HEADER TRANSCRIPTION REGULATOR/DNA 24-NOV-13 4NQA TITLE CRYSTAL STRUCTURE OF LIGANDED HRXR-ALPHA/HLXR-BETA HETERODIMER ON DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 3 CHAIN: A, H; COMPND 4 FRAGMENT: UNP RESIDUES 98-462; COMPND 5 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1, RETINOID X COMPND 6 RECEPTOR ALPHA; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: LIVER X NUCLEAR RECEPTOR BETA; COMPND 10 CHAIN: B, I; COMPND 11 FRAGMENT: UNP RESIDUES 72-461; COMPND 12 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 1, GROUP H, MEMBER 2, ISOFORM COMPND 13 CRA_C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 17 CHAIN: C, D, J, K; COMPND 18 FRAGMENT: PEPTIDE (UNP RESIDUES 686-698); COMPND 19 SYNONYM: NCOA-2, CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75, BHLHE75, COMPND 20 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2, HTIF2; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 4; COMPND 23 MOLECULE: 5'-D(*TP*AP*AP*GP*GP*TP*CP*AP*CP*TP*TP*CP*AP*GP*GP*TP*CP*A) COMPND 24 -3'; COMPND 25 CHAIN: E, L; COMPND 26 ENGINEERED: YES; COMPND 27 OTHER_DETAILS: DR4 DNA RESPONSE ELEMENT; COMPND 28 MOL_ID: 5; COMPND 29 MOLECULE: 5'-D(*TP*AP*TP*GP*AP*CP*CP*TP*GP*AP*AP*GP*TP*GP*AP*CP*CP*T) COMPND 30 -3'; COMPND 31 CHAIN: F, M; COMPND 32 ENGINEERED: YES; COMPND 33 OTHER_DETAILS: DR4 DNA RESPONSE ELEMENT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RXRA, NR2B1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: NR1H2, HCG_22944; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET27; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: NCOA2, BHLHE75, TIF2; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 29 MOL_ID: 4; SOURCE 30 SYNTHETIC: YES; SOURCE 31 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 32 ORGANISM_TAXID: 32630; SOURCE 33 MOL_ID: 5; SOURCE 34 SYNTHETIC: YES; SOURCE 35 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 36 ORGANISM_TAXID: 32630 KEYWDS MULTI-DOMAIN, RXR, LXR, DBD, LBD, LIGAND, ZINC FINGER, TRANSCRIPTION KEYWDS 2 REGULATOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.H.LOU,G.TORESSON,C.BENOD,J.H.SUH,K.J.PHILLIPS,P.WEBB,J.A.GUSTAFSSON REVDAT 4 28-FEB-24 4NQA 1 REMARK SEQADV LINK REVDAT 3 09-NOV-16 4NQA 1 HET HETATM HETNAM SOURCE REVDAT 2 19-MAR-14 4NQA 1 JRNL REVDAT 1 26-FEB-14 4NQA 0 JRNL AUTH X.LOU,G.TORESSON,C.BENOD,J.H.SUH,K.J.PHILIPS,P.WEBB, JRNL AUTH 2 J.A.GUSTAFSSON JRNL TITL STRUCTURE OF THE RETINOID X RECEPTOR ALPHA-LIVER X RECEPTOR JRNL TITL 2 BETA (RXR ALPHA-LXR BETA ) HETERODIMER ON DNA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 277 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24561505 JRNL DOI 10.1038/NSMB.2778 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.6 REMARK 3 NUMBER OF REFLECTIONS : 25687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.3601 - 6.4071 0.91 3168 185 0.1607 0.1853 REMARK 3 2 6.4071 - 5.1084 0.93 3203 178 0.1849 0.2225 REMARK 3 3 5.1084 - 4.4694 0.93 3180 158 0.1673 0.2500 REMARK 3 4 4.4694 - 4.0638 0.95 3251 147 0.1618 0.1900 REMARK 3 5 4.0638 - 3.7742 0.92 3155 177 0.1818 0.2082 REMARK 3 6 3.7742 - 3.5528 0.89 3045 174 0.2061 0.2441 REMARK 3 7 3.5528 - 3.3756 0.69 2375 127 0.2278 0.2662 REMARK 3 8 3.3756 - 3.2292 0.47 1624 94 0.2489 0.3215 REMARK 3 9 3.2292 - 3.1052 0.37 1276 73 0.3350 0.3511 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 13380 REMARK 3 ANGLE : 0.828 18301 REMARK 3 CHIRALITY : 0.056 1975 REMARK 3 PLANARITY : 0.003 2131 REMARK 3 DIHEDRAL : 16.727 5277 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083521. