HEADER TRANSCRIPTION/INHIBITOR 26-NOV-13 4NR4 TITLE CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN CREBBP IN COMPLEX WITH TITLE 2 AN ISOXAZOLYL-BENZIMIDAZOLE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREB-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1081-1197; COMPND 5 EC: 2.3.1.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBP, CREBBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, CHEMICAL TOOL, SMALL MOLECULE KEYWDS 2 INHIBITOR, TRANSCRIPTION, TRANSCRIPTION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,S.PICAUD,I.FELLETAR,D.HAY,O.FEDOROV,S.MARTIN,F.VON AUTHOR 2 DELFT,P.BRENNAN,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 20-SEP-23 4NR4 1 REMARK SEQADV LINK REVDAT 2 31-JAN-18 4NR4 1 AUTHOR JRNL REVDAT 1 18-DEC-13 4NR4 0 JRNL AUTH P.FILIPPAKOPOULOS,S.PICAUD,I.FELLETAR,D.HAY,O.FEDOROV, JRNL AUTH 2 S.MARTIN,F.VON DELFT,P.BRENNAN,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 3 C.BOUNTRA,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN CREBBP IN JRNL TITL 2 COMPLEX WITH AN ISOXAZOLYL-BENZIMIDAZOLE LIGAND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 28265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1433 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2014 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1372 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2747 ; 1.578 ; 2.031 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3337 ; 0.933 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 5.113 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;37.274 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 329 ;11.092 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ; 9.222 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 279 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2196 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 402 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1085 A 1095 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6951 70.1689 25.2587 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: 0.0285 REMARK 3 T33: 0.0176 T12: -0.0169 REMARK 3 T13: 0.0165 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 6.0452 L22: 4.6504 REMARK 3 L33: 1.3569 L12: 2.4952 REMARK 3 L13: 0.8534 L23: 2.4680 REMARK 3 S TENSOR REMARK 3 S11: 0.1269 S12: -0.0963 S13: 0.1378 REMARK 3 S21: -0.1592 S22: -0.0799 S23: -0.0572 REMARK 3 S31: -0.1053 S32: -0.0380 S33: -0.0470 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1096 A 1169 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4323 51.2357 20.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0345 REMARK 3 T33: 0.0281 T12: 0.0005 REMARK 3 T13: 0.0010 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1440 L22: 0.2700 REMARK 3 L33: 0.2083 L12: 0.0607 REMARK 3 L13: -0.0696 L23: -0.0869 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.0008 S13: 0.0164 REMARK 3 S21: 0.0108 S22: -0.0094 S23: 0.0136 REMARK 3 S31: 0.0210 S32: 0.0199 S33: 0.0161 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1170 A 1197 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7018 57.1731 17.2394 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: 0.0650 REMARK 3 T33: 0.0368 T12: 0.0104 REMARK 3 T13: 0.0017 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.1027 L22: 2.5990 REMARK 3 L33: 0.4414 L12: 0.4672 REMARK 3 L13: -0.1298 L23: -0.2599 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0169 S13: 0.0194 REMARK 3 S21: 0.0624 S22: -0.0151 S23: 0.1147 REMARK 3 S31: -0.0087 S32: -0.0421 S33: -0.0007 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1086 B 1099 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7693 19.5958 36.4666 REMARK 3 T TENSOR REMARK 3 T11: 0.0590 T22: 0.0301 REMARK 3 T33: 0.0713 T12: 