HEADER IMMUNE SYSTEM 14-NOV-13 4NM4 TITLE CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY CR8043 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY CR8043, LIGHT CHAIN; COMPND 3 CHAIN: L, M; COMPND 4 SYNONYM: IMMUNOGLOBULIN KAPPA LIGHT CHAIN EU; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY CR8043, HEAVY CHAIN; COMPND 7 CHAIN: H, I SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN, HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN, HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS IMMUNE SYSTEM, IMMUNE RECOGNITION, ANTIBODY, FAB, IMMUNOGLOBULIN, KEYWDS 2 INFLUENZA HEMAGGLUTININ EXPDTA X-RAY DIFFRACTION AUTHOR P.S.LEE,I.A.WILSON REVDAT 5 06-NOV-24 4NM4 1 REMARK REVDAT 4 20-SEP-23 4NM4 1 REMARK REVDAT 3 21-JUN-17 4NM4 1 DBREF REVDAT 2 22-JAN-14 4NM4 1 JRNL REVDAT 1 25-DEC-13 4NM4 0 JRNL AUTH R.H.FRIESEN,P.S.LEE,E.J.STOOP,R.M.HOFFMAN,D.C.EKIERT, JRNL AUTH 2 G.BHABHA,W.YU,J.JURASZEK,W.KOUDSTAAL,M.JONGENEELEN, JRNL AUTH 3 H.J.KORSE,C.OPHORST,E.C.BRINKMAN-VAN DER LINDEN,M.THROSBY, JRNL AUTH 4 M.J.KWAKKENBOS,A.Q.BAKKER,T.BEAUMONT,H.SPITS,T.KWAKS, JRNL AUTH 5 R.VOGELS,A.B.WARD,J.GOUDSMIT,I.A.WILSON JRNL TITL A COMMON SOLUTION TO GROUP 2 INFLUENZA VIRUS NEUTRALIZATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 445 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24335589 JRNL DOI 10.1073/PNAS.1319058110 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 31427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4531 - 5.8894 0.96 2673 144 0.1560 0.1882 REMARK 3 2 5.8894 - 4.6762 0.98 2758 123 0.1323 0.1895 REMARK 3 3 4.6762 - 4.0856 0.98 2679 178 0.1345 0.2061 REMARK 3 4 4.0856 - 3.7122 0.98 2736 138 0.1601 0.2037 REMARK 3 5 3.7122 - 3.4463 0.98 2704 156 0.1732 0.2495 REMARK 3 6 3.4463 - 3.2432 0.98 2730 143 0.1931 0.2375 REMARK 3 7 3.2432 - 3.0808 0.98 2741 152 0.2095 0.2690 REMARK 3 8 3.0808 - 2.9467 0.98 2691 143 0.2191 0.2836 REMARK 3 9 2.9467 - 2.8333 0.98 2725 136 0.2264 0.3090 REMARK 3 10 2.8333 - 2.7355 0.97 2703 137 0.2491 0.2837 REMARK 3 11 2.7355 - 2.6500 0.96 2710 127 0.2778 0.3642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6909 REMARK 3 ANGLE : 1.358 9383 REMARK 3 CHIRALITY : 0.083 1049 REMARK 3 PLANARITY : 0.007 1189 REMARK 3 DIHEDRAL : 16.266 2452 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN H AND RESID 1:121 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0744 -3.6360 18.8547 REMARK 3 T TENSOR REMARK 3 T11: 0.5132 T22: 0.2965 REMARK 3 T33: 0.3101 T12: 0.0262 REMARK 3 T13: -0.0443 T23: 0.0506 REMARK 3 L TENSOR REMARK 3 L11: 0.6932 L22: 3.1617 REMARK 3 L33: 2.5514 L12: 0.0887 REMARK 3 L13: 0.3044 L23: 0.9992 REMARK 3 S TENSOR REMARK 3 S11: 0.0497 S12: -0.2687 S13: -0.2292 REMARK 3 S21: 0.4898 S22: -0.0144 S23: -0.2202 REMARK 3 S31: 0.5908 S32: 0.0223 S33: -0.0170 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN H AND RESID 122:215 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5842 -12.3730 -15.2798 REMARK 3 T TENSOR REMARK 3 T11: 0.5339 T22: 0.3066 REMARK 3 T33: 