data_4NS0 # _entry.id 4NS0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NS0 pdb_00004ns0 10.2210/pdb4ns0/pdb RCSB RCSB083583 ? ? WWPDB D_1000083583 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NP9 'The C2A domain of Rabphilin 3A in complex with I3P' unspecified PDB 4LT7 'The C2A domain of Rabphilin 3A in complex with one Ca ion' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NS0 _pdbx_database_status.recvd_initial_deposition_date 2013-11-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Guillen, J.' 1 'Ferrer-Orta, C.' 2 'Buxaderas, M.' 3 'Perez-sanchez, D.' 4 'Guerrero-Valero, M.' 5 'Luengo-Gil, G.' 6 'Pous, J.' 7 'Guerra, P.' 8 'Gomez-Fernandez, J.C.' 9 'Verdaguer, N.' 10 'Corbalan-Garcia, S.' 11 # _citation.id primary _citation.title 'Structural insights into the Ca2+ and PI(4,5)P2 binding modes of the C2 domains of rabphilin 3A and synaptotagmin 1.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 20503 _citation.page_last 20508 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 1091-6490 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24302762 _citation.pdbx_database_id_DOI 10.1073/pnas.1316179110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guillen, J.' 1 ? primary 'Ferrer-Orta, C.' 2 ? primary 'Buxaderas, M.' 3 ? primary 'Perez-Sanchez, D.' 4 ? primary 'Guerrero-Valero, M.' 5 ? primary 'Luengo-Gil, G.' 6 ? primary 'Pous, J.' 7 ? primary 'Guerra, P.' 8 ? primary 'Gomez-Fernandez, J.C.' 9 ? primary 'Verdaguer, N.' 10 ? primary 'Corbalan-Garcia, S.' 11 ? # _cell.entry_id 4NS0 _cell.length_a 37.970 _cell.length_b 38.910 _cell.length_c 88.720 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NS0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Rabphilin-3A 15305.478 1 ? ? 'C2 domain, UNP RESIDUES 378-510' ? 2 non-polymer syn ;[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate ; 746.566 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 113 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Exophilin-1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHG ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVI ; _entity_poly.pdbx_seq_one_letter_code_can ;DQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHG ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLN n 1 3 ALA n 1 4 THR n 1 5 THR n 1 6 LEU n 1 7 GLY n 1 8 ALA n 1 9 LEU n 1 10 GLU n 1 11 PHE n 1 12 SER n 1 13 LEU n 1 14 LEU n 1 15 TYR n 1 16 ASP n 1 17 GLN n 1 18 ASP n 1 19 ASN n 1 20 SER n 1 21 ASN n 1 22 LEU n 1 23 GLN n 1 24 CYS n 1 25 THR n 1 26 ILE n 1 27 ILE n 1 28 ARG n 1 29 ALA n 1 30 LYS n 1 31 GLY n 1 32 LEU n 1 33 LYS n 1 34 PRO n 1 35 MET n 1 36 ASP n 1 37 SER n 1 38 ASN n 1 39 GLY n 1 40 LEU n 1 41 ALA n 1 42 ASP n 1 43 PRO n 1 44 TYR n 1 45 VAL n 1 46 LYS n 1 47 LEU n 1 48 HIS n 1 49 LEU n 1 50 LEU n 1 51 PRO n 1 52 GLY n 1 53 ALA n 1 54 SER n 1 55 LYS n 1 56 SER n 1 57 ASN n 1 58 LYS n 1 59 LEU n 1 60 ARG n 1 61 THR n 1 62 LYS n 1 63 THR n 1 64 LEU n 1 65 ARG n 1 66 ASN n 1 67 THR n 1 68 ARG n 1 69 ASN n 1 70 PRO n 1 71 VAL n 1 72 TRP n 1 73 ASN n 1 74 GLU n 1 75 THR n 1 76 LEU n 1 77 GLN n 1 78 TYR n 1 79 HIS n 1 80 GLY n 1 81 ILE n 1 82 THR n 1 83 GLU n 1 84 GLU n 1 85 ASP n 1 86 MET n 1 87 GLN n 1 88 ARG n 1 89 LYS n 1 90 THR n 1 91 LEU n 1 92 ARG n 1 93 ILE n 1 94 SER n 1 95 VAL n 1 96 CYS n 1 97 ASP n 1 98 GLU n 1 99 ASP n 1 100 LYS n 1 101 PHE n 1 102 GLY n 1 103 HIS n 1 104 ASN n 1 