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30417 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 11.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG8000, 18% ISOPROPANOL, 0.05 M REMARK 280 TRIS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.28850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 178.93275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.64425 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, I, J, K, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 98 REMARK 465 ASN A 99 REMARK 465 PRO A 100 REMARK 465 VAL A 101 REMARK 465 SER A 102 REMARK 465 SER A 103 REMARK 465 SER A 104 REMARK 465 GLU A 105 REMARK 465 ASP A 106 REMARK 465 ILE A 107 REMARK 465 LYS A 108 REMARK 465 PRO A 109 REMARK 465 PRO A 110 REMARK 465 LEU A 111 REMARK 465 GLY A 112 REMARK 465 LEU A 113 REMARK 465 ASN A 114 REMARK 465 GLY A 115 REMARK 465 VAL A 116 REMARK 465 LEU A 117 REMARK 465 LYS A 118 REMARK 465 VAL A 119 REMARK 465 PRO A 120 REMARK 465 ALA A 121 REMARK 465 HIS A 122 REMARK 465 PRO A 123 REMARK 465 SER A 124 REMARK 465 GLY A 125 REMARK 465 ASN A 126 REMARK 465 MET A 127 REMARK 465 LYS A 213 REMARK 465 ASP A 214 REMARK 465 ARG A 215 REMARK 465 ASN A 216 REMARK 465 GLU A 217 REMARK 465 ASN A 218 REMARK 465 GLU A 219 REMARK 465 VAL A 220 REMARK 465 GLU A 221 REMARK 465 SER A 222 REMARK 465 THR A 223 REMARK 465 VAL A 250 REMARK 465 ALA A 457 REMARK 465 PRO A 458 REMARK 465 HIS A 459 REMARK 465 GLN A 460 REMARK 465 MET A 461 REMARK 465 THR A 462 REMARK 465 MET B 71 REMARK 465 LYS B 72 REMARK 465 ARG B 73 REMARK 465 SER B 193 REMARK 465 SER B 194 REMARK 465 ALA B 195 REMARK 465 SER B 196 REMARK 465 GLY B 197 REMARK 465 PRO B 198 REMARK 465 GLY B 199 REMARK 465 ALA B 200 REMARK 465 SER B 201 REMARK 465 PRO B 202 REMARK 465 GLY B 203 REMARK 465 GLY B 204 REMARK 465 SER B 205 REMARK 465 GLU B 206 REMARK 465 ALA B 207 REMARK 465 GLY B 208 REMARK 465 VAL B 459 REMARK 465 HIS B 460 REMARK 465 GLU B 461 REMARK 465 LYS C 686 REMARK 465 SER C 697 REMARK 465 SER C 698 REMARK 465 LYS D 686 REMARK 465 MET H 98 REMARK 465 ASN H 99 REMARK 465 PRO H 100 REMARK 465 VAL H 101 REMARK 465 SER H 102 REMARK 465 SER H 103 REMARK 465 SER H 104 REMARK 465 GLU H 105 REMARK 465 ASP H 106 REMARK 465 ILE H 107 REMARK 465 LYS H 108 REMARK 465 PRO H 109 REMARK 465 PRO H 110 REMARK 465 LEU H 111 REMARK 465 GLY H 112 REMARK 465 LEU H 113 REMARK 465 ASN H 114 REMARK 465 GLY H 115 REMARK 465 VAL H 116 REMARK 465 LEU H 117 REMARK 465 LYS H 118 REMARK 465 VAL H 119 REMARK 465 PRO H 120 REMARK 465 ALA H 121 REMARK 465 HIS H 122 REMARK 465 PRO H 123 REMARK 465 SER H 124 REMARK 465 GLY H 125 REMARK 465 ASN H 126 REMARK 465 TYR H 249 REMARK 465 VAL H 250 REMARK 465 GLU H 251 REMARK 465 ALA H 252 REMARK 465 ASN H 253 REMARK 465 MET H 254 REMARK 465 GLY H 255 REMARK 465 LEU H 256 REMARK 465 ASN H 257 REMARK 465 PRO H 258 REMARK 465 SER H 259 REMARK 465 SER H 260 REMARK 465 PRO H 261 REMARK 465 HIS H 459 REMARK 465 GLN H 460 REMARK 465 MET H 461 REMARK 465 THR H 462 REMARK 465 MET I 71 REMARK 465 LYS I 72 REMARK 465 ARG I 73 REMARK 465 LYS