HEADER MEMBRANE PROTEIN 21-NOV-13 4NPK TITLE EXTENDED-SYNAPTOTAGMIN 2, C2A- AND C2B-DOMAINS, CALCIUM BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTENDED SYNAPTOTAGMIN-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2A AND C2B DOMAINS; COMPND 5 SYNONYM: E-SYT2, CHR2SYT; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESYT2, EXTENDED-SYNAPTOTAGMIN 2, FAM62B, KIAA1228; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CALCIUM/PHOSPHOLIPID BINDING PROTEIN, C2 DOMAIN, ER TO PLASMA KEYWDS 2 MEMBRANE, MEMBRANE TRAFFIC, PROTEIN TARGETING, PLASMA MEMBRANE, KEYWDS 3 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.R.TOMCHICK,J.RIZO,J.XU REVDAT 4 20-SEP-23 4NPK 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 4NPK 1 REMARK REVDAT 2 19-MAR-14 4NPK 1 JRNL REVDAT 1 29-JAN-14 4NPK 0 JRNL AUTH J.XU,T.BACAJ,A.ZHOU,D.R.TOMCHICK,T.C.SUDHOF,J.RIZO JRNL TITL STRUCTURE AND CA(2+)-BINDING PROPERTIES OF THE TANDEM C2 JRNL TITL 2 DOMAINS OF E-SYT2. JRNL REF STRUCTURE V. 22 269 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24373768 JRNL DOI 10.1016/J.STR.2013.11.011 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.W.MIN,W.P.CHANG,T.C.SUDHOF REMARK 1 TITL E-SYTS, A FAMILY OF MEMBRANOUS CA2+-SENSOR PROTEINS WITH REMARK 1 TITL 2 MULTIPLE C2 DOMAINS. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 104 3823 2007 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 17360437 REMARK 1 DOI 10.1073/PNAS.0611725104 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 12224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9879 - 4.0487 0.99 3360 171 0.1855 0.2317 REMARK 3 2 4.0487 - 3.2149 0.99 3300 163 0.2542 0.3577 REMARK 3 3 3.2149 - 2.8089 0.97 3178 177 0.3237 0.3791 REMARK 3 4 2.8089 - 2.5523 0.54 1782 93 0.3158 0.4170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 133.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2240 REMARK 3 ANGLE : 1.205 3003 REMARK 3 CHIRALITY : 0.045 337 REMARK 3 PLANARITY : 0.008 388 REMARK 3 DIHEDRAL : 13.432 853 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 380 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1354 1.7188 31.5940 REMARK 3 T TENSOR REMARK 3 T11: 0.8671 T22: 0.9540 REMARK 3 T33: 0.8068 T12: 0.0330 REMARK 3 T13: -0.0321 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 1.5728 L22: 1.0744 REMARK 3 L33: 0.2878 L12: -0.9747 REMARK 3 L13: -0.1464 L23: 0.2566 REMARK 3 S TENSOR REMARK 3 S11: -0.3274 S12: -0.4386 S13: -0.2296 REMARK 3 S21: -0.3306 S22: 0.0453 S23: -0.2494 REMARK 3 S31: 0.3607 S32: 0.1333 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 440 THROUGH 482 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9048 11.6415 30.7810 REMARK 3 T TENSOR REMARK 3 T11: 0.8112 T22: 0.9015 REMARK 3 T33: 0.9302 T12: -0.0410 REMARK 3 T13: 0.0099 T23: -0.1001 REMARK 3 L TENSOR REMARK 3 L11: 1.0535 L22: 1.4805 REMARK 3 L33: 1.3591 L12: 0.4300 REMARK 3 L13: -1.0225 L23: -1.3755 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: -0.1640 S13: 0.3122 REMARK 3 S21: -0.1697 S22: 0.4304 S23: 0.0335 REMARK 3 S31: 0.0353 S32: -0.2771 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 483 THROUGH 546 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0138 9.5706 24.7056 REMARK 3 T TENSOR REMARK 3 T11: 