HEADER HYDROLASE/HYDROLASE INHIBITOR 15-NOV-13 4NMM TITLE CRYSTAL STRUCTURE OF A G12C ONCOGENIC VARIANT OF HUMAN KRAS BOUND TO A TITLE 2 NOVEL GDP COMPETITIVE COVALENT INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-169; COMPND 5 SYNONYM: K-RAS 2, KI-RAS, C-K-RAS, C-KI-RAS, GTPASE KRAS, N- COMPND 6 TERMINALLY PROCESSED; COMPND 7 EC: 3.6.5.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJEXPRESS401 KEYWDS SMALL GTPASE, GDP BOUND, ONCOGENIC MUTATION, COVALENT INHIBITOR, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.C.HUNTER,D.GURBANI,S.M.LIM,K.D.WESTOVER REVDAT 4 06-NOV-24 4NMM 1 REMARK REVDAT 3 20-SEP-23 4NMM 1 REMARK SEQADV LINK REVDAT 2 09-JUL-14 4NMM 1 JRNL REVDAT 1 04-JUN-14 4NMM 0 JRNL AUTH J.C.HUNTER,D.GURBANI,S.B.FICARRO,M.A.CARRASCO,S.M.LIM, JRNL AUTH 2 H.G.CHOI,T.XIE,J.A.MARTO,Z.CHEN,N.S.GRAY,K.D.WESTOVER JRNL TITL IN SITU SELECTIVITY PROFILING AND CRYSTAL STRUCTURE OF JRNL TITL 2 SML-8-73-1, AN ACTIVE SITE INHIBITOR OF ONCOGENIC K-RAS JRNL TITL 3 G12C. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 8895 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24889603 JRNL DOI 10.1073/PNAS.1404639111 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 615 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1357 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.46000 REMARK 3 B22 (A**2) : 3.17000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.717 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1419 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1332 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1921 ; 1.364 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3072 ; 0.768 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 171 ; 5.011 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;36.225 ;24.493 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 255 ;12.006 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.314 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 213 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1589 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 318 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 683 ; 2.152 ; 2.293 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 680 ; 2.108 ; 2.289 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 851 ; 2.963 ; 3.430 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 851 ; 2.974 ; 3.432 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 736 ; 3.257 ; 2.770 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 734 ; 3.259 ; 2.771 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1068 ; 5.140 ; 4.005 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1703 ; 6.816 ;20.084 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1658 ; 6.723 ;19.749 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NMM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083392. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12363 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4690 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.88300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.036 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4EPV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MMT PH4.0, 28% PEG 6,000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.54400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.57950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.01100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.57950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.54400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.01100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 123 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 117 30.58 71.10 REMARK 500 ARG A 149 -1.97 74.