HEADER OXIDOREDUCTASE 15-NOV-13 4NMI TITLE CRYSTAL STRUCTURE OF THE APO ECTOINE HYDROXYLASE ECTD FROM TITLE 2 SALIBACILLUS SALEXIGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ECTOINE HYDROXYLASE; COMPND 5 EC: 1.14.11.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIRGIBACILLUS SALEXIGENS; SOURCE 3 ORGANISM_COMMON: SALIBACILLUS SALEXIGENS; SOURCE 4 ORGANISM_TAXID: 61016 KEYWDS JELLY-ROLL OR CUPIN FOLD, METAL ION BINDING, IRON, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.WIDDERICH,A.HOEPPNER,S.H.SMITS,E.BREMER REVDAT 2 28-FEB-24 4NMI 1 SEQADV REVDAT 1 10-SEP-14 4NMI 0 JRNL AUTH N.WIDDERICH,A.HOPPNER,M.PITTELKOW,J.HEIDER,S.H.SMITS, JRNL AUTH 2 E.BREMER JRNL TITL BIOCHEMICAL PROPERTIES OF ECTOINE HYDROXYLASES FROM JRNL TITL 2 EXTREMOPHILES AND THEIR WIDER TAXONOMIC DISTRIBUTION AMONG JRNL TITL 3 MICROORGANISMS. JRNL REF PLOS ONE V. 9 93809 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24714029 JRNL DOI 10.1371/JOURNAL.PONE.0093809 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2448 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3300 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.798 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2316 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2159 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3130 ; 2.042 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4982 ; 0.978 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 5.529 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;36.033 ;24.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;14.404 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.674 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 330 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2642 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 546 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NMI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37155 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 5.0 AND 1.2 M AMMONIUM REMARK 280 SULFATE , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.44000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.22000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.83000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.61000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 133.05000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.44000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 53.22000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.61000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 79.83000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 133.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.22000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 409 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 196 REMARK 465 THR A 197 REMARK 465 PRO A 198 REMARK 465 ASP A 199 REMARK 465 ASN A 200 REMARK 465 ASN A 201 REMARK 465 TYR A 202 REMARK 465 LYS A 203 REMARK 465 GLU A 204 REMARK 465 SER A 205 REMARK 465 LEU A 206 REMARK 465 LYS A 207 REMARK 465 LYS A 208 REMARK 465 GLN A 209 REMARK 465 LYS A 210 REMARK 465 SER A 297 REMARK 465 ALA A 298 REMARK 465 VAL A 299 REMARK 465 ASN A 300 REMARK 465 SER A 301 REMARK 465 ALA A 302 REMARK 465 TRP A 303 REMARK 465 SER A 304 REMARK 465 HIS A 305 REMARK 465 PRO A 306 REMARK 465 GLN A 307 REMARK 465 PHE A 308 REMARK 465 GLU A 309 REMARK 465 LYS A 310 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 54 O HOH A 690 1.74 REMARK 500 O HOH A 459 O HOH A 641 1.76 REMARK 500 O HOH A 484 O HOH A 627 1.86 REMARK 500 OE1 GLN A 99 O HOH A 509 1.87 REMARK 500 O HOH A 481 O HOH A 644 1.88 REMARK 500 N GLU A 2 O HOH A 699 1.99 REMARK 500 O HOH A 580 O HOH A 741 2.01 REMARK 500 O HOH A 507 O HOH A 691 2.05 REMARK 500 OD2 ASP A 26 O HOH A 494 2.06 REMARK 500 CB ASP A 124 O HOH A 641 2.08 REMARK 500 O HOH A 577 O HOH A 744 2.09 REMARK 500 N LEU A 211 O HOH A 584 2.09 REMARK 500 O HOH A 669 O HOH A 686 2.11 REMARK 500 O HOH A 496 O HOH A 749 2.13 REMARK 500 O HOH A 508 O HOH A 691 2.13 REMARK 500 NH1 ARG A 118 O HOH A 628 2.14 REMARK 500 NE2 HIS A 248 O HOH A 749 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 665 O HOH A 665 10665 1.39 REMARK 500 O HOH A 580 O HOH A 701 10665 1.93 REMARK 500 O HOH A 686 O HOH A 700 10665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 131 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 160 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 162 CB - CG - CD ANGL. DEV. = 26.0 DEGREES REMARK 500 ARG A 162 CD - NE - CZ ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 162 NE - CZ - NH1 ANGL. DEV. = 15.9 DEGREES REMARK 500 ARG A 162 NE - CZ - NH2 ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 138 -0.48 74.75 REMARK 500 ARG A 162 42.47 -144.07 REMARK 500 VAL A 274 -160.20 -109.