0.9176 T22: 1.0092 REMARK 3 T33: 0.9484 T12: 0.0581 REMARK 3 T13: -0.0022 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.1798 L22: -0.3902 REMARK 3 L33: 1.5907 L12: -0.7921 REMARK 3 L13: -0.6229 L23: 0.3067 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: -0.5348 S13: 0.2015 REMARK 3 S21: -0.1589 S22: -0.0453 S23: -0.1465 REMARK 3 S31: 0.1398 S32: 0.3056 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 547 THROUGH 569 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2099 14.6566 -4.2628 REMARK 3 T TENSOR REMARK 3 T11: 1.3310 T22: 1.4708 REMARK 3 T33: 1.2516 T12: 0.0335 REMARK 3 T13: 0.1158 T23: 0.1257 REMARK 3 L TENSOR REMARK 3 L11: 0.2228 L22: 0.2089 REMARK 3 L33: 0.1114 L12: -0.0523 REMARK 3 L13: -0.0117 L23: -0.2852 REMARK 3 S TENSOR REMARK 3 S11: 0.3705 S12: 1.0399 S13: 0.1261 REMARK 3 S21: -0.1111 S22: 0.0319 S23: 0.1056 REMARK 3 S31: 0.9798 S32: 0.2484 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 570 THROUGH 592 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4152 19.9059 1.5795 REMARK 3 T TENSOR REMARK 3 T11: 0.9665 T22: 1.1286 REMARK 3 T33: 1.2253 T12: 0.3291 REMARK 3 T13: 0.1537 T23: 0.3349 REMARK 3 L TENSOR REMARK 3 L11: -0.0191 L22: -0.2351 REMARK 3 L33: 0.5990 L12: -0.4922 REMARK 3 L13: 0.1058 L23: -0.5885 REMARK 3 S TENSOR REMARK 3 S11: 0.8654 S12: 0.1329 S13: 0.8660 REMARK 3 S21: 0.7134 S22: -0.3469 S23: 0.4012 REMARK 3 S31: -0.2849 S32: -1.1115 S33: 0.0746 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 593 THROUGH 611 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4488 8.6333 -0.1475 REMARK 3 T TENSOR REMARK 3 T11: 0.9617 T22: 0.9316 REMARK 3 T33: 0.9995 T12: -0.1412 REMARK 3 T13: 0.1483 T23: -0.1476 REMARK 3 L TENSOR REMARK 3 L11: 0.5337 L22: 0.0159 REMARK 3 L33: 0.3148 L12: 0.0910 REMARK 3 L13: -0.4890 L23: -0.1279 REMARK 3 S TENSOR REMARK 3 S11: 0.4771 S12: 0.3577 S13: 0.0213 REMARK 3 S21: -0.0555 S22: -0.0107 S23: -0.2319 REMARK 3 S31: 0.7411 S32: 0.1086 S33: -0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 612 THROUGH 659 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4249 15.3829 2.9080 REMARK 3 T TENSOR REMARK 3 T11: 1.0906 T22: 0.7667 REMARK 3 T33: 0.9470 T12: 0.0649 REMARK 3 T13: 0.0570 T23: 0.1189 REMARK 3 L TENSOR REMARK 3 L11: 1.9857 L22: -1.1547 REMARK 3 L33: 0.9113 L12: -0.7664 REMARK 3 L13: -1.6164 L23: 0.0371 REMARK 3 S TENSOR REMARK 3 S11: 0.4438 S12: 0.1544 S13: 0.3472 REMARK 3 S21: -0.0489 S22: -0.0937 S23: -0.0400 REMARK 3 S31: -0.2700 S32: 0.2339 S33: 0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED REFERENCE MODEL RESTRAINTS. REMARK 3 REFERENCE MODEL WAS REMARK 4 REMARK 4 4NPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12318 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 38.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.27600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4NPJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG 8000, 0.1 M HEPES PH 8.0, 0.125 REMARK 280 M NACL, 2.5% GLYCEROL, 0.02 M CACL2, 0.5 MM TCEP, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.92000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.59700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.92000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.59700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 