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE UNREACTED INHIBITOR IS 5'-O-[(S)-{[(S)-{2-[(CHLOROCARBONYL) REMARK 600 AMINO]ETHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]GUANOSINE, REMARK 600 THE CHLORO-ACETLY GROUP REACTS WITH CYS A12 RESIDUE ON THE PROTEIN REMARK 600 TO FORM A THIO-ETHER LINKAGE BETWEEN C13 ATOM OF Y9Z AND SG ATOM OF REMARK 600 CYS A12 WITH THE CHLORINE ACTING AS A LEAVING GROUP. LIGAND Y9Z REMARK 600 REPRESENT THE REACTED/BOUND FORM OF THE INHIBITOR. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 Y9Z A 202 O8 94.6 REMARK 620 3 HOH A 306 O 78.4 85.7 REMARK 620 4 HOH A 424 O 91.9 171.7 90.5 REMARK 620 5 HOH A 425 O 94.4 105.1 167.6 79.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y9Z A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LDJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A GDP-BOUND G12C ONCOGENIC MUTANT OF HUMAN REMARK 900 GTPASE KRAS REMARK 900 RELATED ID: 4OBE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GDP-BOUND HUMAN KRAS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE MATCHES UNIPROT ENTRY P01116, ISOFORM 2B WITH REMARK 999 IDENTIFIER P01116-2 DBREF 4NMM A 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 4NMM GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 4NMM CYS A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS HET MG A 201 1 HET Y9Z A 202 34 HETNAM MG MAGNESIUM ION HETNAM Y9Z 5'-O-[(S)-{[(S)-[2-(ACETYLAMINO)ETHOXY](HYDROXY) HETNAM 2 Y9Z PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]GUANOSINE FORMUL 2 MG MG 2+ FORMUL 3 Y9Z C14 H22 N6 O12 P2 FORMUL 4 HOH *125(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 TYR A 64 GLY A 75 1 12 HELIX 3 3 ASN A 86 ASP A 105 1 20 HELIX 4 4 ASP A 126 GLY A 138 1 13 HELIX 5 5 GLY A 151 GLU A 168 1 18 SHEET 1 A 6 ASP A 38 ILE A 46 0 SHEET 2 A 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40 SHEET 3 A 6 GLU A 3 VAL A 9 1 N LEU A 6 O LEU A 56 SHEET 4 A 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK SG BCYS A 12 C13 Y9Z A 202 1555 1555 1.80 LINK OG SER A 17 MG MG A 201 1555 1555 2.18 LINK MG MG A 201 O8 Y9Z A 202 1555 1555 1.86 LINK MG MG A 201 O HOH A 306 1555 1555 2.37 LINK MG MG A 201 O HOH A 424 1555 1555 2.25 LINK MG MG A 201 O HOH A 425 1555 1555 2.34 SITE 1 AC1 6 SER A 17 TYR A 32 Y9Z A 202 HOH A 306 SITE 2 AC1 6 HOH A 424 HOH A 425 SITE 1 AC2 26 CYS A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC2 26 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC2 26 VAL A 29 ASP A 30 TYR A 32 PRO A 34 SITE 4 AC2 26 ALA A 59 ASN A 116 LYS A 117 ASP A 119 SITE 5 AC2 26 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 6 AC2 26 MG A 201 HOH A 306 HOH A 336 HOH A 375 SITE 7 AC2 26 HOH A 411 HOH A 425 CRYST1 39.088 42.022 91.159 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025583 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010970 0.00000 TER 1361 LYS A 169 HETATM 1362 MG MG A 201 52.015 33.604 15.308 1.00 37.83 MG HETATM 1363 N Y9Z A 202 39.595 34.090 11.767 