HEADER HYDROLASE 23-NOV-13 4NQ2 TITLE STRUCTURE OF ZN(II)-BOUND METALLO-BETA-LACTAMSE VIM-2 FROM PSEUDOMONAS TITLE 2 AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE CLASS B VIM-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-261; COMPND 5 SYNONYM: CLASS B BETA-LACTAMASE, METALLO BETA-LACTAMASE, METALLO- COMPND 6 BETA-LACTAMASE, METALLO-BETA-LACTAMASE VIM-2, METTALO-BETA-LACTAMASE COMPND 7 VIM-2, VIM-2, VIM-2 CLASS B METALLO B-LACTAMASE, VIM-2 PROTEIN, VIM-2 COMPND 8 TYPE METALLO-BETA-LACTAMASE; COMPND 9 EC: 3.5.2.6; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM-2, BLAVIM2, VIM-2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS METALLO-BETA-LACTAMASE, HYDROLASE, ZINC BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.AITHA,J.C.NIX,M.W.CROWDER,R.C.PAGE REVDAT 5 20-SEP-23 4NQ2 1 REMARK LINK REVDAT 4 22-NOV-17 4NQ2 1 REMARK REVDAT 3 09-AUG-17 4NQ2 1 JRNL REVDAT 2 10-DEC-14 4NQ2 1 JRNL REVDAT 1 12-NOV-14 4NQ2 0 JRNL AUTH M.AITHA,A.R.MARTS,A.BERGSTROM,A.J.MOLLER,L.MORITZ,L.TURNER, JRNL AUTH 2 J.C.NIX,R.A.BONOMO,R.C.PAGE,D.L.TIERNEY,M.W.CROWDER JRNL TITL BIOCHEMICAL, MECHANISTIC, AND SPECTROSCOPIC CHARACTERIZATION JRNL TITL 2 OF METALLO-BETA-LACTAMASE VIM-2. JRNL REF BIOCHEMISTRY V. 53 7321 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 25356958 JRNL DOI 10.1021/BI500916Y REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1523) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 31217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.380 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.9019 - 3.7344 0.98 2202 145 0.1438 0.1696 REMARK 3 2 3.7344 - 2.9641 1.00 2136 146 0.1562 0.1769 REMARK 3 3 2.9641 - 2.5894 1.00 2123 145 0.1767 0.2363 REMARK 3 4 2.5894 - 2.3527 1.00 2107 144 0.1835 0.1864 REMARK 3 5 2.3527 - 2.1840 0.97 2007 135 0.2019 0.2618 REMARK 3 6 2.1840 - 2.0553 1.00 2111 149 0.1810 0.1965 REMARK 3 7 2.0553 - 1.9523 1.00 2080 140 0.1832 0.2076 REMARK 3 8 1.9523 - 1.8673 0.99 2040 141 0.2295 0.2702 REMARK 3 9 1.8673 - 1.7955 1.00 2100 142 0.1907 0.2200 REMARK 3 10 1.7955 - 1.7335 1.00 2075 145 0.1818 0.2233 REMARK 3 11 1.7335 - 1.6793 1.00 2071 139 0.1956 0.2760 REMARK 3 12 1.6793 - 1.6313 1.00 2061 143 0.1968 0.2340 REMARK 3 13 1.6313 - 1.5883 1.00 2071 140 0.2056 0.2761 REMARK 3 14 1.5883 - 1.5500 0.98 2041 138 0.2122 0.2439 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1762 REMARK 3 ANGLE : 1.049 2418 REMARK 3 CHIRALITY : 0.046 280 REMARK 3 PLANARITY : 0.006 321 REMARK 3 DIHEDRAL : 12.648 608 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 32:52) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7264 -33.8964 -4.7364 REMARK 3 T TENSOR REMARK 3 T11: 0.2690 T22: 0.1637 REMARK 3 T33: 0.3375 T12: 0.0133 REMARK 3 T13: -0.0435 T23: 0.1191 REMARK 3 L TENSOR REMARK 3 L11: 1.1962 L22: 3.9657 REMARK 3 L33: 5.3944 L12: 0.6634 REMARK 3 L13: -1.9136 L23: 0.4540 REMARK 3 S TENSOR REMARK 3 S11: -0.1068 S12: -0.4275 S13: -0.6500 REMARK 3 S21: 0.4143 S22: 0.1376 S23: -0.3278 REMARK 3 S31: 0.6417 S32: 0.3813 S33: 0.0870 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 53:65) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7136 -27.4512 -7.7277 REMARK 3 T TENSOR REMARK 3 T11: 0.1691 T22: 0.1378 REMARK 3 T33: 0.3992 T12: -0.0030 REMARK 3 T13: -0.0471 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 7.9448 L22: 2.3292 REMARK 3 L33: 4.9588 L12: 2.5211 REMARK 3 L13: 1.3803 L23: 0.1127 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: -0.1806 S13: -0.3244 REMARK 3 S21: 0.2954 S22: 0.1956 S23: -0.6882 REMARK 3 S31: 0.1021 S32: 0.5738 S33: -0.1389 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 66:102) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8154 -30.6571 -14.5824 REMARK 3 T TENSOR REMARK 3 T11: 0.1514 T22: 0.0731 REMARK 3 T33: 0.2817 T12: -0.0092 REMARK 3 T13: -0.0292 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.2845 L22: 2.4365 REMARK 3 L33: 1.7366 L12: -1.1811 REMARK 3 L13: -0.7983 L23: -0.3157 REMARK 3 S TENSOR REMARK 3 S11: 0.1561 S12: -0.0963 S13: -0.6054 REMARK 3 S21: 0.1248 S22: -0.0508 S23: -0.2997 REMARK 3 S31: 0.2728 S32: -0.0156 S33: -0.0235 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 103:122) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1167 -23.9137 -17.7319 REMARK 3 T TENSOR REMARK 3 T11: 0.1104 T22: 0.1048 REMARK 3 T33: 0.1241 T12: 0.0052 REMARK 3 T13: 0.0219 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 0.7443 L22: 6.0120 REMARK 3 L33: 1.3256 L12: 0.1438 REMARK 3 L13: 0.3101 