105 GLU n 1 106 PHE n 1 107 ILE n 1 108 GLY n 1 109 GLU n 1 110 THR n 1 111 ARG n 1 112 PHE n 1 113 SER n 1 114 LEU n 1 115 LYS n 1 116 LYS n 1 117 LEU n 1 118 LYS n 1 119 ALA n 1 120 ASN n 1 121 GLN n 1 122 ARG n 1 123 LYS n 1 124 ASN n 1 125 PHE n 1 126 ASN n 1 127 ILE n 1 128 CYS n 1 129 LEU n 1 130 GLU n 1 131 ARG n 1 132 VAL n 1 133 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'brown rat,rat,rats' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Rph3a _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RP3A_RAT _struct_ref.pdbx_db_accession P47709 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHG ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVI ; _struct_ref.pdbx_align_begin 378 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NS0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 133 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P47709 _struct_ref_seq.db_align_beg 378 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 510 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 378 _struct_ref_seq.pdbx_auth_seq_align_end 510 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PIO non-polymer . ;[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate ; 'dioctanoyl l-alpha-phosphatidyl-d-myo-inositol 4,5-diphosphate' 'C25 H49 O19 P3' 746.566 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4NS0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_percent_sol 42.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '25mM Hepes, 20mM Ammonuim Sulphate, 25% PEG 4K, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-03-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.93 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_wavelength 0.93 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4NS0 _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.360 _reflns.d_resolution_high 1.800 _reflns.number_obs 12421 _reflns.number_all ? _reflns.percent_possible_obs 94.2 _reflns.pdbx_Rmerge_I_obs 0.13100 _reflns.pdbx_Rsym_value 0.06100 _reflns.pdbx_netI_over_sigmaI 15.0000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.900 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.78 _reflns_shell.d_res_low 1.89 _reflns_shell.percent_possible_all 96.9 _reflns_shell.Rmerge_I_obs 0.72000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4NS0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12047 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.36 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.47 _refine.ls_R_factor_obs 0.18612 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18405 _refine.ls_R_factor_R_free 0.22604 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 635 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.B_iso_mean 24.048 _refine.aniso_B[1][1] 0.14 _refine.aniso_B[2][2] -0.10 _refine.aniso_B[3][3] -0.04 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 2CHD _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.135 _refine.pdbx_overall_ESU_R_Free 0.129 _refine.overall_SU_ML 0.100 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.744 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1019 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 1171 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 44.36 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.019 ? 1077 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1029 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.200 2.007 ? 