0.0207 REMARK 3 T13: -0.0166 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 3.5004 L22: 8.2496 REMARK 3 L33: 1.0939 L12: -4.8912 REMARK 3 L13: 0.1689 L23: 1.0025 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: 0.0923 S13: 0.1342 REMARK 3 S21: -0.0350 S22: 0.0523 S23: -0.3458 REMARK 3 S31: 0.1264 S32: 0.1773 S33: -0.1565 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1100 B 1184 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9109 36.0012 41.8212 REMARK 3 T TENSOR REMARK 3 T11: 0.0250 T22: 0.0306 REMARK 3 T33: 0.0320 T12: -0.0022 REMARK 3 T13: -0.0006 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.2046 L22: 0.3311 REMARK 3 L33: 0.4079 L12: 0.1485 REMARK 3 L13: 0.0093 L23: 0.0740 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.0016 S13: -0.0140 REMARK 3 S21: -0.0073 S22: -0.0026 S23: -0.0289 REMARK 3 S31: 0.0031 S32: -0.0172 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1185 B 1197 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5291 18.9915 44.1869 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0278 REMARK 3 T33: 0.0486 T12: -0.0296 REMARK 3 T13: -0.0137 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.0159 L22: 6.7788 REMARK 3 L33: 3.6673 L12: -0.1664 REMARK 3 L13: 0.1880 L23: 0.6192 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0022 S13: 0.0013 REMARK 3 S21: 0.1451 S22: 0.0538 S23: -0.0460 REMARK 3 S31: 0.3747 S32: -0.0421 S33: -0.0705 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4NR4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28319 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 26.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.13100 REMARK 200 R SYM FOR SHELL (I) : 0.13100 REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3DWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MGCL, 0.1M TRIS PH 8.0, 20% PEG REMARK 280 6K, 10% ETGLY, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.43500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.42000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.55500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.42000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.43500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.55500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1079 REMARK 465 MET A 1080 REMARK 465 ARG A 1081 REMARK 465 LYS A 1082 REMARK 465 LYS A 1083 REMARK 465 ILE A 1084 REMARK 465 SER B 1079 REMARK 465 MET B 1080 REMARK 465 ARG B 1081 REMARK 465 LYS B 1082 REMARK 465 LYS B 1083 REMARK 465 ILE B 1084 REMARK 465 PHE B 1085 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A1085 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A1088 CD OE1 OE2 REMARK 470 LYS B1086 CG CD CE NZ REMARK 470 GLU B1088 CG CD OE1 OE2 REMARK 470 GLU B1089 CG CD OE1 OE2 REMARK 470 ARG B1091 CD NE CZ NH1 NH2 REMARK 470 GLN B1092 CD OE1 NE2 REMARK 470 LYS B1170 CG CD CE NZ REMARK 470 GLN B1187 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1351 O HOH B 1428 1.94 REMARK 500 O HOH A 1353 O HOH A 1426 1.99 REMARK 500 O HOH B 1358 O HOH B 1430 2.10 REMARK 500 OD1 ASN A 1131 O HOH A 1347 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 1127 O HOH A 1434 3645 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1127 OD1 REMARK 620 2 HOH B1331 O 88.1 REMARK 620 3 HOH B1362 O 89.1 176.5 REMARK 620 4 HOH B1365 O 91.6 86.9 91.1 REMARK 620 5 HOH B1432 O 88.9 92.8 89.3 179.5 REMARK 620 6 HOH B1433 O 179.4 92.5 90.3 88.4 91.