1.00 25.30 N HETATM 1364 C Y9Z A 202 40.765 34.642 11.469 1.00 24.43 C HETATM 1365 O Y9Z A 202 40.876 35.626 10.677 1.00 24.80 O HETATM 1366 P Y9Z A 202 47.906 32.902 14.876 1.00 26.91 P HETATM 1367 P1 Y9Z A 202 49.480 34.891 16.242 1.00 23.36 P HETATM 1368 C1 Y9Z A 202 39.476 33.028 12.609 1.00 25.10 C HETATM 1369 N1 Y9Z A 202 38.260 32.512 12.807 1.00 28.39 N HETATM 1370 O1 Y9Z A 202 43.783 29.688 13.281 1.00 26.86 O HETATM 1371 C2 Y9Z A 202 41.723 32.975 13.085 1.00 25.80 C HETATM 1372 N2 Y9Z A 202 40.485 32.493 13.310 1.00 24.56 N HETATM 1373 O2 Y9Z A 202 44.187 29.214 15.891 1.00 25.63 O HETATM 1374 C3 Y9Z A 202 41.930 34.104 12.161 1.00 21.75 C HETATM 1375 N3 Y9Z A 202 43.231 34.406 12.170 1.00 23.67 N HETATM 1376 O3 Y9Z A 202 46.373 32.592 15.096 1.00 26.87 O HETATM 1377 C4 Y9Z A 202 43.830 33.540 13.021 1.00 23.60 C HETATM 1378 N4 Y9Z A 202 42.934 32.682 13.515 1.00 26.25 N HETATM 1379 O4 Y9Z A 202 48.104 34.099 15.978 1.00 29.61 O HETATM 1380 C5 Y9Z A 202 43.180 31.629 14.505 1.00 25.93 C HETATM 1381 N5 Y9Z A 202 53.133 34.820 18.816 0.50 28.46 N HETATM 1382 O5 Y9Z A 202 49.981 34.397 17.633 1.00 28.96 O HETATM 1383 C6 Y9Z A 202 44.313 30.733 14.076 1.00 26.59 C HETATM 1384 O6 Y9Z A 202 52.486 36.920 19.399 0.50 20.70 O HETATM 1385 C7 Y9Z A 202 44.910 30.300 15.395 1.00 28.54 C HETATM 1386 O7 Y9Z A 202 49.140 36.419 16.422 1.00 20.83 O1- HETATM 1387 C8 Y9Z A 202 44.635 31.489 16.301 1.00 27.51 C HETATM 1388 O8 Y9Z A 202 50.508 34.689 15.224 1.00 22.80 O HETATM 1389 C9 Y9Z A 202 45.892 32.342 16.423 1.00 27.41 C HETATM 1390 O9 Y9Z A 202 48.144 33.437 13.423 1.00 28.24 O1- HETATM 1391 C10 Y9Z A 202 51.247 33.733 17.724 0.50 27.79 C HETATM 1392 O10 Y9Z A 202 48.769 31.786 15.250 1.00 26.34 O HETATM 1393 C11 Y9Z A 202 52.453 34.639 17.537 0.50 26.93 C HETATM 1394 O11 Y9Z A 202 43.560 32.251 15.719 1.00 26.66 O HETATM 1395 C12 Y9Z A 202 52.922 35.831 19.679 0.50 27.12 C HETATM 1396 C13 Y9Z A 202 53.132 35.472 21.147 0.50 29.02 C HETATM 1397 O HOH A 301 58.591 40.143 18.744 1.00 20.74 O HETATM 1398 O HOH A 302 46.969 31.682 7.222 1.00 21.67 O HETATM 1399 O HOH A 303 61.317 62.249 -0.761 1.00 19.10 O HETATM 1400 O HOH A 304 42.398 39.944 0.270 1.00 22.01 O HETATM 1401 O HOH A 305 49.928 55.138 8.648 1.00 21.85 O HETATM 1402 O HOH A 306 53.244 35.577 14.844 1.00 28.30 O HETATM 1403 O HOH A 307 39.162 45.766 3.023 1.00 23.37 O HETATM 1404 O HOH A 308 56.838 57.580 -2.342 1.00 20.95 O HETATM 1405 O HOH A 309 40.786 36.006 19.275 1.00 23.92 O HETATM 1406 O HOH A 310 37.431 39.905 24.865 1.00 26.16 O HETATM 1407 O HOH A 311 54.077 41.927 18.580 1.00 23.66 O HETATM 1408 O HOH A 312 64.509 48.720 -1.832 1.00 29.81 O HETATM 1409 O HOH A 313 30.718 52.848 12.600 1.00 28.11 O HETATM 1410 O HOH A 314 55.984 41.830 -11.843 1.00 24.17 O HETATM 1411 O HOH A 315 50.822 39.194 23.945 1.00 29.78 O HETATM 1412 O HOH A 316 49.506 58.833 17.611 1.00 27.67 O HETATM 1413 O HOH A 317 38.091 56.757 11.295 1.00 26.27 O HETATM 1414 O HOH A 318 62.063 44.770 10.460 1.00 26.01 O HETATM 1415 O HOH A 319 47.062 43.453 19.668 1.00 19.63 O HETATM 1416 O HOH A 320 29.898 50.124 12.658 1.00 25.61 O HETATM 1417 O HOH A 321 65.693 41.653 15.391 1.00 23.61 O HETATM 1418 O HOH A 322 34.526 31.558 10.388 1.00 30.04 O HETATM 1419 O HOH A 323 62.339 54.049 -2.332 1.00 37.11 O HETATM 1420 O HOH A 324 50.663 54.647 -3.522 1.00 26.04 O HETATM 1421 O HOH A 325 