I 74 REMARK 465 HIS I 460 REMARK 465 GLU I 461 REMARK 465 LYS J 686 REMARK 465 SER K 697 REMARK 465 SER K 698 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 155 CG CD NE CZ NH1 NH2 REMARK 470 GLU H 228 CG CD OE1 OE2 REMARK 470 LYS H 364 CG CD CE NZ REMARK 470 LYS I 240 CG CD CE NZ REMARK 470 ARG I 241 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU I 304 OG1 THR I 308 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG F 509 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG M 509 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 137 -73.09 -109.09 REMARK 500 HIS A 146 -70.62 -129.00 REMARK 500 ASP A 173 -62.99 -136.14 REMARK 500 GLU A 208 -11.12 68.99 REMARK 500 ARG A 211 -13.93 68.15 REMARK 500 GLU A 228 -17.18 72.97 REMARK 500 SER A 260 135.63 175.18 REMARK 500 PRO A 261 45.41 -88.14 REMARK 500 HIS A 288 -9.41 69.21 REMARK 500 HIS A 333 86.04 64.01 REMARK 500 ARG A 334 -28.88 -39.83 REMARK 500 LEU A 353 -75.69 -115.40 REMARK 500 HIS A 406 -65.77 -97.27 REMARK 500 LYS B 80 73.32 48.68 REMARK 500 LEU B 82 -162.61 -163.13 REMARK 500 HIS B 84 70.96 62.93 REMARK 500 LEU B 86 -142.71 55.83 REMARK 500 VAL B 89 -70.53 -94.51 REMARK 500 GLN B 175 -66.89 -130.43 REMARK 500 GLU B 177 -12.15 69.02 REMARK 500 GLN B 179 -18.00 74.08 REMARK 500 VAL B 186 -15.74 76.26 REMARK 500 GLU B 216 -153.72 -78.11 REMARK 500 VAL B 218 -122.50 63.87 REMARK 500 LEU B 220 73.24 54.60 REMARK 500 PRO B 247 44.38 -89.19 REMARK 500 LEU B 330 19.36 58.60 REMARK 500 LYS B 331 -21.93 65.54 REMARK 500 LYS C 688 -62.29 -127.71 REMARK 500 ILE H 137 -63.01 -100.58 REMARK 500 HIS H 146 -70.81 -124.11 REMARK 500 LYS H 165 -73.44 -123.95 REMARK 500 ASP H 173 -73.82 -75.77 REMARK 500 ASP H 176 -69.82 -139.35 REMARK 500 CYS H 177 -143.99 49.83 REMARK 500 LYS H 213 -169.89 -124.94 REMARK 500 ARG H 215 -76.14 -123.58 REMARK 500 GLU H 219 -65.27 -140.24 REMARK 500 SER H 222 -80.20 -78.98 REMARK 500 THR H 223 -74.65 -137.78 REMARK 500 SER H 224 -173.32 -172.60 REMARK 500 ASN H 227 -79.33 -112.10 REMARK 500 ASP H 229 -8.07 54.26 REMARK 500 PRO H 244 57.42 -93.93 REMARK 500 PHE H 289 -62.35 -102.65 REMARK 500 LEU H 353 -74.16 -122.79 REMARK 500 MET H 360 -13.14 68.03 REMARK 500 HIS H 406 -66.71 -97.23 REMARK 500 LYS I 80 -67.26 -132.49 REMARK 500 MET I 81 -143.68 52.49 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 216 GLY B 217 -147.88 REMARK 500 GLU H 217 ASN H 218 149.19 REMARK 500 GLU H 221 SER H 222 -149.54 REMARK 500 GLU H 228 ASP H 229 104.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 135 SG REMARK 620 2 CYS A 138 SG 99.7 REMARK 620 3 CYS A 152 SG 113.8 100.4 REMARK 620 4 CYS A 155 SG 108.8 110.0 121.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 171 SG REMARK 620 2 CYS A 177 SG 114.3 REMARK 620 3 CYS A 187 SG 97.4 107.0 REMARK 620 4 CYS A 190 SG 115.7 108.0 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 87 SG REMARK 620 2 CYS B 90 SG 109.3 REMARK 620 3 CYS B 104 SG 115.9 102.0 REMARK 620 4 CYS B 107 SG 113.1 112.3 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 125 SG REMARK 620 2 CYS B 131 SG 107.0 REMARK 620 3 CYS B 141 SG 112.7 118.1 REMARK 620 4 CYS B 144 SG 111.6 102.4 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H 135 SG REMARK 620 2 CYS H 138 SG 100.0 REMARK 620 3 CYS H 152 SG 113.2 100.8 REMARK 620 4 CYS H 155 SG 111.4 107.2 121.