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EMR RELATED DB: PDB REMARK 900 RELATED ID: 4MHR RELATED DB: PDB REMARK 900 RELATED ID: 4MHU RELATED DB: PDB REMARK 900 RELATED ID: 4Q5O RELATED DB: PDB DBREF 4NMI A 1 300 UNP Q2TDY4 Q2TDY4_9BACI 1 300 SEQADV 4NMI SER A 301 UNP Q2TDY4 EXPRESSION TAG SEQADV 4NMI ALA A 302 UNP Q2TDY4 EXPRESSION TAG SEQADV 4NMI TRP A 303 UNP Q2TDY4 EXPRESSION TAG SEQADV 4NMI SER A 304 UNP Q2TDY4 EXPRESSION TAG SEQADV 4NMI HIS A 305 UNP Q2TDY4 EXPRESSION TAG SEQADV 4NMI PRO A 306 UNP Q2TDY4 EXPRESSION TAG SEQADV 4NMI GLN A 307 UNP Q2TDY4 EXPRESSION TAG SEQADV 4NMI PHE A 308 UNP Q2TDY4 EXPRESSION TAG SEQADV 4NMI GLU A 309 UNP Q2TDY4 EXPRESSION TAG SEQADV 4NMI LYS A 310 UNP Q2TDY4 EXPRESSION TAG SEQRES 1 A 310 MET GLU ASP LEU TYR PRO SER ARG GLN ASN ASN GLN PRO SEQRES 2 A 310 LYS ILE LEU LYS ARG LYS ASP PRO VAL ILE TYR THR ASP SEQRES 3 A 310 ARG SER LYS ASP ASN GLN ALA PRO ILE THR LYS GLU GLN SEQRES 4 A 310 LEU ASP SER TYR GLU LYS ASN GLY PHE LEU GLN ILE LYS SEQRES 5 A 310 ASN PHE PHE SER GLU ASP GLU VAL ILE ASP MET GLN LYS SEQRES 6 A 310 ALA ILE PHE GLU LEU GLN ASP SER ILE LYS ASP VAL ALA SEQRES 7 A 310 SER ASP LYS VAL ILE ARG GLU PRO GLU SER ASN ASP ILE SEQRES 8 A 310 ARG SER ILE PHE HIS VAL HIS GLN ASP ASP ASN TYR PHE SEQRES 9 A 310 GLN ASP VAL ALA ASN ASP LYS ARG ILE LEU ASP ILE VAL SEQRES 10 A 310 ARG HIS LEU LEU GLY SER ASP VAL TYR VAL HIS GLN SER SEQRES 11 A 310 ARG ILE ASN TYR LYS PRO GLY PHE LYS GLY LYS GLU PHE SEQRES 12 A 310 ASP TRP HIS SER ASP PHE GLU THR TRP HIS VAL GLU ASP SEQRES 13 A 310 GLY MET PRO ARG MET ARG ALA ILE SER VAL SER ILE ALA SEQRES 14 A 310 LEU SER ASP ASN TYR SER PHE ASN GLY PRO LEU MET LEU SEQRES 15 A 310 ILE PRO GLY SER HIS ASN TYR PHE VAL SER CYS VAL GLY SEQRES 16 A 310 GLU THR PRO ASP ASN ASN TYR LYS GLU SER LEU LYS LYS SEQRES 17 A 310 GLN LYS LEU GLY VAL PRO ASP GLU GLU SER LEU ARG GLU SEQRES 18 A 310 LEU THR ARG ILE GLY GLY GLY ILE SER VAL PRO THR GLY SEQRES 19 A 310 LYS ALA GLY SER VAL THR LEU PHE GLU SER ASN THR MET SEQRES 20 A 310 HIS GLY SER THR SER ASN ILE THR PRO TYR PRO ARG ASN SEQRES 21 A 310 ASN LEU PHE MET VAL TYR ASN SER VAL LYS ASN ARG LEU SEQRES 22 A 310 VAL GLU PRO PHE SER GLY GLY GLU LYS ARG PRO GLU TYR SEQRES 23 A 310 ILE ALA VAL ARG GLU LYS GLN PRO VAL TYR SER ALA VAL SEQRES 24 A 310 ASN SER ALA TRP SER HIS PRO GLN PHE GLU LYS FORMUL 2 HOH *349(H2 O) HELIX 1 1 ASP A 26 ALA A 33 5 8 HELIX 2 2 THR A 36 GLY A 47 1 12 HELIX 3 3 SER A 56 ILE A 74 1 19 HELIX 4 4 HIS A 96 ASP A 101 1 6 HELIX 5 5 ASP A 101 ASN A 109 1 9 HELIX 6 6 ASP A 110 GLY A 122 1 13 HELIX 7 7 SER A 147 GLY A 157 1 11 HELIX 8 8 GLY A 185 HIS A 187 5 3 HELIX 9 9 ASP A 215 GLY A 227 1 13 HELIX 10 10 LYS A 270 ARG A 272 5 3 SHEET 1 A 2 LYS A 14 LYS A 17 0 SHEET 2 A 2 TYR A 189 SER A 192 -1 O PHE A 190 N LEU A 16 SHEET 1 B 7 PHE A 48 ILE A 51 0 SHEET 2 B 7 VAL A 239 GLU A 243 -1 O VAL A 239 N ILE A 51 SHEET 3 B 7 ALA A 163 ALA A 169 -1 N SER A 165 O PHE A 242 SHEET 4 B 7 ASN A 261 SER A 268 -1 O LEU A 262 N ILE A 168 SHEET 5 B 7 VAL A 125 ASN A 133 -1 N TYR A 126 O ASN A 267 SHEET 6 B 7 ILE A 91 PHE A 95 -1 N ILE A 94 O ILE A 132 SHEET 7 B 7 VAL A 82 ARG A 84 -1 N ILE A 83 O ARG A 92 SHEET 1 C 3 PHE A 143 HIS A 146 0 SHEET 2 C 3 HIS A 248 SER A 250 -1 O SER A 250 N PHE A 143 SHEET 3 C 3 MET A 181 LEU A 182 -1 N MET A 181 O GLY A 249 CRYST1 102.897 102.897 159.660 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009718 0.005611 0.000000 0.00000 SCALE2 0.000000 0.011222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006263 0.00000