362 REMARK 465 ASN A 363 REMARK 465 ARG A 364 REMARK 465 ILE A 365 REMARK 465 THR A 366 REMARK 465 VAL A 367 REMARK 465 PRO A 368 REMARK 465 LEU A 369 REMARK 465 VAL A 370 REMARK 465 SER A 371 REMARK 465 GLU A 372 REMARK 465 VAL A 373 REMARK 465 GLN A 374 REMARK 465 ILE A 375 REMARK 465 ALA A 376 REMARK 465 GLN A 377 REMARK 465 LEU A 378 REMARK 465 ARG A 379 REMARK 465 LYS A 526 REMARK 465 ASP A 527 REMARK 465 GLN A 528 REMARK 465 ALA A 529 REMARK 465 ASN A 530 REMARK 465 ASP A 531 REMARK 465 GLY A 551 REMARK 465 LYS A 552 REMARK 465 LYS A 553 REMARK 465 ILE A 554 REMARK 465 SER A 555 REMARK 465 ARG A 660 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 405 16.22 55.61 REMARK 500 LYS A 411 -141.66 -87.44 REMARK 500 GLU A 448 45.47 -70.27 REMARK 500 ASP A 464 -131.19 -105.24 REMARK 500 ARG A 483 -46.95 66.79 REMARK 500 LYS A 523 66.66 84.69 REMARK 500 ASP A 543 -70.06 -82.60 REMARK 500 GLN A 610 -18.81 -35.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 400 O REMARK 620 2 ASP A 401 OD2 84.7 REMARK 620 3 ASP A 460 OD2 109.6 65.6 REMARK 620 4 ASP A 462 OD1 154.9 70.8 55.3 REMARK 620 5 ASP A 462 OD2 151.2 123.3 80.0 52.4 REMARK 620 6 ASP A 467 OD2 84.3 162.5 105.6 117.8 66.9 REMARK 620 7 HOH A 904 O 94.2 65.1 122.1 81.0 103.6 129.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 401 OD1 REMARK 620 2 ASP A 401 OD2 52.6 REMARK 620 3 ASP A 413 OD2 81.6 134.1 REMARK 620 4 ASP A 460 OD1 97.1 97.4 84.6 REMARK 620 5 ASP A 460 OD2 91.6 56.9 132.3 49.3 REMARK 620 6 GLU A 461 O 153.2 154.1 71.9 83.5 108.3 REMARK 620 7 ASP A 462 OD1 122.7 70.1 155.3 87.6 50.6 84.0 REMARK 620 8 HOH A 903 O 67.8 96.8 63.2 145.6 153.6 96.8 126.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 803 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 462 O REMARK 620 2 ASP A 464 O 100.9 REMARK 620 3 ASP A 466 OD1 92.4 88.5 REMARK 620 4 HOH A 901 O 152.2 82.7 115.3 REMARK 620 5 HOH A 902 O 76.4 152.6 118.8 87.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NPJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH NO BOUND CA2+. DBREF 4NPK A 363 660 UNP A0FGR8 ESYT2_HUMAN 363 660 SEQADV 4NPK GLY A 362 UNP A0FGR8 EXPRESSION TAG SEQADV 4NPK VAL A 512 UNP A0FGR8 ALA 512 ENGINEERED MUTATION SEQRES 1 A 299 GLY ASN ARG ILE THR VAL PRO LEU VAL SER GLU VAL GLN SEQRES 2 A 299 ILE ALA GLN LEU ARG PHE PRO VAL PRO LYS GLY VAL LEU SEQRES 3 A 299 ARG ILE HIS PHE ILE GLU ALA GLN ASP LEU GLN GLY LYS SEQRES 4 A 299 ASP THR TYR LEU LYS GLY LEU VAL LYS GLY LYS SER ASP SEQRES 5 A 299 PRO TYR GLY ILE ILE ARG VAL GLY ASN GLN ILE PHE GLN SEQRES 6 A 299 SER ARG VAL ILE LYS GLU ASN LEU SER PRO LYS TRP ASN SEQRES 7 A 299 GLU VAL TYR GLU ALA LEU VAL TYR GLU HIS PRO GLY GLN SEQRES 8 A 299 GLU LEU GLU ILE GLU LEU PHE ASP GLU ASP PRO ASP LYS SEQRES 9 A 299 ASP ASP PHE LEU GLY SER LEU MET ILE ASP LEU ILE GLU SEQRES 10 A 299 VAL GLU LYS GLU ARG LEU LEU ASP GLU TRP PHE THR LEU SEQRES 11 A 299 ASP GLU VAL PRO LYS GLY LYS LEU HIS LEU ARG LEU GLU SEQRES 12 A 299 TRP LEU THR LEU MET PRO ASN VAL SER ASN LEU ASP LYS SEQRES 13 A 299 VAL LEU THR ASP ILE LYS ALA ASP LYS ASP GLN ALA ASN SEQRES 14 A 299 ASP GLY LEU SER SER ALA LEU LEU ILE LEU TYR LEU ASP SEQRES 15 A 299 SER ALA ARG ASN LEU