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2LK A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2LK B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2LK B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NR5 RELATED DB: PDB REMARK 900 RELATED ID: 4NR6 RELATED DB: PDB REMARK 900 RELATED ID: 4NR7 RELATED DB: PDB DBREF 4NR4 A 1081 1197 UNP Q92793 CBP_HUMAN 1081 1197 DBREF 4NR4 B 1081 1197 UNP Q92793 CBP_HUMAN 1081 1197 SEQADV 4NR4 SER A 1079 UNP Q92793 EXPRESSION TAG SEQADV 4NR4 MET A 1080 UNP Q92793 EXPRESSION TAG SEQADV 4NR4 SER B 1079 UNP Q92793 EXPRESSION TAG SEQADV 4NR4 MET B 1080 UNP Q92793 EXPRESSION TAG SEQRES 1 A 119 SER MET ARG LYS LYS ILE PHE LYS PRO GLU GLU LEU ARG SEQRES 2 A 119 GLN ALA LEU MET PRO THR LEU GLU ALA LEU TYR ARG GLN SEQRES 3 A 119 ASP PRO GLU SER LEU PRO PHE ARG GLN PRO VAL ASP PRO SEQRES 4 A 119 GLN LEU LEU GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS SEQRES 5 A 119 ASN PRO MET ASP LEU SER THR ILE LYS ARG LYS LEU ASP SEQRES 6 A 119 THR GLY GLN TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP SEQRES 7 A 119 VAL TRP LEU MET PHE ASN ASN ALA TRP LEU TYR ASN ARG SEQRES 8 A 119 LYS THR SER ARG VAL TYR LYS PHE CYS SER LYS LEU ALA SEQRES 9 A 119 GLU VAL PHE GLU GLN GLU ILE ASP PRO VAL MET GLN SER SEQRES 10 A 119 LEU GLY SEQRES 1 B 119 SER MET ARG LYS LYS ILE PHE LYS PRO GLU GLU LEU ARG SEQRES 2 B 119 GLN ALA LEU MET PRO THR LEU GLU ALA LEU TYR ARG GLN SEQRES 3 B 119 ASP PRO GLU SER LEU PRO PHE ARG GLN PRO VAL ASP PRO SEQRES 4 B 119 GLN LEU LEU GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS SEQRES 5 B 119 ASN PRO MET ASP LEU SER THR ILE LYS ARG LYS LEU ASP SEQRES 6 B 119 THR GLY GLN TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP SEQRES 7 B 119 VAL TRP LEU MET PHE ASN ASN ALA TRP LEU TYR ASN ARG SEQRES 8 B 119 LYS THR SER ARG VAL TYR LYS PHE CYS SER LYS LEU ALA SEQRES 9 B 119 GLU VAL PHE GLU GLN GLU ILE ASP PRO VAL MET GLN SER SEQRES 10 B 119 LEU GLY HET 2LK A1201 24 HET EDO A1202 4 HET 2LK B1201 24 HET 2LK B1202 24 HET MG B1203 1 HET EDO B1204 4 HETNAM 2LK 1-(4-CHLOROBENZYL)-5-(3,5-DIMETHYL-1,2-OXAZOL-4-YL)-1H- HETNAM 2 2LK BENZIMIDAZOLE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 2LK 3(C19 H16 CL N3 O) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 7 MG MG 2+ FORMUL 9 HOH *286(H2 O) HELIX 1 1 LYS A 1086 GLN A 1104 1 19 HELIX 2 2 SER A 1108 ARG A 1112 5 5 HELIX 3 3 ASP A 1116 GLY A 1121 1 6 HELIX 4 4 ASP A 1124 VAL A 1129 1 6 HELIX 5 5 ASP A 1134 THR A 1144 1 11 HELIX 6 6 GLU A 1149 ASN A 1168 1 20 HELIX 7 7 SER A 1172 SER A 1195 1 24 HELIX 8 8 PRO B 1087 GLN B 1104 1 18 HELIX 9 9 SER B 1108 ARG B 1112 5 5 HELIX 10 10 ASP B 1116 GLY B 1121 1 6 HELIX 11 11 ASP B 1124 VAL B 1129 1 6 HELIX 12 12 ASP B 1134 THR B 1144 1 11 HELIX 13 13 GLU B 1149 ASN B 1168 1 20 HELIX 14 14 SER B 1172 LEU B 1196 1 25 LINK OD1 ASP B1127 MG MG B1203 1555 1555 2.01 LINK MG MG B1203 O HOH B1331 1555 1555 2.04 LINK MG MG B1203 O HOH B1362 1555 1555 2.08 LINK MG MG B1203 O HOH B1365 1555 1555 2.08 LINK MG MG B1203 O HOH B1432 1555 1555 2.08 LINK MG MG B1203 O HOH B1433 1555 1555 2.14 CISPEP 1 ASP A 1105 PRO A 1106 0 11.73 CISPEP 2 ASP B 1105 PRO B 1106 0 18.09 SITE 1 AC1 10 PRO A1110 GLN A1113 VAL A1115 LEU A1120 SITE 2 AC1 10 ILE A1122 ASN A1168 ARG A1173 HOH A1306 SITE 3 AC1 10 HOH A1329 2LK B1202 SITE 1 AC2 5 ASP A1124 TYR A1167 ARG A1169 HOH A1305 SITE 2 AC2 5 HOH A1370 SITE 1 AC3 12 PRO B1110 GLN B1113 VAL B1115 ILE B1122 SITE 2 AC3 12 TYR B1125 ASN B1168 ARG B1173 VAL B1174 SITE 3 AC3 12 PHE B1177 2LK B1202 HOH B1320 HOH B1429 SITE 1 AC4 14 PRO A1106 ARG A1173 PHE A1177 GLN A1194 SITE 2 AC4 14 2LK A1201 PRO B1106 GLU B1107 PHE B1126 SITE 3 AC4 14 LYS B1130 ARG B1173 LYS B1176 PHE B1177 SITE 4 AC4 14 2LK B1201 EDO B1204 SITE 1 AC5 6 ASP B1127 HOH B1331 HOH B1362 HOH B1365 SITE 2 AC5 6 HOH B1432 HOH B1433 SITE 1 AC6 5 ASP A1105 PRO A1106 LYS B1130 ASN B1131 SITE 2 AC6 5 2LK B1202 CRYST1 52.870 57.110 82.840 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018914 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012071 0.00000