HEADER TRANSFERASE/PEPTIDE 14-NOV-13 4NM3 TITLE CRYSTAL STRUCTURE OF GSK-3/AXIN COMPLEX BOUND TO PHOSPHORYLATED N- TITLE 2 TERMINAL AUTO-INHIBITORY PS9 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGEN SYNTHASE KINASE-3 BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-383 WITH PHOSPHOYLATED SER9; COMPND 5 SYNONYM: GSK-3 BETA, SERINE/THREONINE-PROTEIN KINASE GSK3B; COMPND 6 EC: 2.7.11.26, 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: AXIN-1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 383-402; COMPND 12 SYNONYM: AXIS INHIBITION PROTEIN 1, HAXIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSK3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON-PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: AXIN, AXIN1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON-PLUS RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: MODIFIED PGEX-KG KEYWDS WNT, LRP6, AUTO-INHIBITED, GSK-3, AXIN, KINASE, PRIMED SUBSTRATE, KEYWDS 2 PHOSPHORYLATED N-TERMINAL AUTO-INHIBITORY PS9 PEPTIDE, TRANSFERASE- KEYWDS 3 PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.L.-H.CHU,J.L.STAMOS,M.D.ENOS,N.SHAH,W.I.WEIS REVDAT 3 20-SEP-23 4NM3 1 REMARK SEQADV LINK REVDAT 2 23-APR-14 4NM3 1 JRNL REVDAT 1 26-MAR-14 4NM3 0 JRNL AUTH J.L.STAMOS,M.L.CHU,M.D.ENOS,N.SHAH,W.I.WEIS JRNL TITL STRUCTURAL BASIS OF GSK-3 INHIBITION BY N-TERMINAL JRNL TITL 2 PHOSPHORYLATION AND BY THE WNT RECEPTOR LRP6. JRNL REF ELIFE V. 3 01998 2014 JRNL REFN ESSN 2050-084X JRNL PMID 24642411 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9698 - 4.8051 1.00 2895 152 0.1944 0.2304 REMARK 3 2 4.8051 - 3.8150 1.00 2687 148 0.1533 0.1952 REMARK 3 3 3.8150 - 3.3330 1.00 2647 134 0.1703 0.2187 REMARK 3 4 3.3330 - 3.0284 1.00 2632 124 0.1875 0.2407 REMARK 3 5 3.0284 - 2.8114 1.00 2593 125 0.2094 0.2936 REMARK 3 6 2.8114 - 2.6457 1.00 2596 142 0.1931 0.2365 REMARK 3 7 2.6457 - 2.5132 1.00 2556 134 0.2135 0.2645 REMARK 3 8 2.5132 - 2.4039 1.00 2544 147 0.2431 0.3191 REMARK 3 9 2.4039 - 2.3113 1.00 2544 140 0.2565 0.3227 REMARK 3 10 2.3113 - 2.2316 1.00 2553 137 0.2995 0.3343 REMARK 3 11 2.2316 - 2.1618 1.00 2513 145 0.3355 0.3615 REMARK 3 12 2.1618 - 2.1000 0.99 2506 130 0.3875 0.4281 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3174 REMARK 3 ANGLE : 0.910 4336 REMARK 3 CHIRALITY : 0.056 497 REMARK 3 PLANARITY : 0.004 550 REMARK 3 DIHEDRAL : 11.943 1170 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8559 44.6289 -23.0835 REMARK 3 T TENSOR REMARK 3 T11: 1.3195 T22: 1.8097 REMARK 3 T33: 1.0189 T12: 0.0829 REMARK 3 T13: -0.2290 T23: -0.2833 REMARK 3 L TENSOR REMARK 3 L11: 3.1455 L22: 1.6820 REMARK 3 L33: 1.2010 L12: -0.0557 REMARK 3 L13: 0.8478 L23: -1.2885 REMARK 3 S TENSOR REMARK 3 S11: 0.6824 S12: -0.5660 S13: 0.4849 REMARK 3 S21: 0.3718 S22: 0.7012 S23: -1.1534 REMARK 3 S31: 0.3197 S32: -0.0107 S33: -1.2520 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8151 45.6900 2.4732 REMARK 3 T TENSOR REMARK 3 T11: 0.4606 T22: 0.5990 REMARK 3 T33: 0.4285 T12: -0.1257 REMARK 3 T13: 0.1088 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 