0.3477 T12: 0.0256 REMARK 3 T13: -0.1032 T23: 0.0961 REMARK 3 L TENSOR REMARK 3 L11: 1.3466 L22: 1.7877 REMARK 3 L33: 1.5592 L12: -0.4007 REMARK 3 L13: -0.0002 L23: 0.2022 REMARK 3 S TENSOR REMARK 3 S11: 0.1249 S12: 0.1885 S13: -0.1368 REMARK 3 S21: -0.0146 S22: -0.2332 S23: -0.0993 REMARK 3 S31: 0.0085 S32: 0.1224 S33: 0.0651 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN L AND RESID 1:114 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5268 15.6623 10.3069 REMARK 3 T TENSOR REMARK 3 T11: 0.3103 T22: 0.2060 REMARK 3 T33: 0.3029 T12: 0.0301 REMARK 3 T13: -0.0546 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.7224 L22: 2.4071 REMARK 3 L33: 1.9638 L12: 0.5568 REMARK 3 L13: 0.4663 L23: 0.4300 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: -0.0638 S13: 0.1494 REMARK 3 S21: -0.3631 S22: -0.0860 S23: 0.3917 REMARK 3 S31: -0.0798 S32: -0.1035 S33: 0.1099 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN L AND RESID 115:213 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4140 -5.9674 -16.1323 REMARK 3 T TENSOR REMARK 3 T11: 0.5085 T22: 0.3574 REMARK 3 T33: 0.4457 T12: 0.0423 REMARK 3 T13: -0.1390 T23: -0.0858 REMARK 3 L TENSOR REMARK 3 L11: 1.8357 L22: 2.4129 REMARK 3 L33: 1.8949 L12: -0.2823 REMARK 3 L13: 0.7686 L23: -0.4447 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: 0.0135 S13: -0.0731 REMARK 3 S21: -0.4323 S22: -0.1453 S23: 0.6546 REMARK 3 S31: -0.1014 S32: -0.3341 S33: 0.1516 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN I AND RESID 1:121 REMARK 3 ORIGIN FOR THE GROUP (A): 44.4288 29.1808 4.6673 REMARK 3 T TENSOR REMARK 3 T11: 0.3464 T22: 0.4749 REMARK 3 T33: 0.3667 T12: 0.0328 REMARK 3 T13: 0.0948 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 3.4874 L22: 1.0050 REMARK 3 L33: 2.0615 L12: -0.1096 REMARK 3 L13: 0.5457 L23: 0.0778 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: 0.6461 S13: -0.3581 REMARK 3 S21: -0.3273 S22: -0.0535 S23: -0.2913 REMARK 3 S31: 0.1132 S32: 0.4686 S33: -0.0145 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN I AND RESID 122:215 REMARK 3 ORIGIN FOR THE GROUP (A): 54.1290 31.6810 40.8641 REMARK 3 T TENSOR REMARK 3 T11: 0.3083 T22: 0.4947 REMARK 3 T33: 0.2922 T12: -0.0332 REMARK 3 T13: 0.0805 T23: -0.0704 REMARK 3 L TENSOR REMARK 3 L11: 2.7905 L22: 2.7255 REMARK 3 L33: 0.9619 L12: -0.1525 REMARK 3 L13: 0.0863 L23: -0.3739 REMARK 3 S TENSOR REMARK 3 S11: 0.1273 S12: -0.4600 S13: -0.0207 REMARK 3 S21: 0.4798 S22: -0.0676 S23: -0.1376 REMARK 3 S31: -0.0517 S32: 0.1127 S33: -0.0430 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN M AND RESID 1:114 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1707 37.2943 14.1689 REMARK 3 T TENSOR REMARK 3 T11: 0.2692 T22: 0.2490 REMARK 3 T33: 0.3152 T12: 0.0435 REMARK 3 T13: 0.0030 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.6087 L22: 2.4189 REMARK 3 L33: 2.0585 L12: 0.4580 REMARK 3 L13: 0.1870 L23: 0.8022 REMARK 3 S TENSOR REMARK 3 S11: -0.1421 S12: -0.1161 S13: 0.2781 REMARK 3 S21: -0.1980 S22: 0.0004 S23: 