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H 171 SG REMARK 620 2 CYS H 177 SG 117.8 REMARK 620 3 CYS H 187 SG 95.8 107.2 REMARK 620 4 CYS H 190 SG 117.1 107.0 111.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN I 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS I 87 SG REMARK 620 2 CYS I 90 SG 115.0 REMARK 620 3 CYS I 104 SG 108.8 107.5 REMARK 620 4 CYS I 107 SG 113.1 109.2 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN I 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS I 125 SG REMARK 620 2 CYS I 131 SG 111.6 REMARK 620 3 CYS I 141 SG 111.8 114.1 REMARK 620 4 CYS I 144 SG 112.8 100.4 105.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9CR A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 965 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9CR H 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 965 I 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN I 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN I 503 DBREF 4NQA A 98 462 UNP P19793 RXRA_HUMAN 98 462 DBREF 4NQA B 72 461 UNP F1D8P7 F1D8P7_HUMAN 72 461 DBREF 4NQA C 686 698 UNP Q15596 NCOA2_HUMAN 686 698 DBREF 4NQA D 686 698 UNP Q15596 NCOA2_HUMAN 686 698 DBREF 4NQA H 98 462 UNP P19793 RXRA_HUMAN 98 462 DBREF 4NQA I 72 461 UNP F1D8P7 F1D8P7_HUMAN 72 461 DBREF 4NQA J 686 698 UNP Q15596 NCOA2_HUMAN 686 698 DBREF 4NQA K 686 698 UNP Q15596 NCOA2_HUMAN 686 698 DBREF 4NQA E 501 518 PDB 4NQA 4NQA 501 518 DBREF 4NQA L 501 518 PDB 4NQA 4NQA 501 518 DBREF 4NQA F 501 518 PDB 4NQA 4NQA 501 518 DBREF 4NQA M 501 518 PDB 4NQA 4NQA 501 518 SEQADV 4NQA MET B 71 UNP F1D8P7 INITIATING METHIONINE SEQADV 4NQA MET I 71 UNP F1D8P7 INITIATING METHIONINE SEQRES 1 A 365 MET ASN PRO VAL SER SER SER GLU ASP ILE LYS PRO PRO SEQRES 2 A 365 LEU GLY LEU ASN GLY VAL LEU LYS VAL PRO ALA HIS PRO SEQRES 3 A 365 SER GLY ASN MET ALA SER PHE THR LYS HIS ILE CYS ALA SEQRES 4 A 365 ILE CYS GLY ASP ARG SER SER GLY LYS HIS TYR GLY VAL SEQRES 5 A 365 TYR SER CYS GLU GLY CYS LYS GLY PHE PHE LYS ARG THR SEQRES 6 A 365 VAL ARG LYS ASP LEU THR TYR THR CYS ARG ASP ASN LYS SEQRES 7 A 365 ASP CYS LEU ILE ASP LYS ARG GLN ARG ASN ARG CYS GLN SEQRES 8 A 365 TYR CYS ARG TYR GLN LYS CYS LEU ALA MET GLY MET LYS SEQRES 9 A 365 ARG GLU ALA VAL GLN GLU GLU ARG GLN ARG GLY LYS ASP SEQRES 10 A 365 ARG ASN GLU ASN GLU VAL GLU SER THR SER SER ALA ASN SEQRES 11 A 365 GLU ASP MET PRO VAL GLU ARG ILE LEU GLU ALA GLU LEU SEQRES 12 A 365 ALA VAL GLU PRO LYS THR GLU THR TYR VAL GLU ALA ASN SEQRES 13 A 365 MET GLY LEU ASN PRO SER SER PRO ASN ASP PRO VAL THR SEQRES 14 A 365 ASN ILE CYS GLN ALA ALA ASP LYS GLN LEU PHE THR LEU SEQRES 15 A 365 VAL GLU TRP ALA LYS ARG ILE PRO HIS PHE SER GLU LEU SEQRES 16 A 365 PRO LEU ASP ASP GLN VAL ILE LEU LEU ARG ALA GLY TRP SEQRES 17 A 365 ASN GLU LEU LEU ILE ALA SER PHE SER HIS ARG SER ILE SEQRES 18 A 365 ALA VAL LYS ASP GLY ILE LEU LEU ALA THR GLY LEU HIS SEQRES 19 A 365 VAL HIS ARG ASN SER ALA HIS SER ALA GLY VAL GLY ALA SEQRES 20 A 365 ILE PHE ASP ARG VAL LEU THR GLU LEU VAL SER LYS MET SEQRES 21 A 365 ARG ASP MET GLN MET ASP LYS THR GLU LEU GLY CYS LEU SEQRES 22 A 365 ARG ALA ILE VAL LEU PHE ASN PRO ASP SER LYS GLY LEU SEQRES 23 A 365 SER ASN PRO ALA GLU VAL GLU ALA LEU ARG GLU LYS VAL SEQRES 24 A 365 TYR ALA SER LEU GLU ALA TYR CYS LYS HIS LYS TYR PRO SEQRES 25 