8.1448 L22: 4.7919 REMARK 3 L33: 2.9013 L12: 1.9560 REMARK 3 L13: -0.6675 L23: -0.5034 REMARK 3 S TENSOR REMARK 3 S11: -0.1616 S12: -0.3950 S13: 0.9766 REMARK 3 S21: 0.4283 S22: 0.0521 S23: 0.3824 REMARK 3 S31: -0.4850 S32: -0.1533 S33: -0.0286 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5598 46.2167 -16.6065 REMARK 3 T TENSOR REMARK 3 T11: 0.8171 T22: 1.4555 REMARK 3 T33: 1.7308 T12: -0.1699 REMARK 3 T13: -0.1507 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.0676 L22: 2.2788 REMARK 3 L33: 4.6130 L12: -0.4019 REMARK 3 L13: -1.7568 L23: -0.2625 REMARK 3 S TENSOR REMARK 3 S11: -0.3040 S12: 0.2521 S13: -0.9045 REMARK 3 S21: -0.0578 S22: -0.6581 S23: -1.0424 REMARK 3 S31: -1.1054 S32: -0.2952 S33: 0.8201 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5936 39.7060 -3.8508 REMARK 3 T TENSOR REMARK 3 T11: 0.3249 T22: 0.3984 REMARK 3 T33: 0.3323 T12: -0.1414 REMARK 3 T13: 0.0431 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 8.0359 L22: 5.2110 REMARK 3 L33: 4.9717 L12: -1.9785 REMARK 3 L13: -1.2057 L23: 3.7772 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: -0.1519 S13: 0.2520 REMARK 3 S21: 0.6143 S22: -0.2130 S23: 0.8086 REMARK 3 S31: 0.4152 S32: -0.3263 S33: 0.1931 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5298 33.0370 -14.5813 REMARK 3 T TENSOR REMARK 3 T11: 0.3619 T22: 0.2806 REMARK 3 T33: 0.2448 T12: 0.0162 REMARK 3 T13: -0.0576 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 6.0667 L22: 3.6951 REMARK 3 L33: 3.8390 L12: 0.9490 REMARK 3 L13: 0.4870 L23: 0.3606 REMARK 3 S TENSOR REMARK 3 S11: 0.1528 S12: -0.1741 S13: -0.1025 REMARK 3 S21: 0.2273 S22: -0.0921 S23: 0.0647 REMARK 3 S31: 0.4392 S32: -0.1579 S33: -0.0357 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4739 26.7170 -24.9527 REMARK 3 T TENSOR REMARK 3 T11: 0.4784 T22: 0.2641 REMARK 3 T33: 0.4114 T12: 0.0277 REMARK 3 T13: -0.1032 T23: -0.0590 REMARK 3 L TENSOR REMARK 3 L11: 2.4430 L22: 1.8680 REMARK 3 L33: 4.8787 L12: 0.4348 REMARK 3 L13: -0.6417 L23: -0.5502 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: -0.1456 S13: -0.4920 REMARK 3 S21: -0.1115 S22: 0.0222 S23: 0.0378 REMARK 3 S31: 0.8249 S32: 0.1430 S33: -0.0424 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 383 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4179 43.2416 -44.2805 REMARK 3 T TENSOR REMARK 3 T11: 0.5931 T22: 0.3391 REMARK 3 T33: 0.3220 T12: -0.0805 REMARK 3 T13: -0.0726 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.6473 L22: 5.6406 REMARK 3 L33: 4.7204 L12: 2.3400 REMARK 3 L13: -1.3464 L23: -2.5158 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: 0.6128 S13: 1.0063 REMARK 3 S21: 0.0307 S22: 0.0362 S23: 0.0896 REMARK 3 S31: -0.5853 S32: 0.2324 S33: -0.0215 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33093 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 38.963 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 17.