L23: 0.7352 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: 0.1942 S13: -0.3309 REMARK 3 S21: 0.1225 S22: 0.0907 S23: -0.1162 REMARK 3 S31: 0.1582 S32: 0.0418 S33: -0.0664 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 123:146) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8912 -18.2092 -24.0858 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.1271 REMARK 3 T33: 0.0775 T12: 0.0196 REMARK 3 T13: 0.0362 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 2.3927 L22: 5.5873 REMARK 3 L33: 2.9460 L12: -0.4354 REMARK 3 L13: 0.0721 L23: 2.2079 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.3034 S13: 0.0331 REMARK 3 S21: -0.2968 S22: -0.0218 S23: -0.2766 REMARK 3 S31: -0.1461 S32: 0.0615 S33: -0.0233 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 147:199) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4381 -15.9825 -14.9638 REMARK 3 T TENSOR REMARK 3 T11: 0.1006 T22: 0.1057 REMARK 3 T33: 0.0722 T12: 0.0137 REMARK 3 T13: 0.0021 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.7704 L22: 1.9144 REMARK 3 L33: 1.8852 L12: 0.2093 REMARK 3 L13: 0.2806 L23: 0.5490 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: 0.0276 S13: -0.0501 REMARK 3 S21: -0.0862 S22: -0.0792 S23: 0.0846 REMARK 3 S31: -0.1094 S32: -0.2730 S33: 0.0630 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 200:215) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8082 -13.3268 -1.3336 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.1282 REMARK 3 T33: 0.1404 T12: 0.0080 REMARK 3 T13: -0.0125 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.2614 L22: 6.9340 REMARK 3 L33: 5.1172 L12: 2.4460 REMARK 3 L13: -0.9466 L23: -4.8708 REMARK 3 S TENSOR REMARK 3 S11: 0.0885 S12: -0.2038 S13: -0.1162 REMARK 3 S21: 0.3836 S22: -0.1114 S23: -0.5187 REMARK 3 S31: -0.1940 S32: 0.1479 S33: 0.1249 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 216:261) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0616 -13.1384 -0.5811 REMARK 3 T TENSOR REMARK 3 T11: 0.1395 T22: 0.1735 REMARK 3 T33: 0.0698 T12: 0.0129 REMARK 3 T13: 0.0184 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.4528 L22: 2.4983 REMARK 3 L33: 1.8699 L12: 0.7640 REMARK 3 L13: 0.4874 L23: 0.6499 REMARK 3 S TENSOR REMARK 3 S11: 0.0706 S12: -0.1964 S13: -0.0420 REMARK 3 S21: 0.2409 S22: -0.1187 S23: 0.0297 REMARK 3 S31: -0.1040 S32: -0.3542 S33: 0.0329 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NQ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000083513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK 2-CRYSTAL REMARK 200 SAGITALLY FOCUSED MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : TAURUS-1 CMOS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31324 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 55.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX DEV_1523 REMARK 200 STARTING MODEL: PDB ENTRY 1KO3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M AMMONIUM ACETATE, REMARK 280 0.0001M ZINC CHLORIDE, 0.1M TRIS, PH 7.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.14700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.13300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.88350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.14700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.13300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.88350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.14700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.13300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.88350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.14700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.13300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.88350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 TYR A 11 REMARK 465 LEU A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 ILE A 16 REMARK 465 MET A 17 REMARK 465 ALA A 18 REMARK 465 ILE A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 PHE A 25 REMARK 465 SER A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 37 OG REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 VAL A 41 CG1 CG2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 PHE A 62 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 LYS A 101 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 150.97 73.26 REMARK 500 TRP A 87 69.94 69.61 REMARK 500 ALA A 178 -107.15 -152.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 93.4 REMARK 620 3 HIS A 179 NE2 98.4 100.0 REMARK 620 4 HOH A 601 O 169.7 77.2 79.3 REMARK 620 5 HOH A 659 O 123.5 116.7 119.4 65.