0.1945 REMARK 3 S31: -0.1616 S32: -0.0838 S33: 0.1264 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN M AND RESID 115:213 REMARK 3 ORIGIN FOR THE GROUP (A): 49.6391 46.7715 40.6838 REMARK 3 T TENSOR REMARK 3 T11: 0.4813 T22: 0.3677 REMARK 3 T33: 0.3886 T12: 0.0094 REMARK 3 T13: 0.0026 T23: -0.0935 REMARK 3 L TENSOR REMARK 3 L11: 3.2720 L22: 2.6983 REMARK 3 L33: 2.4984 L12: -0.0933 REMARK 3 L13: 0.7471 L23: 0.4037 REMARK 3 S TENSOR REMARK 3 S11: -0.2216 S12: -0.2057 S13: 0.5180 REMARK 3 S21: 0.1143 S22: 0.0252 S23: -0.1842 REMARK 3 S31: -0.6168 S32: -0.1419 S33: 0.1563 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31483 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : 0.51500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1VGE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 0.1 M HEPES PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 214 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 CYS H 216 REMARK 465 CYS M 214 REMARK 465 CYS I 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 51 -23.95 59.19 REMARK 500 ALA L 84 -176.58 -174.52 REMARK 500 LYS L 188 -29.62 -144.07 REMARK 500 ALA H 100 -36.46 82.78 REMARK 500 SER M 51 -29.28 59.21 REMARK 500 ALA M 84 -177.72 -172.97 REMARK 500 LYS M 188 -28.60 -144.38 REMARK 500 ARG M 211 109.14 -58.74 REMARK 500 ALA I 100 -36.27 81.46 REMARK 500 SER I 156 18.32 59.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG I 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MN8 RELATED DB: PDB DBREF 4NM4 L 1 114 PDB 4NM4 4NM4 1 114 DBREF 4NM4 L 115 214 UNP P0DOX7 IGK_HUMAN 115 214 DBREF 4NM4 H 1 121 PDB 4NM4 4NM4 1 121 DBREF 4NM4 H 122 216 UNP Q6N089 Q6N089_HUMAN 151 245 DBREF 4NM4 M 1 114 PDB 4NM4 4NM4 1 114 DBREF 4NM4 M 115 214 UNP P0DOX7 IGK_HUMAN 115 214 DBREF 4NM4 I 1 121 PDB 4NM4 4NM4 1 121 DBREF 4NM4 I 122 216 UNP Q6N089 Q6N089_HUMAN 151 245 SEQRES 1 L 220 ASP ILE GLN MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 220 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 L 220 GLN SER VAL PHE SER SER SER THR ASN LYS ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS VAL SEQRES 5 L 220 LEU ILE TYR TRP SER SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE SER ALA SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER LEU GLN ALA ALA ASP VAL ALA VAL SEQRES 8 L 220 TYR TYR CYS HIS GLN TYR TYR THR ALA PRO TRP THR PHE SEQRES 9 L 220 GLY GLN GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 224 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 224 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 224 TYR THR PHE THR ALA TYR SER MET HIS TRP VAL ARG GLN SEQRES 4 H 224 ALA PRO GLY GLN SER LEU GLU TRP LEU GLY TRP ILE ASN SEQRES 5 H 224 THR ALA ILE GLY ASN THR GLN TYR SER GLN LYS PHE GLN SEQRES 6 H 224 ASP ARG VAL THR ILE THR ARG ASP THR SER ALA ARG THR SEQRES 7 H 224 SER TYR MET GLU LEU SER SER LEU ARG SER GLY ASP THR SEQRES 8 H 224 ALA VAL TYR PHE CYS ALA ARG GLY ALA SER TRP ASP ALA SEQRES 9 H 224 ARG GLY TRP SER GLY TYR TRP GLY LYS GLY THR LEU VAL