52.274 57.889 5.845 1.00 26.98 O HETATM 1422 O HOH A 326 61.172 50.699 0.745 1.00 28.89 O HETATM 1423 O HOH A 327 54.928 46.045 -12.531 1.00 26.31 O HETATM 1424 O HOH A 328 69.315 43.413 24.852 1.00 29.57 O HETATM 1425 O HOH A 329 53.185 57.868 8.236 1.00 31.60 O HETATM 1426 O HOH A 330 56.418 53.531 -4.948 1.00 26.79 O HETATM 1427 O HOH A 331 38.656 33.009 18.414 1.00 26.97 O HETATM 1428 O HOH A 332 38.395 49.608 5.858 1.00 28.61 O HETATM 1429 O HOH A 333 59.049 56.390 10.525 1.00 26.37 O HETATM 1430 O HOH A 334 69.386 49.492 15.168 1.00 26.39 O HETATM 1431 O HOH A 335 64.844 42.957 -8.363 1.00 31.36 O HETATM 1432 O HOH A 336 48.999 31.810 18.630 1.00 29.47 O HETATM 1433 O HOH A 337 50.225 41.423 -6.601 1.00 35.52 O HETATM 1434 O HOH A 338 66.185 55.099 16.679 1.00 30.73 O HETATM 1435 O HOH A 339 50.962 56.125 -1.292 1.00 27.68 O HETATM 1436 O HOH A 340 35.713 41.476 26.534 1.00 29.39 O HETATM 1437 O HOH A 341 61.722 58.251 21.537 1.00 25.28 O HETATM 1438 O HOH A 342 47.393 54.948 2.018 1.00 32.25 O HETATM 1439 O HOH A 343 69.945 44.686 -7.693 1.00 41.93 O HETATM 1440 O HOH A 344 60.537 53.958 4.275 1.00 30.19 O HETATM 1441 O HOH A 345 60.006 51.430 -7.318 1.00 32.46 O HETATM 1442 O HOH A 346 43.642 47.994 -1.302 1.00 26.14 O HETATM 1443 O HOH A 347 38.061 52.259 8.600 1.00 35.36 O HETATM 1444 O HOH A 348 44.630 46.469 29.093 1.00 48.47 O HETATM 1445 O HOH A 349 54.374 57.739 -3.827 1.00 31.32 O HETATM 1446 O HOH A 350 47.969 30.799 20.481 1.00 37.84 O HETATM 1447 O HOH A 351 46.461 57.764 3.717 1.00 31.19 O HETATM 1448 O HOH A 352 37.475 47.331 6.952 1.00 24.40 O HETATM 1449 O HOH A 353 37.871 44.525 5.013 1.00 29.53 O HETATM 1450 O HOH A 354 35.884 51.389 8.887 1.00 30.71 O HETATM 1451 O HOH A 355 52.982 48.876 -14.092 1.00 31.14 O HETATM 1452 O HOH A 356 60.473 43.639 8.405 1.00 22.07 O HETATM 1453 O HOH A 357 58.790 53.372 -2.421 1.00 28.93 O HETATM 1454 O HOH A 358 38.041 61.328 19.072 1.00 28.05 O HETATM 1455 O HOH A 359 43.018 37.312 20.016 1.00 33.11 O HETATM 1456 O HOH A 360 51.155 28.571 -1.829 1.00 40.47 O HETATM 1457 O HOH A 361 35.151 37.316 5.910 1.00 33.40 O HETATM 1458 O HOH A 362 61.824 53.548 9.003 1.00 32.61 O HETATM 1459 O HOH A 363 59.396 54.172 7.808 1.00 32.18 O HETATM 1460 O HOH A 364 60.286 48.540 -7.928 1.00 33.00 O HETATM 1461 O HOH A 365 47.492 47.247 -6.533 1.00 34.98 O HETATM 1462 O HOH A 366 33.855 32.399 18.592 1.00 34.35 O HETATM 1463 O HOH A 367 59.083 62.884 14.125 1.00 40.31 O HETATM 1464 O HOH A 368 56.739 44.577 21.629 1.00 33.47 O HETATM 1465 O HOH A 369 47.135 36.279 -3.956 1.00 41.92 O HETATM 1466 O HOH A 370 61.857 41.275 7.548 1.00 42.90 O HETATM 1467 O HOH A 371 64.823 43.919 -4.247 1.00 35.10 O HETATM 1468 O HOH A 372 39.224 49.111 3.158 1.00 27.90 O HETATM 1469 O HOH A 373 47.168 40.587 25.687 1.00 28.92 O HETATM 1470 O HOH A 374 48.245 55.831 -1.608 1.00 47.79 O HETATM 1471 O HOH A 375 40.559 32.229 16.455 1.00 35.09 O HETATM 1472 O HOH A 376 67.027 59.112 17.404 1.00 45.16 O HETATM 1473 O HOH A 377 49.122 39.953 -2.249 1.00 37.08 O HETATM 1474 O HOH A 378 58.129 40.828 -12.911 1.00 38.61 O HETATM 1475 O HOH A 379 64.659 49.523 6.340 1.00 36.91 O HETATM 1476 O HOH A 380 29.377 40.855 15.286 1.00 29.75 O HETATM 1477 O HOH A 381 63.957 53.857 12.908 1.00 23.95 O HETATM 1478 O HOH A 382 60.544 32.121 5.483 1.00 45.74 O HETATM 1479 O HOH A 383 45.273 46.743 -4.872 1.00 43.12 