1457 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.982 3.000 ? 2366 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.611 5.000 ? 129 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.006 23.878 ? 49 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.630 15.000 ? 197 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7.480 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.183 0.200 ? 166 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1178 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 245 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.086 2.221 ? 513 'X-RAY DIFFRACTION' ? r_mcbond_other 1.070 2.219 ? 512 'X-RAY DIFFRACTION' ? r_mcangle_it 1.867 3.323 ? 640 'X-RAY DIFFRACTION' ? r_mcangle_other 1.929 3.297 ? 640 'X-RAY DIFFRACTION' ? r_scbond_it 1.265 2.497 ? 564 'X-RAY DIFFRACTION' ? r_scbond_other 1.253 2.472 ? 566 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 2.066 3.639 ? 820 'X-RAY DIFFRACTION' ? r_long_range_B_refined 6.694 18.865 ? 1224 'X-RAY DIFFRACTION' ? r_long_range_B_other 5.928 18.232 ? 1184 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.number_reflns_R_work 873 _refine_ls_shell.R_factor_R_work 0.375 _refine_ls_shell.percent_reflns_obs 99.78 _refine_ls_shell.R_factor_R_free 0.412 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4NS0 _struct.title 'The C2A domain of Rabphilin 3A in complex with PI(4,5)P2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NS0 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text ;C2 domain, Calcium binding, phospholipid binding, RABPHILIN-3A, C2A, SYNAPTIC EXOCYTOSIS METAL-BINDING, PROTEIN TRANSPORT, C-2 domain fold, EXOPHILIN-1 ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 17 ? ASN A 19 ? GLN A 394 ASN A 396 5 ? 3 HELX_P HELX_P2 2 SER A 54 ? SER A 56 ? SER A 431 SER A 433 5 ? 3 HELX_P HELX_P3 3 THR A 82 ? LYS A 89 ? THR A 459 LYS A 466 1 ? 8 HELX_P HELX_P4 4 LYS A 115 ? LEU A 117 ? LYS A 492 LEU A 494 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 50 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 427 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 51 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 428 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.44 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 71 ? HIS A 79 ? VAL A 448 HIS A 456 A 2 ASN A 21 ? LYS A 30 ? ASN A 398 LYS A 407 A 3 ALA A 8 ? ASP A 16 ? ALA A 385 ASP A 393 A 4 LYS A 123 ? CYS A 128 ? LYS A 500 CYS A 505 B 1 LYS A 58 ? ARG A 60 ? LYS A 435 ARG A 437 B 2 PRO A 43 ? LEU A 50 ? PRO A 420 LEU A 427 B 3 THR A 90 ? GLU A 98 ? THR A 467 GLU A 475 B 4 ASN A 104 ? SER A 113 ? ASN A 481 SER A 490 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 76 ? O LEU A 453 N CYS A 24 ? N CYS A 401 A 2 3 O GLN A 23 ? O GLN A 400 N LEU A 14 ? N LEU A 391 A 3 4 N PHE A 11 ? N PHE A 388 O PHE A 125 ? O PHE A 502 B 1 2 O LEU A 59 ? O LEU A 436 N LEU A 47 ? N LEU A 424 B 2 3 N HIS A 48 ? N HIS A 425 O ARG A 92 ? O ARG A 469 B 3 4 N ILE A 93 ? N ILE A 470 O THR A 110 ? O THR A 487 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PIO 601 ? 14 'BINDING SITE FOR RESIDUE PIO A 601' AC2 Software A SO4 602 ? 4 'BINDING SITE FOR RESIDUE SO4 A 602' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 LYS A 33 ? LYS A 410 . ? 4_556 ? 2 AC1 14 PRO A 34 ? PRO A 411 . ? 4_556 ? 