383 UNP P49841 GSK3B_HUMAN 1 383 DBREF 4NM0 B 383 402 UNP O15169 AXIN1_HUMAN 383 402 SEQADV 4NM0 HIS A 384 UNP P49841 EXPRESSION TAG SEQADV 4NM0 HIS A 385 UNP P49841 EXPRESSION TAG SEQADV 4NM0 HIS A 386 UNP P49841 EXPRESSION TAG SEQADV 4NM0 HIS A 387 UNP P49841 EXPRESSION TAG SEQADV 4NM0 HIS A 388 UNP P49841 EXPRESSION TAG SEQADV 4NM0 HIS A 389 UNP P49841 EXPRESSION TAG SEQADV 4NM0 GLY B 379 UNP O15169 EXPRESSION TAG SEQADV 4NM0 GLY B 380 UNP O15169 EXPRESSION TAG SEQADV 4NM0 ILE B 381 UNP O15169 EXPRESSION TAG SEQADV 4NM0 LEU B 382 UNP O15169 EXPRESSION TAG SEQRES 1 A 389 MET SER GLY ARG PRO ARG THR THR SER PHE ALA GLU SER SEQRES 2 A 389 CYS LYS PRO VAL GLN GLN PRO SER ALA PHE GLY SER MET SEQRES 3 A 389 LYS VAL SER ARG ASP LYS ASP GLY SER LYS VAL THR THR SEQRES 4 A 389 VAL VAL ALA THR PRO GLY GLN GLY PRO ASP ARG PRO GLN SEQRES 5 A 389 GLU VAL SER TYR THR ASP THR LYS VAL ILE GLY ASN GLY SEQRES 6 A 389 SER PHE GLY VAL VAL TYR GLN ALA LYS LEU CYS ASP SER SEQRES 7 A 389 GLY GLU LEU VAL ALA ILE LYS LYS VAL LEU GLN ASP LYS SEQRES 8 A 389 ARG PHE LYS ASN ARG GLU LEU GLN ILE MET ARG LYS LEU SEQRES 9 A 389 ASP HIS CYS ASN ILE VAL ARG LEU ARG TYR PHE PHE TYR SEQRES 10 A 389 SER SER GLY GLU LYS LYS ASP GLU VAL TYR LEU ASN LEU SEQRES 11 A 389 VAL LEU ASP TYR VAL PRO GLU THR VAL TYR ARG VAL ALA SEQRES 12 A 389 ARG HIS TYR SER ARG ALA LYS GLN THR LEU PRO VAL ILE SEQRES 13 A 389 TYR VAL LYS LEU TYR MET TYR GLN LEU PHE ARG SER LEU SEQRES 14 A 389 ALA TYR ILE HIS SER PHE GLY ILE CYS HIS ARG ASP ILE SEQRES 15 A 389 LYS PRO GLN ASN LEU LEU LEU ASP PRO ASP THR ALA VAL SEQRES 16 A 389 LEU LYS LEU CYS ASP PHE GLY SER ALA LYS GLN LEU VAL SEQRES 17 A 389 ARG GLY GLU PRO ASN VAL SER TYR ILE CYS SER ARG TYR SEQRES 18 A 389 TYR ARG ALA PRO GLU LEU ILE PHE GLY ALA THR ASP TYR SEQRES 19 A 389 THR SER SER ILE ASP VAL TRP SER ALA GLY CYS VAL LEU SEQRES 20 A 389 ALA GLU LEU LEU LEU GLY GLN PRO ILE PHE PRO GLY ASP SEQRES 21 A 389 SER GLY VAL ASP GLN LEU VAL GLU ILE ILE LYS VAL LEU SEQRES 22 A 389 GLY THR PRO THR ARG GLU GLN ILE ARG GLU MET ASN PRO SEQRES 23 A 389 ASN TYR THR GLU PHE LYS PHE PRO GLN ILE LYS ALA HIS SEQRES 24 A 389 PRO TRP THR LYS VAL PHE ARG PRO ARG THR PRO PRO GLU SEQRES 25 A 389 ALA ILE ALA LEU CYS SER ARG LEU LEU GLU TYR THR PRO SEQRES 26 A 389 THR ALA ARG LEU THR PRO LEU GLU ALA CYS ALA HIS SER SEQRES 27 A 389 PHE PHE ASP GLU LEU ARG ASP PRO ASN VAL LYS LEU PRO SEQRES 28 A 389 ASN GLY ARG ASP THR PRO ALA LEU PHE ASN PHE THR THR SEQRES 29 A 389 GLN GLU LEU SER SER ASN PRO PRO LEU ALA THR ILE LEU SEQRES 30 A 389 ILE PRO PRO HIS ALA ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 24 GLY GLY ILE LEU VAL GLU PRO GLN LYS PHE ALA GLU GLU SEQRES 2 B 24 LEU ILE HIS ARG LEU GLU ALA VAL GLN ARG THR HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET MG A 406 1 HET MG A 407 1 HET ADP A 408 27 HET DTT A 409 8 HET CL A 410 1 HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 GOL 5(C3 H8 O3) FORMUL 8 MG 2(MG 2+) FORMUL 10 ADP C10 H15 N5 O10 P2 FORMUL 11 DTT C4 H10 O2 S2 FORMUL 12 CL CL 1- FORMUL 13 HOH *164(H2 O) HELIX 1 1 ASN A 95 ARG A 102 1 8 HELIX 2 2 VAL A 139 ALA A 149 1 11 HELIX 3 3 PRO A 154 PHE A 175 1 22 HELIX 4 4 LYS A 183 GLN A 185 5 3 HELIX 5 5 ALA A 224 PHE A 229 1 6 HELIX 6 6 SER A 236 GLY A 253 1 18 HELIX 7 7 SER A 261 GLY A 274 1 14 HELIX 8 8 THR A 277 ASN A 285 1 9 HELIX 9 9 PRO A 286 THR A 289 5 4 HELIX 10 10 PRO A 300 PHE A 305 1 6 HELIX 11 11 PRO A 310 ARG A 319 1 10 HELIX 12 12 THR A 324 ARG A 328 5 5 HELIX 13 13 THR A 330 ALA A 336 1 7 HELIX 14 14 HIS A 337 ASP A 345 5 9 HELIX 15 15 ASN A 370 PRO A 372 5 3 HELIX 16 16 LEU A 373 ILE A 378 1 6 HELIX 17 17 PRO A 379 ARG A 383 5 5 HELIX 18 18 GLU B 384 VAL B 399 1 16 SHEET 1 A 8 LYS A 27 SER A 29 0 SHEET 2 A 8 VAL A 37 PRO A 44 -1 O VAL A 37 N SER A 29 SHEET 3 A 8 LEU A 112 SER A 119 -1 O PHE A 115 N THR A 43 SHEET 4 A 8 VAL A 126 ASP A 133 -1 O TYR A 127 N SER A 118 SHEET 5 A 8 LEU A 81 GLN A 89 -1 N ALA A 83 O LEU A 132 SHEET 6 A 8 GLY A 68 LEU A 75 -1 N TYR A 71 O ILE A 84 SHEET 7 A 8 GLN A 52 ASN A 64 -1 N GLY A 63 O VAL A 70 SHEET 8 A 8 VAL A 37 PRO A 44 -1 N VAL A 40 O VAL A 54 SHEET 1 B 3 GLU A 137 THR A 138 0 SHEET 2 B 3 LEU A 187 LEU A 189 -1 O LEU A 189 N GLU A 137 SHEET 3 B 3 LEU A 196 LEU A 198 -1 O LYS A 197 N LEU A 188 SHEET 1 C 2 ILE A 177 CYS A 178 0 SHEET 2 C 2 LYS A 205 GLN A 206 -1 O LYS A 205 N CYS A 178 LINK OD1 ASN A 186 MG MG A 407 1555 1555 2.44 LINK OD2 ASP A 200 MG MG A 407 1555 1555 2.68 LINK MG MG A 406 O1B ADP A 408 1555 1555 2.05 LINK MG MG A 407 O3B ADP A 408 1555 1555 2.07 LINK MG MG A 407 O1A ADP A 408 1555 1555 2.80 SITE 1 AC1 4 TYR A 56 LYS A 86 SER A 118 ASN A 129 SITE 1 AC2 6 ASP A 49 ARG A 50 TYR A 146 TYR A 157 SITE 2 AC2 6 TYR A 161 PRO A 191 SITE 1 AC3 8 ARG A 144 SER A 147 ARG A 148 LEU A 252 SITE 2 AC3 8 GLN A 254 PRO A 255 VAL A 304 HOH A 621 SITE 1 AC4 5 ARG A 96 ARG A 180 LYS A 205 ASN A 213 SITE 2 AC4 5 VAL A 214 SITE 1 AC5 4 LYS A 292 PRO A 294 HOH A 535 GLU B 397 SITE 1 AC6 2 ASP A 200 ADP A 408 SITE 1 AC7 4 LYS A 183 ASN A 186 ASP A 200 ADP A 408 SITE 1 AC8 16 PHE A 67 ALA A 83 LYS A 85 LEU A 132 SITE 2 AC8 16 ASP A 133 TYR A 134 VAL A 135 THR A 138 SITE 3 AC8 16 ARG A 141 GLN A 185 ASN A 186 ASP A 200 SITE 4 AC8 16 MG A 406 MG A 407 HOH A 549 HOH A 622 SITE 1 AC9 5 ARG A 319 THR A 326 ALA A 327 ARG A 328 SITE 2 AC9 5 GLU A 333 SITE 1 BC1 1 LYS A 297 CRYST1 81.303 81.303 280.829 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012300 0.007101 0.000000 0.00000 SCALE2 0.000000 0.014202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003561 0.00000