A 365 GLU GLN PRO GLY ARG PHE ALA LYS LEU LEU LEU ARG LEU SEQRES 26 A 365 PRO ALA LEU ARG SER ILE GLY LEU LYS CYS LEU GLU HIS SEQRES 27 A 365 LEU PHE PHE PHE LYS LEU ILE GLY ASP THR PRO ILE ASP SEQRES 28 A 365 THR PHE LEU MET GLU MET LEU GLU ALA PRO HIS GLN MET SEQRES 29 A 365 THR SEQRES 1 B 391 MET LYS ARG LYS LYS GLY PRO ALA PRO LYS MET LEU GLY SEQRES 2 B 391 HIS GLU LEU CYS ARG VAL CYS GLY ASP LYS ALA SER GLY SEQRES 3 B 391 PHE HIS TYR ASN VAL LEU SER CYS GLU GLY CYS LYS GLY SEQRES 4 B 391 PHE PHE ARG ARG SER VAL VAL ARG GLY GLY ALA ARG ARG SEQRES 5 B 391 TYR ALA CYS ARG GLY GLY GLY THR CYS GLN MET ASP ALA SEQRES 6 B 391 PHE MET ARG ARG LYS CYS GLN GLN CYS ARG LEU ARG LYS SEQRES 7 B 391 CYS LYS GLU ALA GLY MET ARG GLU GLN CYS VAL LEU SER SEQRES 8 B 391 GLU GLU GLN ILE ARG LYS LYS LYS ILE ARG LYS GLN GLN SEQRES 9 B 391 GLN GLN GLU SER GLN SER GLN SER GLN SER PRO VAL GLY SEQRES 10 B 391 PRO GLN GLY SER SER SER SER ALA SER GLY PRO GLY ALA SEQRES 11 B 391 SER PRO GLY GLY SER GLU ALA GLY SER GLN GLY SER GLY SEQRES 12 B 391 GLU GLY GLU GLY VAL GLN LEU THR ALA ALA GLN GLU LEU SEQRES 13 B 391 MET ILE GLN GLN LEU VAL ALA ALA GLN LEU GLN CYS ASN SEQRES 14 B 391 LYS ARG SER PHE SER ASP GLN PRO LYS VAL THR PRO TRP SEQRES 15 B 391 PRO LEU GLY ALA ASP PRO GLN SER ARG ASP ALA ARG GLN SEQRES 16 B 391 GLN ARG PHE ALA HIS PHE THR GLU LEU ALA ILE ILE SER SEQRES 17 B 391 VAL GLN GLU ILE VAL ASP PHE ALA LYS GLN VAL PRO GLY SEQRES 18 B 391 PHE LEU GLN LEU GLY ARG GLU ASP GLN ILE ALA LEU LEU SEQRES 19 B 391 LYS ALA SER THR ILE GLU ILE MET LEU LEU GLU THR ALA SEQRES 20 B 391 ARG ARG TYR ASN HIS GLU THR GLU CYS ILE THR PHE LEU SEQRES 21 B 391 LYS ASP PHE THR TYR SER LYS ASP ASP PHE HIS ARG ALA SEQRES 22 B 391 GLY LEU GLN VAL GLU PHE ILE ASN PRO ILE PHE GLU PHE SEQRES 23 B 391 SER ARG ALA MET ARG ARG LEU GLY LEU ASP ASP ALA GLU SEQRES 24 B 391 TYR ALA LEU LEU ILE ALA ILE ASN ILE PHE SER ALA ASP SEQRES 25 B 391 ARG PRO ASN VAL GLN GLU PRO GLY ARG VAL GLU ALA LEU SEQRES 26 B 391 GLN GLN PRO TYR VAL GLU ALA LEU LEU SER TYR THR ARG SEQRES 27 B 391 ILE LYS ARG PRO GLN ASP GLN LEU ARG PHE PRO ARG MET SEQRES 28 B 391 LEU MET LYS LEU VAL SER LEU ARG THR LEU SER SER VAL SEQRES 29 B 391 HIS SER GLU GLN VAL PHE ALA LEU ARG LEU GLN ASP LYS SEQRES 30 B 391 LYS LEU PRO PRO LEU LEU SER GLU ILE TRP ASP VAL HIS SEQRES 31 B 391 GLU SEQRES 1 C 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 1 D 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 1 E 18 DT DA DA DG DG DT DC DA DC DT DT DC DA SEQRES 2 E 18 DG DG DT DC DA SEQRES 1 F 18 DT DA DT DG DA DC DC DT DG DA DA DG DT SEQRES 2 F 18 DG DA DC DC DT SEQRES 1 H 365 MET ASN PRO VAL SER SER SER GLU ASP ILE LYS PRO PRO SEQRES 2 H 365 LEU GLY LEU ASN GLY VAL LEU LYS VAL PRO ALA HIS PRO SEQRES 3 H 365 SER GLY ASN MET ALA SER PHE THR LYS HIS ILE CYS ALA SEQRES 4 H 365 ILE CYS GLY ASP ARG SER SER GLY LYS HIS TYR GLY VAL SEQRES 5 H 365 TYR SER CYS GLU GLY CYS LYS GLY PHE PHE LYS ARG THR SEQRES 6 H 365 VAL ARG LYS ASP LEU THR TYR THR CYS ARG ASP ASN LYS SEQRES 7 H 365 ASP CYS LEU ILE ASP LYS ARG GLN ARG ASN ARG CYS GLN SEQRES 8 H 365 TYR CYS ARG TYR GLN LYS CYS LEU ALA MET GLY MET LYS SEQRES 9 H 365 ARG GLU ALA VAL GLN GLU GLU ARG GLN ARG GLY LYS ASP SEQRES 10 H 365 ARG ASN GLU ASN GLU VAL GLU SER THR SER SER ALA ASN SEQRES 11 H 365 GLU ASP MET PRO