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 4.88100 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4NM7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 35,000, 20MM TRIS 7.5, 300MM REMARK 280 NACL, 5% GLYCEROL, 10MM MGCL2, 200UM ATP, AND 5MM DTT, REMARK 280 MICRODIALYSIS, TEMPERATURE 277K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.69500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 187.39000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 140.54250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 234.23750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.84750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.69500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 187.39000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 234.23750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 140.54250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.84750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 11 REMARK 465 GLU A 12 REMARK 465 SER A 13 REMARK 465 CYS A 14 REMARK 465 LYS A 15 REMARK 465 PRO A 16 REMARK 465 VAL A 17 REMARK 465 GLN A 18 REMARK 465 GLN A 19 REMARK 465 PRO A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 ASP A 31 REMARK 465 LYS A 32 REMARK 465 ASP A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 120 REMARK 465 GLU A 121 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 GLY B 379 REMARK 465 GLY B 380 REMARK 465 ILE B 381 REMARK 465 LEU B 382 REMARK 465 THR B 402 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 SER A 35 OG REMARK 470 GLN A 89 CG CD OE1 NE2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 SER A 119 OG REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 347 CG OD1 ND2 REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 HIS A 384 CG ND1 CD2 CE1 NE2 REMARK 470 VAL B 383 CG1 CG2 REMARK 470 ARG B 401 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 636 O HOH A 661 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 29 -169.06 -119.20 REMARK 500 ASN A 64 -118.34 -97.32 REMARK 500 ASP A 181 40.21 -150.85 REMARK 500 ASP A 200 87.87 63.17 REMARK 500 CYS A 218 145.47 70.53 REMARK 500 CYS A 218 146.37 69.15 REMARK 500 TYR A 221 -31.11 86.00 REMARK 500 ASN A 370 74.58 -163.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 186 OD1 REMARK 620 2 ASP A 200 OD2 104.1 REMARK 620 3 ADP A 409 O1A 88.0 84.8 REMARK 620 4 ADP A 409 O1B 176.7 72.6 92.3 REMARK 620 5 HOH A 584 O 98.2 81.0 165.6 80.8 REMARK 620 6 HOH A 671 O 94.0 161.0 101.7 89.2 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 200 OD1 REMARK 620 2 ASP A 200 OD2 48.6 REMARK 620 3 ADP A 409 O3B 104.2 81.6 REMARK 620 4 HOH A 532 O 120.9 72.7 68.6 REMARK 620 5 HOH A 533 O 72.3 66.7 140.6 79.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NM0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IS A PEPTIDE INHIBITOR-FREE GSK-3/AXIN COMPLEX REMARK 900 RELATED ID: 4NM5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHOSPHORYLATED WNT RECEPTOR LRP6 C- REMARK 900 MOTIF REMARK 900 RELATED ID: 4NM7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHOSPHORYLATED WNT RECEPTOR LRP6 E- REMARK 900 MOTIF REMARK 900 RELATED ID: 4NU1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ITS OWN PHOSPHORYLATED N-TERMINAL REMARK 