SEQRES 10 H 224 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 224 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 224 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 224 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 224 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 224 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 224 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 224 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 H 224 LYS SER CYS SEQRES 1 M 220 ASP ILE GLN MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 M 220 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 M 220 GLN SER VAL PHE SER SER SER THR ASN LYS ASN TYR LEU SEQRES 4 M 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS VAL SEQRES 5 M 220 LEU ILE TYR TRP SER SER THR ARG GLU SER GLY VAL PRO SEQRES 6 M 220 ASP ARG PHE SER ALA SER GLY SER GLY THR ASP PHE THR SEQRES 7 M 220 LEU THR ILE SER SER LEU GLN ALA ALA ASP VAL ALA VAL SEQRES 8 M 220 TYR TYR CYS HIS GLN TYR TYR THR ALA PRO TRP THR PHE SEQRES 9 M 220 GLY GLN GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA SEQRES 10 M 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 M 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 M 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 M 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 M 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 M 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 M 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 M 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 I 224 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 I 224 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 I 224 TYR THR PHE THR ALA TYR SER MET HIS TRP VAL ARG GLN SEQRES 4 I 224 ALA PRO GLY GLN SER LEU GLU TRP LEU GLY TRP ILE ASN SEQRES 5 I 224 THR ALA ILE GLY ASN THR GLN TYR SER GLN LYS PHE GLN SEQRES 6 I 224 ASP ARG VAL THR ILE THR ARG ASP THR SER ALA ARG THR SEQRES 7 I 224 SER TYR MET GLU LEU SER SER LEU ARG SER GLY ASP THR SEQRES 8 I 224 ALA VAL TYR PHE CYS ALA ARG GLY ALA SER TRP ASP ALA SEQRES 9 I 224 ARG GLY TRP SER GLY TYR TRP GLY LYS GLY THR LEU VAL SEQRES 10 I 224 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 I 224 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 I 224 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 I 224 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 I 224 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 I 224 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 I 224 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 I 224 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 I 224 LYS SER CYS HET PEG L 301 7 HET PEG L 302 7 HET PEG I 301 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 PEG 3(C4 H10 O3) FORMUL 8 HOH *9(H2 O) HELIX 1 1 GLN L 79 VAL L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 GLU L 187 1 5 HELIX 4 4 THR H 28 TYR H 32 5 5 HELIX 5 5 GLN H 61 GLN H 64 5 4 HELIX 6 6 ARG H 83 THR H 87 5 5 HELIX 7 7 SER H 156 ALA H 