VAL GLU ARG ILE LEU GLU ALA GLU LEU SEQRES 12 H 365 ALA VAL GLU PRO LYS THR GLU THR TYR VAL GLU ALA ASN SEQRES 13 H 365 MET GLY LEU ASN PRO SER SER PRO ASN ASP PRO VAL THR SEQRES 14 H 365 ASN ILE CYS GLN ALA ALA ASP LYS GLN LEU PHE THR LEU SEQRES 15 H 365 VAL GLU TRP ALA LYS ARG ILE PRO HIS PHE SER GLU LEU SEQRES 16 H 365 PRO LEU ASP ASP GLN VAL ILE LEU LEU ARG ALA GLY TRP SEQRES 17 H 365 ASN GLU LEU LEU ILE ALA SER PHE SER HIS ARG SER ILE SEQRES 18 H 365 ALA VAL LYS ASP GLY ILE LEU LEU ALA THR GLY LEU HIS SEQRES 19 H 365 VAL HIS ARG ASN SER ALA HIS SER ALA GLY VAL GLY ALA SEQRES 20 H 365 ILE PHE ASP ARG VAL LEU THR GLU LEU VAL SER LYS MET SEQRES 21 H 365 ARG ASP MET GLN MET ASP LYS THR GLU LEU GLY CYS LEU SEQRES 22 H 365 ARG ALA ILE VAL LEU PHE ASN PRO ASP SER LYS GLY LEU SEQRES 23 H 365 SER ASN PRO ALA GLU VAL GLU ALA LEU ARG GLU LYS VAL SEQRES 24 H 365 TYR ALA SER LEU GLU ALA TYR CYS LYS HIS LYS TYR PRO SEQRES 25 H 365 GLU GLN PRO GLY ARG PHE ALA LYS LEU LEU LEU ARG LEU SEQRES 26 H 365 PRO ALA LEU ARG SER ILE GLY LEU LYS CYS LEU GLU HIS SEQRES 27 H 365 LEU PHE PHE PHE LYS LEU ILE GLY ASP THR PRO ILE ASP SEQRES 28 H 365 THR PHE LEU MET GLU MET LEU GLU ALA PRO HIS GLN MET SEQRES 29 H 365 THR SEQRES 1 I 391 MET LYS ARG LYS LYS GLY PRO ALA PRO LYS MET LEU GLY SEQRES 2 I 391 HIS GLU LEU CYS ARG VAL CYS GLY ASP LYS ALA SER GLY SEQRES 3 I 391 PHE HIS TYR ASN VAL LEU SER CYS GLU GLY CYS LYS GLY SEQRES 4 I 391 PHE PHE ARG ARG SER VAL VAL ARG GLY GLY ALA ARG ARG SEQRES 5 I 391 TYR ALA CYS ARG GLY GLY GLY THR CYS GLN MET ASP ALA SEQRES 6 I 391 PHE MET ARG ARG LYS CYS GLN GLN CYS ARG LEU ARG LYS SEQRES 7 I 391 CYS LYS GLU ALA GLY MET ARG GLU GLN CYS VAL LEU SER SEQRES 8 I 391 GLU GLU GLN ILE ARG LYS LYS LYS ILE ARG LYS GLN GLN SEQRES 9 I 391 GLN GLN GLU SER GLN SER GLN SER GLN SER PRO VAL GLY SEQRES 10 I 391 PRO GLN GLY SER SER SER SER ALA SER GLY PRO GLY ALA SEQRES 11 I 391 SER PRO GLY GLY SER GLU ALA GLY SER GLN GLY SER GLY SEQRES 12 I 391 GLU GLY GLU GLY VAL GLN LEU THR ALA ALA GLN GLU LEU SEQRES 13 I 391 MET ILE GLN GLN LEU VAL ALA ALA GLN LEU GLN CYS ASN SEQRES 14 I 391 LYS ARG SER PHE SER ASP GLN PRO LYS VAL THR PRO TRP SEQRES 15 I 391 PRO LEU GLY ALA ASP PRO GLN SER ARG ASP ALA ARG GLN SEQRES 16 I 391 GLN ARG PHE ALA HIS PHE THR GLU LEU ALA ILE ILE SER SEQRES 17 I 391 VAL GLN GLU ILE VAL ASP PHE ALA LYS GLN VAL PRO GLY SEQRES 18 I 391 PHE LEU GLN LEU GLY ARG GLU ASP GLN ILE ALA LEU LEU SEQRES 19 I 391 LYS ALA SER THR ILE GLU ILE MET LEU LEU GLU THR ALA SEQRES 20 I 391 ARG ARG TYR ASN HIS GLU THR GLU CYS ILE THR PHE LEU SEQRES 21 I 391 LYS ASP PHE THR TYR SER LYS ASP ASP PHE HIS ARG ALA SEQRES 22 I 391 GLY LEU GLN VAL GLU PHE ILE ASN PRO ILE PHE GLU PHE SEQRES 23 I 391 SER ARG ALA MET ARG ARG LEU GLY LEU ASP ASP ALA GLU SEQRES 24 I 391 TYR ALA LEU LEU ILE ALA ILE ASN ILE PHE SER ALA ASP SEQRES 25 I 391 ARG PRO ASN VAL GLN GLU PRO GLY ARG VAL GLU ALA LEU SEQRES 26 I 391 GLN GLN PRO TYR VAL GLU ALA LEU LEU SER TYR THR ARG SEQRES 27 I 391 ILE LYS ARG PRO GLN ASP GLN LEU ARG PHE PRO ARG MET SEQRES 28 I 391 LEU MET LYS LEU VAL SER LEU ARG THR LEU SER SER VAL SEQRES 29 I 391 HIS SER GLU GLN VAL PHE ALA LEU ARG LEU GLN ASP LYS SEQRES 30 I 391 LYS LEU PRO PRO LEU LEU SER GLU ILE TRP ASP VAL HIS SEQRES 31 I 391 GLU SEQRES 1 J 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 