3 AC1 14 MET A 35 ? MET A 412 . ? 4_556 ? 4 AC1 14 ASP A 36 ? ASP A 413 . ? 4_556 ? 5 AC1 14 SER A 37 ? SER A 414 . ? 4_556 ? 6 AC1 14 TYR A 44 ? TYR A 421 . ? 1_555 ? 7 AC1 14 LYS A 46 ? LYS A 423 . ? 1_555 ? 8 AC1 14 LYS A 58 ? LYS A 435 . ? 1_555 ? 9 AC1 14 LEU A 59 ? LEU A 436 . ? 1_555 ? 10 AC1 14 ARG A 60 ? ARG A 437 . ? 1_555 ? 11 AC1 14 GLU A 98 ? GLU A 475 . ? 1_555 ? 12 AC1 14 GLY A 102 ? GLY A 479 . ? 1_555 ? 13 AC1 14 HIS A 103 ? HIS A 480 . ? 1_555 ? 14 AC1 14 ASN A 104 ? ASN A 481 . ? 1_555 ? 15 AC2 4 LYS A 46 ? LYS A 423 . ? 1_555 ? 16 AC2 4 ARG A 65 ? ARG A 442 . ? 4_456 ? 17 AC2 4 ARG A 92 ? ARG A 469 . ? 1_555 ? 18 AC2 4 SER A 94 ? SER A 471 . ? 1_555 ? # _database_PDB_matrix.entry_id 4NS0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4NS0 _atom_sites.fract_transf_matrix[1][1] 0.026337 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025700 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011271 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 378 ? ? ? A . n A 1 2 GLN 2 379 ? ? ? A . n A 1 3 ALA 3 380 ? ? ? A . n A 1 4 THR 4 381 ? ? ? A . n A 1 5 THR 5 382 382 THR THR A . n A 1 6 LEU 6 383 383 LEU LEU A . n A 1 7 GLY 7 384 384 GLY GLY A . n A 1 8 ALA 8 385 385 ALA ALA A . n A 1 9 LEU 9 386 386 LEU LEU A . n A 1 10 GLU 10 387 387 GLU GLU A . n A 1 11 PHE 11 388 388 PHE PHE A . n A 1 12 SER 12 389 389 SER SER A . n A 1 13 LEU 13 390 390 LEU LEU A . n A 1 14 LEU 14 391 391 LEU LEU A . n A 1 15 TYR 15 392 392 TYR TYR A . n A 1 16 ASP 16 393 393 ASP ASP A . n A 1 17 GLN 17 394 394 GLN GLN A . n A 1 18 ASP 18 395 395 ASP ASP A . n A 1 19 ASN 19 396 396 ASN ASN A . n A 1 20 SER 20 397 397 SER SER A . n A 1 21 ASN 21 398 398 ASN ASN A . n A 1 22 LEU 22 399 399 LEU LEU A . n A 1 23 GLN 23 400 400 GLN GLN A . n A 1 24 CYS 24 401 401 CYS CYS A . n A 1 25 THR 25 402 402 THR THR A . n A 1 26 ILE 26 403 403 ILE ILE A . n A 1 27 ILE 27 404 404 ILE ILE A . n A 1 28 ARG 28 405 405 ARG ARG A . n A 1 29 ALA 29 406 406 ALA ALA A . n A 1 30 LYS 30 407 407 LYS LYS A . n A 1 31 GLY 31 408 408 GLY GLY A . n A 1 32 LEU 32 409 409 LEU LEU A . n A 1 33 LYS 33 410 410 LYS LYS A . n A 1 34 PRO 34 411 411 PRO PRO A . n A 1 35 MET 35 412 412 MET MET A . n A 1 36 ASP 36 413 413 ASP ASP A . n A 1 37 SER 37 414 414 SER SER A . n A 1 38 ASN 38 415 415 ASN ASN A . n A 1 39 GLY 39 416 416 GLY GLY A . n A 1 40 LEU 40 417 417 LEU LEU A . n A 1 41 ALA 41 418 418 ALA ALA A . n A 1 42 ASP 42 419 419 ASP ASP A . n A 1 43 PRO 43 420 420 PRO PRO A . n A 1 44 TYR 44 421 421 TYR TYR A . n A 1 45 VAL 45 422 422 VAL VAL A . n A 1 46 LYS 46 423 423 LYS LYS A . n A 1 47 LEU 47 424 424 LEU LEU A . n A 1 48 HIS 48 425 425 HIS HIS A . n A 1 49 LEU 49 426 426 LEU LEU A . n A 1 50 LEU 50 427 427 LEU LEU A . n A 1 51 PRO 51 428 428 PRO PRO A . n A 1 52 GLY 52 429 429 GLY GLY A . n A 1 53 ALA 53 430 430 ALA ALA A . n A 1 54 SER 54 431 431 SER SER A . n A 1 55 LYS 55 432 432 LYS LYS A . n A 1 56 SER 56 433 433 SER SER A . n A 1 57 ASN 57 434 434 ASN ASN A . n A 1 58 LYS 58 435 435 LYS LYS A . n A 1 59 LEU 59 436 436 LEU LEU A . n A 1 60 ARG 60 437 437 ARG ARG A . n A 1 61 THR 61 438 438 THR THR A . n A 1 62 LYS 62 439 439 LYS LYS A . n A 1 63 THR 63 440 440 THR THR A . n A 1 64 LEU 64 441 441 LEU LEU A . n A 1 65 ARG 65 442 442 ARG ARG A . n A 1 66 ASN 66 443 443 ASN ASN A . n A 1 67 THR 67 444 444 THR THR A . n A 1 68 ARG 68 445 445 ARG ARG A . n A 1 69 