PRO SER GLY LYS LYS ILE SER SER SEQRES 16 A 299 ASN PRO ASN PRO VAL VAL GLN MET SER VAL GLY HIS LYS SEQRES 17 A 299 ALA GLN GLU SER LYS ILE ARG TYR LYS THR ASN GLU PRO SEQRES 18 A 299 VAL TRP GLU GLU ASN PHE THR PHE PHE ILE HIS ASN PRO SEQRES 19 A 299 LYS ARG GLN ASP LEU GLU VAL GLU VAL ARG ASP GLU GLN SEQRES 20 A 299 HIS GLN CYS SER LEU GLY ASN LEU LYS VAL PRO LEU SER SEQRES 21 A 299 GLN LEU LEU THR SER GLU ASP MET THR VAL SER GLN ARG SEQRES 22 A 299 PHE GLN LEU SER ASN SER GLY PRO ASN SER THR ILE LYS SEQRES 23 A 299 MET LYS ILE ALA LEU ARG VAL LEU HIS LEU GLU LYS ARG HET CA A 801 1 HET CA A 802 1 HET CA A 803 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *4(H2 O) HELIX 1 1 LEU A 404 LEU A 407 5 4 HELIX 2 2 LEU A 476 ARG A 483 1 8 HELIX 3 3 ASN A 514 LYS A 523 1 10 HELIX 4 4 SER A 621 ASP A 628 5 8 SHEET 1 A 6 LYS A 437 VAL A 446 0 SHEET 2 A 6 GLY A 385 GLN A 395 -1 N ILE A 389 O TYR A 442 SHEET 3 A 6 LYS A 498 MET A 509 -1 O HIS A 500 N GLU A 393 SHEET 4 A 6 THR A 645 HIS A 656 -1 O HIS A 656 N THR A 507 SHEET 5 A 6 ALA A 536 ARG A 546 -1 N TYR A 541 O LYS A 649 SHEET 6 A 6 VAL A 583 ILE A 592 -1 O PHE A 590 N LEU A 538 SHEET 1 B 4 LEU A 484 THR A 490 0 SHEET 2 B 4 LYS A 498 MET A 509 -1 O LEU A 499 N PHE A 489 SHEET 3 B 4 THR A 645 HIS A 656 -1 O HIS A 656 N THR A 507 SHEET 4 B 4 THR A 630 GLN A 636 -1 N VAL A 631 O ILE A 650 SHEET 1 C 2 THR A 402 TYR A 403 0 SHEET 2 C 2 VAL A 408 LYS A 409 -1 O VAL A 408 N TYR A 403 SHEET 1 D 4 GLN A 423 GLN A 426 0 SHEET 2 D 4 PRO A 414 VAL A 420 -1 N ILE A 418 O PHE A 425 SHEET 3 D 4 GLU A 453 ASP A 460 -1 O GLU A 455 N ARG A 419 SHEET 4 D 4 ASP A 467 ASP A 475 -1 O LEU A 469 N LEU A 458 SHEET 1 E 4 GLN A 571 GLU A 572 0 SHEET 2 E 4 PRO A 560 MET A 564 -1 N MET A 564 O GLN A 571 SHEET 3 E 4 ASP A 599 ASP A 606 -1 O ARG A 605 N VAL A 561 SHEET 4 E 4 SER A 612 PRO A 619 -1 O LEU A 613 N VAL A 604 LINK O LYS A 400 CA CA A 802 1555 1555 2.57 LINK OD1 ASP A 401 CA CA A 801 1555 1555 2.39 LINK OD2 ASP A 401 CA CA A 801 1555 1555 2.54 LINK OD2 ASP A 401 CA CA A 802 1555 1555 2.38 LINK OD2 ASP A 413 CA CA A 801 1555 1555 2.34 LINK OD1 ASP A 460 CA CA A 801 1555 1555 2.37 LINK OD2 ASP A 460 CA CA A 801 1555 1555 2.80 LINK OD2 ASP A 460 CA CA A 802 1555 1555 2.34 LINK O GLU A 461 CA CA A 801 1555 1555 2.56 LINK OD1 ASP A 462 CA CA A 801 1555 1555 2.33 LINK OD1 ASP A 462 CA CA A 802 1555 1555 2.47 LINK OD2 ASP A 462 CA CA A 802 1555 1555 2.49 LINK O ASP A 462 CA CA A 803 1555 1555 2.40 LINK O ASP A 464 CA CA A 803 1555 1555 2.37 LINK OD1 ASP A 466 CA CA A 803 1555 1555 2.35 LINK OD2 ASP A 467 CA CA A 802 1555 1555 2.37 LINK CA CA A 801 O HOH A 903 1555 1555 2.44 LINK CA CA A 802 O HOH A 904 1555 1555 2.44 LINK CA CA A 803 O HOH A 901 1555 1555 2.44 LINK CA CA A 803 O HOH A 902 1555 1555 2.45 SITE 1 AC1 6 ASP A 401 ASP A 413 ASP A 460 GLU A 461 SITE 2 AC1 6 ASP A 462 HOH A 903 SITE 1 AC2 6 LYS A 400 ASP A 401 ASP A 460 ASP A 462 SITE 2 AC2 6 ASP A 467 HOH A 904 SITE 1 AC3 5 ASP A 462 ASP A 464 ASP A 466 HOH A 901 SITE 2 AC3 5 HOH A 902 CRYST1 95.840 53.194 85.276 90.00 99.95 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010434 0.000000 0.001830 0.00000 SCALE2 0.000000 0.018799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011906 0.00000