1 K 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 1 L 18 DT DA DA DG DG DT DC DA DC DT DT DC DA SEQRES 2 L 18 DG DG DT DC DA SEQRES 1 M 18 DT DA DT DG DA DC DC DT DG DA DA DG DT SEQRES 2 M 18 DG DA DC DC DT HET 9CR A 501 22 HET ZN A 502 1 HET ZN A 503 1 HET 965 B 501 41 HET ZN B 502 1 HET ZN B 503 1 HET 9CR H 501 22 HET ZN H 502 1 HET ZN H 503 1 HET 965 I 501 41 HET ZN I 502 1 HET ZN I 503 1 HETNAM 9CR (9CIS)-RETINOIC ACID HETNAM ZN ZINC ION HETNAM 965 [3-(3-{[2-CHLORO-3-(TRIFLUOROMETHYL)BENZYL](2,2- HETNAM 2 965 DIPHENYLETHYL)AMINO}PROPOXY)PHENYL]ACETIC ACID FORMUL 13 9CR 2(C20 H28 O2) FORMUL 14 ZN 8(ZN 2+) FORMUL 16 965 2(C33 H31 CL F3 N O3) HELIX 1 1 SER A 129 ILE A 134 5 6 HELIX 2 2 CYS A 152 ASP A 166 1 15 HELIX 3 3 CYS A 187 MET A 198 1 12 HELIX 4 4 PRO A 231 GLU A 243 1 13 HELIX 5 5 ASP A 263 ILE A 286 1 24 HELIX 6 6 PRO A 293 SER A 317 1 25 HELIX 7 7 ILE A 318 VAL A 320 5 3 HELIX 8 8 ARG A 334 ALA A 340 1 7 HELIX 9 9 VAL A 342 LEU A 353 1 12 HELIX 10 10 LEU A 353 GLN A 361 1 9 HELIX 11 11 ASP A 363 PHE A 376 1 14 HELIX 12 12 ASN A 385 TYR A 408 1 24 HELIX 13 13 GLY A 413 GLY A 443 1 31 HELIX 14 14 ASP A 448 GLU A 456 1 9 HELIX 15 15 CYS B 104 ARG B 117 1 14 HELIX 16 16 PHE B 136 LYS B 140 5 5 HELIX 17 17 CYS B 141 ALA B 152 1 12 HELIX 18 18 SER B 161 ARG B 166 1 6 HELIX 19 19 LYS B 169 GLN B 174 1 6 HELIX 20 20 THR B 221 LYS B 240 1 20 HELIX 21 21 ARG B 241 PHE B 243 5 3 HELIX 22 22 ASP B 245 VAL B 249 5 5 HELIX 23 23 SER B 260 GLN B 288 1 29 HELIX 24 24 GLY B 291 LEU B 295 5 5 HELIX 25 25 GLY B 296 ARG B 319 1 24 HELIX 26 26 SER B 336 ALA B 343 1 8 HELIX 27 27 GLN B 346 MET B 360 1 15 HELIX 28 28 ASP B 366 PHE B 379 1 14 HELIX 29 29 GLU B 388 ARG B 411 1 24 HELIX 30 30 LEU B 416 MET B 423 1 8 HELIX 31 31 MET B 423 GLN B 445 1 23 HELIX 32 32 PRO B 450 TRP B 457 1 8 HELIX 33 33 LYS C 688 ASP C 696 1 9 HELIX 34 34 LYS D 688 GLN D 695 1 8 HELIX 35 35 SER H 129 ILE H 134 5 6 HELIX 36 36 CYS H 152 LYS H 165 1 14 HELIX 37 37 CYS H 187 MET H 198 1 12 HELIX 38 38 VAL H 232 VAL H 242 1 11 HELIX 39 39 ASP H 263 ARG H 285 1 23 HELIX 40 40 PRO H 293 SER H 317 1 25 HELIX 41 41 ARG H 334 ALA H 340 1 7 HELIX 42 42 VAL H 342 LEU H 353 1 12 HELIX 43 43 LEU H 353 ASP H 359 1 7 HELIX 44 44 ASP H 363 PHE H 376 1 14 HELIX 45 45 ASN H 385 TYR H 408 1 24 HELIX 46 46 GLY H 413 LEU H 420 1 8 HELIX 47 47 LEU H 420 GLY H 443 1 24 HELIX 48 48 ASP H 448 GLU H 456 1 9 HELIX 49 49 CYS I 104 ARG I 117 1 14 HELIX 50 50 PHE I 136 LYS I 140 5 5 HELIX 51 51 CYS I 141 GLU I 151 1 11 HELIX 52 52 ARG I 155 VAL I 159 5 5 HELIX 53 53 ILE I 165 LYS I 172 1 8 HELIX 54 54 ALA I 222 SER I 242 1 21 HELIX 55 55 SER I 260 GLN I 288 1 29 HELIX 56 56 GLY I 296 ARG I 319 1 24 HELIX 57 57 GLN I 346 ARG I 362 1 17 HELIX 58 58 ASP I 366 PHE I 379 1 14 HELIX 59 59 GLU I 388 ARG I 411 1 24 HELIX 60 60 LEU I 416 GLN I 445 1 30 HELIX 61 61 PRO I 450 ASP I 458 1 9 HELIX 62 62 LYS J 688 LEU J 694 1 7 HELIX 63 63 HIS K 687 ASP K 696 1 10 SHEET 1 A 2 GLY B 96 PHE B 97 0 SHEET 2 A 2 LEU B 102 SER B 103 -1 O SER B 103 N GLY B 96 SHEET 1 B 3 TYR B 320 ASN B 321 0 SHEET 2 B 3 CYS B 326 PHE B 329 -1 O CYS B 326 N ASN B 321 SHEET 3 B 3 PHE B 333 TYR B 335 -1 O PHE B 333 N PHE B 329 SHEET 1 C 2 GLY H 323 LEU H 325 0 SHEET 2 C 2 HIS H 331 HIS H 333 -1 O VAL H 332 N ILE H 324 SHEET 1 D 2 GLY I 96 