O HETATM 1480 O HOH A 384 42.101 60.725 11.323 1.00 31.98 O HETATM 1481 O HOH A 385 61.829 66.851 2.175 1.00 49.85 O HETATM 1482 O HOH A 386 34.818 34.532 20.248 1.00 34.13 O HETATM 1483 O HOH A 387 35.451 46.008 23.648 1.00 38.08 O HETATM 1484 O HOH A 388 37.131 42.370 29.017 1.00 48.11 O HETATM 1485 O HOH A 389 39.882 46.653 30.629 1.00 44.34 O HETATM 1486 O HOH A 390 33.337 48.174 20.972 1.00 36.29 O HETATM 1487 O HOH A 391 38.763 54.392 10.729 1.00 31.07 O HETATM 1488 O HOH A 392 56.008 44.024 18.893 1.00 30.80 O HETATM 1489 O HOH A 393 71.514 44.340 24.271 1.00 34.77 O HETATM 1490 O HOH A 394 52.500 58.033 -2.158 1.00 37.41 O HETATM 1491 O HOH A 395 44.714 51.292 0.587 1.00 39.66 O HETATM 1492 O HOH A 396 58.109 35.796 -5.571 1.00 42.23 O HETATM 1493 O HOH A 397 38.800 62.606 17.125 1.00 44.97 O HETATM 1494 O HOH A 398 45.092 54.014 1.436 1.00 38.74 O HETATM 1495 O HOH A 399 48.542 47.033 -9.726 1.00 32.02 O HETATM 1496 O HOH A 400 39.551 32.561 0.550 1.00 45.33 O HETATM 1497 O HOH A 401 66.370 46.996 24.396 1.00 39.50 O HETATM 1498 O HOH A 402 29.175 54.549 12.825 1.00 48.07 O HETATM 1499 O HOH A 403 34.905 54.945 20.777 1.00 46.72 O HETATM 1500 O HOH A 404 48.153 54.480 -4.403 1.00 36.76 O HETATM 1501 O HOH A 405 38.309 35.413 24.615 1.00 43.45 O HETATM 1502 O HOH A 406 35.959 36.198 23.155 1.00 44.69 O HETATM 1503 O HOH A 407 55.505 36.136 -5.904 1.00 40.77 O HETATM 1504 O HOH A 408 34.722 42.468 30.528 1.00 44.56 O HETATM 1505 O HOH A 409 45.975 49.349 -8.538 1.00 41.45 O HETATM 1506 O HOH A 410 40.353 35.272 21.797 1.00 39.90 O HETATM 1507 O HOH A 411 53.229 39.630 20.508 1.00 34.54 O HETATM 1508 O HOH A 412 45.077 39.185 24.411 1.00 35.15 O HETATM 1509 O HOH A 413 44.199 21.156 10.645 1.00 48.57 O HETATM 1510 O HOH A 414 63.606 48.665 2.732 1.00 44.75 O HETATM 1511 O HOH A 415 50.783 57.511 9.738 1.00 35.56 O HETATM 1512 O HOH A 416 40.572 58.325 10.422 1.00 38.17 O HETATM 1513 O HOH A 417 38.677 53.781 20.542 1.00 30.49 O HETATM 1514 O HOH A 418 50.426 42.108 23.940 1.00 35.13 O HETATM 1515 O HOH A 419 62.708 54.667 3.225 1.00 38.48 O HETATM 1516 O HOH A 420 52.628 44.544 -13.713 1.00 39.44 O HETATM 1517 O HOH A 421 49.788 42.533 26.865 1.00 53.45 O HETATM 1518 O HOH A 422 52.720 66.359 17.749 1.00 42.82 O HETATM 1519 O HOH A 423 35.559 26.076 8.940 1.00 44.39 O HETATM 1520 O HOH A 424 53.930 32.470 15.664 1.00 32.87 O HETATM 1521 O HOH A 425 51.185 31.427 15.527 1.00 27.31 O CONECT 96 1396 CONECT 126 1362 CONECT 1362 126 1388 1402 1520 CONECT 1362 1521 CONECT 1363 1364 1368 CONECT 1364 1363 1365 1374 CONECT 1365 1364 CONECT 1366 1376 1379 1390 1392 CONECT 1367 1379 1382 1386 1388 CONECT 1368 1363 1369 1372 CONECT 1369 1368 CONECT 1370 1383 CONECT 1371 1372 1374 1378 CONECT 1372 1368 1371 CONECT 1373 1385 CONECT 1374 1364 1371 1375 CONECT 1375 1374 1377 CONECT 1376 1366 1389 CONECT 1377 1375 1378 CONECT 1378 1371 1377 1380 CONECT 1379 1366 1367 CONECT 1380 1378 1383 1394 CONECT 1381 1393 1395 CONECT 1382 1367 1391 CONECT 1383 1370 1380 1385 CONECT 1384 1395 CONECT 1385 1373 1383 1387 CONECT 1386 1367 CONECT 1387 1385 1389 1394 CONECT 1388 1362 1367 CONECT 1389 1376 1387 CONECT 1390 1366 CONECT 1391 1382 1393 CONECT 1392 1366 CONECT 1393 1381 1391 CONECT 1394 1380 1387 CONECT 1395 1381 1384 1396 CONECT 1396 96 1395 CONECT 1402 1362 CONECT 1520 1362 CONECT 1521 1362 MASTER 318 0 2 5 6 0 9 6 1517 1 41 14 END