158 5 3 HELIX 8 8 SER H 187 LEU H 189 5 3 HELIX 9 9 LYS H 201 ASN H 204 5 4 HELIX 10 10 GLN M 79 VAL M 83 5 5 HELIX 11 11 SER M 121 SER M 127 1 7 HELIX 12 12 LYS M 183 GLU M 187 1 5 HELIX 13 13 THR I 28 TYR I 32 5 5 HELIX 14 14 GLN I 61 GLN I 64 5 4 HELIX 15 15 ARG I 83 THR I 87 5 5 HELIX 16 16 SER I 156 ALA I 158 5 3 HELIX 17 17 SER I 187 LEU I 189 5 3 HELIX 18 18 LYS I 201 ASN I 204 5 4 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ASN L 22 N SER L 7 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 B 6 SER L 10 VAL L 13 0 SHEET 2 B 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 B 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 C 4 SER L 10 VAL L 13 0 SHEET 2 C 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 C 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 2 PHE L 27C SER L 27D 0 SHEET 2 D 2 LYS L 30 ASN L 31 -1 O LYS L 30 N SER L 27D SHEET 1 E 4 SER L 114 PHE L 118 0 SHEET 2 E 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 E 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 E 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 F 4 ALA L 153 LEU L 154 0 SHEET 2 F 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 F 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 F 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 G 4 GLN H 3 GLN H 6 0 SHEET 2 G 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 G 4 THR H 77 LEU H 82 -1 O MET H 80 N LEU H 20 SHEET 4 G 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 H 6 GLU H 10 LYS H 12 0 SHEET 2 H 6 THR H 107 VAL H 111 1 O LEU H 108 N GLU H 10 SHEET 3 H 6 ALA H 88 GLY H 95 -1 N TYR H 90 O THR H 107 SHEET 4 H 6 MET H 34 GLN H 39 -1 N VAL H 37 O PHE H 91 SHEET 5 H 6 LEU H 45 ILE H 51 -1 O LEU H 48 N TRP H 36 SHEET 6 H 6 THR H 57 TYR H 59 -1 O GLN H 58 N TRP H 50 SHEET 1 I 4 GLU H 10 LYS H 12 0 SHEET 2 I 4 THR H 107 VAL H 111 1 O LEU H 108 N GLU H 10 SHEET 3 I 4 ALA H 88 GLY H 95 -1 N TYR H 90 O THR H 107 SHEET 4 I 4 SER H 100D TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 J 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 J 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 K 4 SER H 120 LEU H 124 0 SHEET 2 K 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 K 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 K 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 L 3 THR H 151 TRP H 154 0 SHEET 2 L 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 L 3 THR H 205 VAL H 211 -1 O THR H 205 N HIS H 200 SHEET 1 M 4 MET M 4 SER M 7 0 SHEET 2 M 4 ALA M 19 SER M 25 -1 O LYS M 24 N THR M 5 SHEET 3 M 4 ASP M 70 ILE M 75 -1 O PHE M 71 N CYS M 23 SHEET 4 M 4 PHE M 62 SER M 67 -1 N SER M 63 O THR M 74 SHEET 1 N 6 SER M 10 VAL M 13 0 SHEET 2 N 6 THR M 102 ILE M 106 1 O GLU M 105 N LEU M 11 SHEET 3 N 6 VAL M 85 GLN M 90 -1 N TYR M 86 O THR M 102 SHEET 4 N 6 LEU M 33 GLN M 38 -1 N ALA M 34 O HIS M 89 SHEET 5 N 6 LYS M 45 TYR M 49 -1 O LEU M 47 N TRP M 35 SHEET 6 N 6 THR M 53 ARG M 54 -1 O THR M 53 N TYR M 49 SHEET 1 O 4 SER M 10 VAL M 13 0 