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 105.7 REMARK 620 3 HIS A 240 NE2 88.9 99.1 REMARK 620 4 HOH A 609 O 155.9 98.0 83.2 REMARK 620 5 HOH A 659 O 73.5 128.2 132.2 95.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 NE2 REMARK 620 2 ACT A 303 OXT 127.1 REMARK 620 3 ACT A 303 O 92.1 50.0 REMARK 620 4 ACT A 304 OXT 106.4 104.9 154.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KO3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN SOLVED AT LOWER RESOLUTION REMARK 900 RELATED ID: 1KO2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH CYS221 OXIDIZED TO A CYSTEINE SULFONIC ACID REMARK 900 RELATED ID: 2YZ3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN FROM PSEUDOMONAS PUTIDA IN COMPLEX WITH A REMARK 900 MERCAPTOCARBOXYLATE INHIBITOR DBREF 4NQ2 A 1 261 UNP Q9K2N0 Q9K2N0_PSEAI 1 261 SEQRES 1 A 261 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 A 261 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 A 261 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 A 261 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 A 261 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 A 261 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 A 261 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 A 261 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 A 261 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 A 261 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 A 261 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 A 261 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 A 261 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 A 261 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 A 261 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 A 261 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 A 261 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 A 261 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 A 261 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 A 261 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 A 261 ASN HET ZN A 301 1 HET ZN A 302 1 HET ACT A 303 4 HET ACT A 304 4 HET ZN A 305 1 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 2 ZN 3(ZN 2+) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *267(H2 O) HELIX 1 1 THR A 35 ILE A 39 5 5 HELIX 2 2 GLY A 88 ILE A 103 1 16 HELIX 3 3 HIS A 116 GLY A 121 1 6 HELIX 4 4 GLY A 122 ALA A 129 1 8 HELIX 5 5 SER A 136 GLY A 147 1 12 HELIX 6 6 CYS A 198 ILE A 200 5 3 HELIX 7 7 GLU A 218 TYR A 230 1 13 HELIX 8 8 LEU A 246 ASN A 261 1 16 SHEET 1 A 7 ARG A 45 ALA A 50 0 SHEET 2 A 7 VAL A 53 SER A 61 -1 O ILE A 57 N ARG A 45 SHEET 3 A 7 VAL A 66 ASP A 76 -1 O ILE A 73 N TRP A 54 SHEET 4 A 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 A 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 A 7 ALA A 132 ALA A 135 1 O ALA A 132 N ALA A 110 SHEET 7 A 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 B 5 ASP A 163 PHE A 167 0 SHEET 2 B 5 VAL A 170 TYR A 174 -1 O LEU A 172 N VAL A 165 SHEET 3 B 5 VAL A 185 VAL A 188 -1 O TYR A 187 N GLU A 171 SHEET 4 B 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 B 5 PHE A 235 PRO A 238 1 O PHE A 235 N LEU A 194 LINK NE2 HIS A 114 ZN ZN A 301 1555 1555 2.22 LINK ND1 HIS A 116 ZN ZN A 301 1555 1555 2.22 LINK OD2 ASP A 118 ZN ZN A 302 1555 1555 2.29 LINK NE2 HIS A 153 ZN ZN A 305 1555 1555 2.21 LINK NE2 HIS A 179 ZN ZN A 301 1555 1555 2.22 LINK SG CYS A 198 ZN ZN A 302 1555 1555 2.21 LINK NE2 HIS A 240 ZN ZN A 302 1555 1555 2.26 LINK ZN ZN A 301 O HOH A 601 1555 1555 2.57 LINK ZN ZN A 301 O HOH A 659 1555 1555 2.24 LINK ZN ZN A 302 O HOH A 609 1555 1555 2.31 LINK ZN ZN A 302 O HOH A 659 1555 1555 2.24 LINK OXT ACT A 303 ZN ZN A 305 1555 1555 2.32 LINK O ACT A 303 ZN ZN A 305 1555 1555 2.67 LINK OXT ACT A 304 ZN ZN A 305 1555 1555 2.26 SITE 1 AC1 6 HIS A 114 HIS A 116 HIS A 179 ZN A 302 SITE 2 AC1 6 HOH A 601 HOH A 659 SITE 1 AC2 7 ASP A 118 CYS A 198 HIS A 240 ZN A 301 SITE 2 AC2 7 HOH A 609 HOH A 659 HOH A 666 SITE 1 AC3 7 ALA A 132 HIS A 153 HIS A 251 ASN A 254 SITE 2 AC3 7 ACT A 304 ZN A 305 HOH A 455 SITE 1 AC4 10 ARG A 127 ALA A 132 THR A 133 THR A 152 SITE 2 AC4 10 HIS A 153 HIS A 251 ASN A 254 ACT A 303 SITE 3 AC4 10 ZN A 305 HOH A 451 SITE 1 AC5 4 HIS A 153 HIS A 251 ACT A 303 ACT A 304 CRYST1 68.294 78.266 79.767 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014643 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012537 0.00000