900 AUTO-INHIBITORY PS9 PEPTIDE AND ALF3 IS A TRANSITION STATE MIMICRY DBREF 4NM3 A 1 383 UNP P49841 GSK3B_HUMAN 1 383 DBREF 4NM3 B 383 402 UNP O15169 AXIN1_HUMAN 383 402 SEQADV 4NM3 HIS A 384 UNP P49841 EXPRESSION TAG SEQADV 4NM3 HIS A 385 UNP P49841 EXPRESSION TAG SEQADV 4NM3 HIS A 386 UNP P49841 EXPRESSION TAG SEQADV 4NM3 HIS A 387 UNP P49841 EXPRESSION TAG SEQADV 4NM3 HIS A 388 UNP P49841 EXPRESSION TAG SEQADV 4NM3 HIS A 389 UNP P49841 EXPRESSION TAG SEQADV 4NM3 GLY B 379 UNP O15169 EXPRESSION TAG SEQADV 4NM3 GLY B 380 UNP O15169 EXPRESSION TAG SEQADV 4NM3 ILE B 381 UNP O15169 EXPRESSION TAG SEQADV 4NM3 LEU B 382 UNP O15169 EXPRESSION TAG SEQRES 1 A 389 MET SER GLY ARG PRO ARG THR THR SEP PHE ALA GLU SER SEQRES 2 A 389 CYS LYS PRO VAL GLN GLN PRO SER ALA PHE GLY SER MET SEQRES 3 A 389 LYS VAL SER ARG ASP LYS ASP GLY SER LYS VAL THR THR SEQRES 4 A 389 VAL VAL ALA THR PRO GLY GLN GLY PRO ASP ARG PRO GLN SEQRES 5 A 389 GLU VAL SER TYR THR ASP THR LYS VAL ILE GLY ASN GLY SEQRES 6 A 389 SER PHE GLY VAL VAL TYR GLN ALA LYS LEU CYS ASP SER SEQRES 7 A 389 GLY GLU LEU VAL ALA ILE LYS LYS VAL LEU GLN ASP LYS SEQRES 8 A 389 ARG PHE LYS ASN ARG GLU LEU GLN ILE MET ARG LYS LEU SEQRES 9 A 389 ASP HIS CYS ASN ILE VAL ARG LEU ARG TYR PHE PHE TYR SEQRES 10 A 389 SER SER GLY GLU LYS LYS ASP GLU VAL TYR LEU ASN LEU SEQRES 11 A 389 VAL LEU ASP TYR VAL PRO GLU THR VAL TYR ARG VAL ALA SEQRES 12 A 389 ARG HIS TYR SER ARG ALA LYS GLN THR LEU PRO VAL ILE SEQRES 13 A 389 TYR VAL LYS LEU TYR MET TYR GLN LEU PHE ARG SER LEU SEQRES 14 A 389 ALA TYR ILE HIS SER PHE GLY ILE CYS HIS ARG ASP ILE SEQRES 15 A 389 LYS PRO GLN ASN LEU LEU LEU ASP PRO ASP THR ALA VAL SEQRES 16 A 389 LEU LYS LEU CYS ASP PHE GLY SER ALA LYS GLN LEU VAL SEQRES 17 A 389 ARG GLY GLU PRO ASN VAL SER TYR ILE CYS SER ARG TYR SEQRES 18 A 389 TYR ARG ALA PRO GLU LEU ILE PHE GLY ALA THR ASP TYR SEQRES 19 A 389 THR SER SER ILE ASP VAL TRP SER ALA GLY CYS VAL LEU SEQRES 20 A 389 ALA GLU LEU LEU LEU GLY GLN PRO ILE PHE PRO GLY ASP SEQRES 21 A 389 SER GLY VAL ASP GLN LEU VAL GLU ILE ILE LYS VAL LEU SEQRES 22 A 389 GLY THR PRO THR ARG GLU GLN ILE ARG GLU MET ASN PRO SEQRES 23 A 389 ASN TYR THR GLU PHE LYS PHE PRO GLN ILE LYS ALA HIS SEQRES 24 A 389 PRO TRP THR LYS VAL PHE ARG PRO ARG THR PRO PRO GLU SEQRES 25 A 389 ALA ILE ALA LEU CYS SER ARG LEU LEU GLU TYR THR PRO SEQRES 26 A 389 THR ALA ARG LEU THR PRO LEU GLU ALA CYS ALA HIS SER SEQRES 27 A 389 PHE PHE ASP GLU LEU ARG ASP PRO ASN VAL LYS LEU PRO SEQRES 28 A 389 ASN GLY ARG ASP THR PRO ALA LEU PHE ASN PHE THR THR SEQRES 29 A 389 GLN GLU LEU SER SER ASN PRO PRO LEU ALA THR ILE LEU SEQRES 30 A 389 ILE PRO PRO HIS ALA ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 24 GLY GLY ILE LEU VAL GLU PRO GLN LYS PHE ALA GLU GLU SEQRES 2 B 24 LEU ILE HIS ARG LEU GLU ALA VAL GLN ARG THR MODRES 4NM3 SEP A 9 SER PHOSPHOSERINE HET SEP A 9 10 HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET MG A 405 1 HET MG A 406 1 HET CL A 407 1 HET DTT A 408 8 HET ADP A 409 27 HETNAM SEP PHOSPHOSERINE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 