PHE I 97 0 SHEET 2 D 2 LEU I 102 SER I 103 -1 O SER I 103 N GLY I 96 SHEET 1 E 2 ILE I 327 PHE I 329 0 SHEET 2 E 2 PHE I 333 TYR I 335 -1 O PHE I 333 N PHE I 329 LINK SG CYS A 135 ZN ZN A 502 1555 1555 2.31 LINK SG CYS A 138 ZN ZN A 502 1555 1555 2.29 LINK SG CYS A 152 ZN ZN A 502 1555 1555 2.30 LINK SG CYS A 155 ZN ZN A 502 1555 1555 2.29 LINK SG CYS A 171 ZN ZN A 503 1555 1555 2.31 LINK SG CYS A 177 ZN ZN A 503 1555 1555 2.31 LINK SG CYS A 187 ZN ZN A 503 1555 1555 2.31 LINK SG CYS A 190 ZN ZN A 503 1555 1555 2.31 LINK SG CYS B 87 ZN ZN B 502 1555 1555 2.38 LINK SG CYS B 90 ZN ZN B 502 1555 1555 2.19 LINK SG CYS B 104 ZN ZN B 502 1555 1555 2.30 LINK SG CYS B 107 ZN ZN B 502 1555 1555 2.33 LINK SG CYS B 125 ZN ZN B 503 1555 1555 2.27 LINK SG CYS B 131 ZN ZN B 503 1555 1555 2.38 LINK SG CYS B 141 ZN ZN B 503 1555 1555 2.36 LINK SG CYS B 144 ZN ZN B 503 1555 1555 2.30 LINK SG CYS H 135 ZN ZN H 502 1555 1555 2.35 LINK SG CYS H 138 ZN ZN H 502 1555 1555 2.23 LINK SG CYS H 152 ZN ZN H 502 1555 1555 2.30 LINK SG CYS H 155 ZN ZN H 502 1555 1555 2.29 LINK SG CYS H 171 ZN ZN H 503 1555 1555 2.36 LINK SG CYS H 177 ZN ZN H 503 1555 1555 2.34 LINK SG CYS H 187 ZN ZN H 503 1555 1555 2.24 LINK SG CYS H 190 ZN ZN H 503 1555 1555 2.27 LINK SG CYS I 87 ZN ZN I 502 1555 1555 2.38 LINK SG CYS I 90 ZN ZN I 502 1555 1555 2.32 LINK SG CYS I 104 ZN ZN I 502 1555 1555 2.29 LINK SG CYS I 107 ZN ZN I 502 1555 1555 2.32 LINK SG CYS I 125 ZN ZN I 503 1555 1555 2.30 LINK SG CYS I 131 ZN ZN I 503 1555 1555 2.32 LINK SG CYS I 141 ZN ZN I 503 1555 1555 2.28 LINK SG CYS I 144 ZN ZN I 503 1555 1555 2.27 CISPEP 1 ASP A 173 ASN A 174 0 8.78 CISPEP 2 ASN A 262 ASP A 263 0 -14.29 CISPEP 3 LYS A 321 ASP A 322 0 -9.35 CISPEP 4 ASP A 322 GLY A 323 0 26.44 CISPEP 5 GLU H 247 THR H 248 0 1.12 CISPEP 6 ALA I 200 SER I 201 0 17.07 CISPEP 7 SER I 201 PRO I 202 0 -4.60 CISPEP 8 GLY I 208 SER I 209 0 3.61 CISPEP 9 GLU I 214 GLY I 215 0 3.67 CISPEP 10 LYS I 331 ASP I 332 0 3.97 SITE 1 AC1 7 ILE A 268 GLN A 275 PHE A 313 ARG A 316 SITE 2 AC1 7 ALA A 327 CYS A 432 HIS A 435 SITE 1 AC2 5 CYS A 135 CYS A 138 CYS A 152 CYS A 155 SITE 2 AC2 5 ARG A 184 SITE 1 AC3 4 CYS A 171 CYS A 177 CYS A 187 CYS A 190 SITE 1 AC4 15 PHE B 271 LEU B 274 ALA B 275 SER B 278 SITE 2 AC4 15 ILE B 309 MET B 312 LEU B 313 THR B 316 SITE 3 AC4 15 ARG B 319 PHE B 329 LEU B 330 PHE B 340 SITE 4 AC4 15 PHE B 354 HIS B 435 TRP B 457 SITE 1 AC5 4 CYS B 87 CYS B 90 CYS B 104 CYS B 107 SITE 1 AC6 4 CYS B 125 CYS B 131 CYS B 141 CYS B 144 SITE 1 AC7 8 ALA H 271 GLN H 275 PHE H 313 ARG H 316 SITE 2 AC7 8 LEU H 326 ALA H 327 ILE H 345 CYS H 432 SITE 1 AC8 4 CYS H 135 CYS H 138 CYS H 152 CYS H 155 SITE 1 AC9 4 CYS H 171 CYS H 177 CYS H 187 CYS H 190 SITE 1 BC1 19 PHE I 271 LEU I 274 ALA I 275 SER I 278 SITE 2 BC1 19 GLU I 281 MET I 312 LEU I 313 THR I 316 SITE 3 BC1 19 ARG I 319 PHE I 329 LEU I 330 PHE I 340 SITE 4 BC1 19 LEU I 345 PHE I 349 ILE I 350 ILE I 353 SITE 5 BC1 19 PHE I 354 HIS I 435 TRP I 457 SITE 1 BC2 4 CYS I 87 CYS I 90 CYS I 104 CYS I 107 SITE 1 BC3 4 CYS I 125 CYS I 131 CYS I 141 CYS I 144 CRYST1 85.783 85.783 238.577 90.00 90.00 90.00 P 43 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011657 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011657 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004192 0.00000