SHEET 2 O 4 THR M 102 ILE M 106 1 O GLU M 105 N LEU M 11 SHEET 3 O 4 VAL M 85 GLN M 90 -1 N TYR M 86 O THR M 102 SHEET 4 O 4 THR M 97 PHE M 98 -1 O THR M 97 N GLN M 90 SHEET 1 P 4 SER M 114 PHE M 118 0 SHEET 2 P 4 THR M 129 PHE M 139 -1 O ASN M 137 N SER M 114 SHEET 3 P 4 TYR M 173 SER M 182 -1 O TYR M 173 N PHE M 139 SHEET 4 P 4 SER M 159 VAL M 163 -1 N GLN M 160 O THR M 178 SHEET 1 Q 4 ALA M 153 LEU M 154 0 SHEET 2 Q 4 ALA M 144 VAL M 150 -1 N VAL M 150 O ALA M 153 SHEET 3 Q 4 VAL M 191 HIS M 198 -1 O GLU M 195 N GLN M 147 SHEET 4 Q 4 VAL M 205 ASN M 210 -1 O VAL M 205 N VAL M 196 SHEET 1 R 4 GLN I 3 GLN I 6 0 SHEET 2 R 4 VAL I 18 SER I 25 -1 O SER I 25 N GLN I 3 SHEET 3 R 4 THR I 77 LEU I 82 -1 O MET I 80 N LEU I 20 SHEET 4 R 4 VAL I 67 ASP I 72 -1 N THR I 70 O TYR I 79 SHEET 1 S 6 GLU I 10 LYS I 12 0 SHEET 2 S 6 THR I 107 VAL I 111 1 O THR I 110 N LYS I 12 SHEET 3 S 6 ALA I 88 GLY I 95 -1 N ALA I 88 O VAL I 109 SHEET 4 S 6 MET I 34 GLN I 39 -1 N VAL I 37 O PHE I 91 SHEET 5 S 6 LEU I 45 ILE I 51 -1 O LEU I 48 N TRP I 36 SHEET 6 S 6 THR I 57 TYR I 59 -1 O GLN I 58 N TRP I 50 SHEET 1 T 4 GLU I 10 LYS I 12 0 SHEET 2 T 4 THR I 107 VAL I 111 1 O THR I 110 N LYS I 12 SHEET 3 T 4 ALA I 88 GLY I 95 -1 N ALA I 88 O VAL I 109 SHEET 4 T 4 SER I 100D TRP I 103 -1 O TYR I 102 N ARG I 94 SHEET 1 U 4 SER I 120 LEU I 124 0 SHEET 2 U 4 THR I 135 TYR I 145 -1 O LEU I 141 N PHE I 122 SHEET 3 U 4 TYR I 176 PRO I 185 -1 O TYR I 176 N TYR I 145 SHEET 4 U 4 VAL I 163 THR I 165 -1 N HIS I 164 O VAL I 181 SHEET 1 V 4 THR I 131 SER I 132 0 SHEET 2 V 4 THR I 135 TYR I 145 -1 O THR I 135 N SER I 132 SHEET 3 V 4 TYR I 176 PRO I 185 -1 O TYR I 176 N TYR I 145 SHEET 4 V 4 VAL I 169 LEU I 170 -1 N VAL I 169 O SER I 177 SHEET 1 W 3 THR I 151 TRP I 154 0 SHEET 2 W 3 TYR I 194 HIS I 200 -1 O ASN I 197 N SER I 153 SHEET 3 W 3 THR I 205 VAL I 211 -1 O THR I 205 N HIS I 200 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 4 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 5 CYS M 23 CYS M 88 1555 1555 2.06 SSBOND 6 CYS M 134 CYS M 194 1555 1555 2.03 SSBOND 7 CYS I 22 CYS I 92 1555 1555 2.04 SSBOND 8 CYS I 140 CYS I 196 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 1.65 CISPEP 2 ALA L 94 PRO L 95 0 -3.27 CISPEP 3 TYR L 140 PRO L 141 0 3.70 CISPEP 4 PHE H 146 PRO H 147 0 -5.39 CISPEP 5 GLU H 148 PRO H 149 0 1.94 CISPEP 6 SER M 7 PRO M 8 0 1.75 CISPEP 7 ALA M 94 PRO M 95 0 -5.25 CISPEP 8 TYR M 140 PRO M 141 0 4.05 CISPEP 9 PHE I 146 PRO I 147 0 -2.89 CISPEP 10 GLU I 148 PRO I 149 0 0.41 SITE 1 AC1 4 GLN L 37 LYS L 45 ALA L 81 ASP L 82 SITE 1 AC2 11 PHE H 166 PRO H 167 ALA H 168 SER H 177 SITE 2 AC2 11 LEU H 178 SER H 179 GLN L 160 SER L 162 SITE 3 AC2 11 SER L 176 SER L 177 THR L 178 SITE 1 AC3 6 GLY I 42 GLN I 43 GLN M 38 PRO M 40 SITE 2 AC3 6 GLY M 41 GLN M 42 CRYST1 59.954 68.634 72.401 78.67 78.93 86.18 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016679 -0.001113 -0.003111 0.00000 SCALE2 0.000000 0.014602 -0.002788 0.00000 SCALE3 0.000000 0.000000 0.014328 0.00000