MG 2(MG 2+) FORMUL 9 CL CL 1- FORMUL 10 DTT C4 H10 O2 S2 FORMUL 11 ADP C10 H15 N5 O10 P2 FORMUL 12 HOH *197(H2 O) HELIX 1 1 ARG A 96 ARG A 102 1 7 HELIX 2 2 VAL A 139 ALA A 149 1 11 HELIX 3 3 PRO A 154 SER A 174 1 21 HELIX 4 4 LYS A 183 GLN A 185 5 3 HELIX 5 5 ALA A 224 PHE A 229 1 6 HELIX 6 6 SER A 236 GLY A 253 1 18 HELIX 7 7 SER A 261 GLY A 274 1 14 HELIX 8 8 THR A 277 ASN A 285 1 9 HELIX 9 9 PRO A 286 THR A 289 5 4 HELIX 10 10 PRO A 300 PHE A 305 1 6 HELIX 11 11 PRO A 310 LEU A 321 1 12 HELIX 12 12 THR A 324 ARG A 328 5 5 HELIX 13 13 THR A 330 ALA A 336 1 7 HELIX 14 14 HIS A 337 ASP A 345 5 9 HELIX 15 15 ASN A 370 PRO A 372 5 3 HELIX 16 16 LEU A 373 ILE A 378 1 6 HELIX 17 18 GLU B 384 ARG B 401 1 18 SHEET 1 A 8 LYS A 27 SER A 29 0 SHEET 2 A 8 VAL A 37 PRO A 44 -1 O VAL A 37 N SER A 29 SHEET 3 A 8 LEU A 112 SER A 118 -1 O PHE A 115 N THR A 43 SHEET 4 A 8 TYR A 127 ASP A 133 -1 O TYR A 127 N SER A 118 SHEET 5 A 8 LEU A 81 LEU A 88 -1 N VAL A 87 O LEU A 128 SHEET 6 A 8 GLY A 68 LEU A 75 -1 N VAL A 69 O LYS A 86 SHEET 7 A 8 GLN A 52 GLY A 65 -1 N LYS A 60 O GLN A 72 SHEET 8 A 8 VAL A 37 PRO A 44 -1 N VAL A 40 O VAL A 54 SHEET 1 B 3 GLU A 137 THR A 138 0 SHEET 2 B 3 LEU A 187 ASP A 190 -1 O LEU A 189 N GLU A 137 SHEET 3 B 3 VAL A 195 LEU A 198 -1 O LYS A 197 N LEU A 188 SHEET 1 C 2 ILE A 177 CYS A 178 0 SHEET 2 C 2 LYS A 205 GLN A 206 -1 O LYS A 205 N CYS A 178 LINK C THR A 8 N SEP A 9 1555 1555 1.33 LINK C SEP A 9 N PHE A 10 1555 1555 1.33 LINK OD1 ASN A 186 MG MG A 405 1555 1555 2.13 LINK OD2 ASP A 200 MG MG A 405 1555 1555 2.22 LINK OD1 ASP A 200 MG MG A 406 1555 1555 2.31 LINK OD2 ASP A 200 MG MG A 406 1555 1555 2.85 LINK MG MG A 405 O1A ADP A 409 1555 1555 2.09 LINK MG MG A 405 O1B ADP A 409 1555 1555 2.35 LINK MG MG A 405 O HOH A 584 1555 1555 2.32 LINK MG MG A 405 O HOH A 671 1555 1555 2.05 LINK MG MG A 406 O3B ADP A 409 1555 1555 2.20 LINK MG MG A 406 O HOH A 532 1555 1555 2.49 LINK MG MG A 406 O HOH A 533 1555 1555 2.80 SITE 1 AC1 5 TYR A 56 TYR A 71 LYS A 86 SER A 118 SITE 2 AC1 5 ASN A 129 SITE 1 AC2 7 ARG A 144 SER A 147 ARG A 148 LEU A 252 SITE 2 AC2 7 GLN A 254 PRO A 255 VAL A 304 SITE 1 AC3 9 ASP A 49 ARG A 50 PRO A 51 VAL A 142 SITE 2 AC3 9 TYR A 146 LEU A 153 TYR A 157 TYR A 161 SITE 3 AC3 9 PRO A 191 SITE 1 AC4 3 LYS A 271 HIS A 299 HOH A 656 SITE 1 AC5 5 ASN A 186 ASP A 200 ADP A 409 HOH A 584 SITE 2 AC5 5 HOH A 671 SITE 1 AC6 4 ASP A 200 ADP A 409 HOH A 532 HOH A 533 SITE 1 AC7 2 ILE A 296 LYS A 297 SITE 1 AC8 5 ARG A 319 THR A 326 ARG A 328 THR A 330 SITE 2 AC8 5 GLU A 333 SITE 1 AC9 25 GLY A 63 ASN A 64 GLY A 65 SER A 66 SITE 2 AC9 25 PHE A 67 GLY A 68 VAL A 70 ALA A 83 SITE 3 AC9 25 LYS A 85 VAL A 110 ASP A 133 TYR A 134 SITE 4 AC9 25 VAL A 135 THR A 138 ARG A 141 GLN A 185 SITE 5 AC9 25 ASN A 186 LEU A 188 ASP A 200 MG A 405 SITE 6 AC9 25 MG A 406 HOH A 516 HOH A 532 HOH A 584 SITE 7 AC9 25 HOH A 671 CRYST1 81.032 81.032 281.085 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012341 0.007125 0.000000 0.00000 SCALE2 0.000000 0.014250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003558 0.00000