ASN 69 446 446 ASN ASN A . n A 1 70 PRO 70 447 447 PRO PRO A . n A 1 71 VAL 71 448 448 VAL VAL A . n A 1 72 TRP 72 449 449 TRP TRP A . n A 1 73 ASN 73 450 450 ASN ASN A . n A 1 74 GLU 74 451 451 GLU GLU A . n A 1 75 THR 75 452 452 THR THR A . n A 1 76 LEU 76 453 453 LEU LEU A . n A 1 77 GLN 77 454 454 GLN GLN A . n A 1 78 TYR 78 455 455 TYR TYR A . n A 1 79 HIS 79 456 456 HIS HIS A . n A 1 80 GLY 80 457 457 GLY GLY A . n A 1 81 ILE 81 458 458 ILE ILE A . n A 1 82 THR 82 459 459 THR THR A . n A 1 83 GLU 83 460 460 GLU GLU A . n A 1 84 GLU 84 461 461 GLU GLU A . n A 1 85 ASP 85 462 462 ASP ASP A . n A 1 86 MET 86 463 463 MET MET A . n A 1 87 GLN 87 464 464 GLN GLN A . n A 1 88 ARG 88 465 465 ARG ARG A . n A 1 89 LYS 89 466 466 LYS LYS A . n A 1 90 THR 90 467 467 THR THR A . n A 1 91 LEU 91 468 468 LEU LEU A . n A 1 92 ARG 92 469 469 ARG ARG A . n A 1 93 ILE 93 470 470 ILE ILE A . n A 1 94 SER 94 471 471 SER SER A . n A 1 95 VAL 95 472 472 VAL VAL A . n A 1 96 CYS 96 473 473 CYS CYS A . n A 1 97 ASP 97 474 474 ASP ASP A . n A 1 98 GLU 98 475 475 GLU GLU A . n A 1 99 ASP 99 476 476 ASP ASP A . n A 1 100 LYS 100 477 477 LYS LYS A . n A 1 101 PHE 101 478 478 PHE PHE A . n A 1 102 GLY 102 479 479 GLY GLY A . n A 1 103 HIS 103 480 480 HIS HIS A . n A 1 104 ASN 104 481 481 ASN ASN A . n A 1 105 GLU 105 482 482 GLU GLU A . n A 1 106 PHE 106 483 483 PHE PHE A . n A 1 107 ILE 107 484 484 ILE ILE A . n A 1 108 GLY 108 485 485 GLY GLY A . n A 1 109 GLU 109 486 486 GLU GLU A . n A 1 110 THR 110 487 487 THR THR A . n A 1 111 ARG 111 488 488 ARG ARG A . n A 1 112 PHE 112 489 489 PHE PHE A . n A 1 113 SER 113 490 490 SER SER A . n A 1 114 LEU 114 491 491 LEU LEU A . n A 1 115 LYS 115 492 492 LYS LYS A . n A 1 116 LYS 116 493 493 LYS LYS A . n A 1 117 LEU 117 494 494 LEU LEU A . n A 1 118 LYS 118 495 495 LYS LYS A . n A 1 119 ALA 119 496 496 ALA ALA A . n A 1 120 ASN 120 497 497 ASN ASN A . n A 1 121 GLN 121 498 498 GLN GLN A . n A 1 122 ARG 122 499 499 ARG ARG A . n A 1 123 LYS 123 500 500 LYS LYS A . n A 1 124 ASN 124 501 501 ASN ASN A . n A 1 125 PHE 125 502 502 PHE PHE A . n A 1 126 ASN 126 503 503 ASN ASN A . n A 1 127 ILE 127 504 504 ILE ILE A . n A 1 128 CYS 128 505 505 CYS CYS A . n A 1 129 LEU 129 506 506 LEU LEU A . n A 1 130 GLU 130 507 507 GLU GLU A . n A 1 131 ARG 131 508 508 ARG ARG A . n A 1 132 VAL 132 509 509 VAL VAL A . n A 1 133 ILE 133 510 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PIO 1 601 601 PIO PIO A . C 3 SO4 1 602 602 SO4 SO4 A . D 4 HOH 1 701 701 HOH HOH A . D 4 HOH 2 702 702 HOH HOH A . D 4 HOH 3 703 703 HOH HOH A . D 4 HOH 4 704 704 HOH HOH A . D 4 HOH 5 705 705 HOH HOH A . D 4 HOH 6 706 706 HOH HOH A . D 4 HOH 7 707 707 HOH HOH A . D 4 HOH 8 708 708 HOH HOH A . D 4 HOH 9 709 709 HOH HOH A . D 4 HOH 10 710 710 HOH HOH A . D 4 HOH 11 711 711 HOH HOH A . D 4 HOH 12 712 712 HOH HOH A . D 4 HOH 13 713 713 HOH HOH A . D 4 HOH 14 714 714 HOH HOH A . D 4 HOH 15 715 715 HOH HOH A . D 4 HOH 16 716 716 HOH HOH A . D 4 HOH 17 717 717 HOH HOH A . D 4 HOH 18 718 718 HOH HOH A . D 4 HOH 19 719 719 HOH HOH A . D 4 HOH 20 720 720 HOH HOH A . D 4 HOH 21 721 721 HOH HOH A . D 4 HOH 22 722 722 HOH HOH A . D 4 HOH 23 723 723 HOH HOH A . D 4 HOH 24 724 724 HOH HOH A . D 4 HOH 25 725 725 HOH HOH A . D 4 HOH 26 726 726 HOH HOH A . D 4 HOH 27 727 727 HOH HOH A . D 4 HOH 28 728 728 HOH HOH A . D 4 HOH 29 729 729 HOH HOH A . D 4 HOH 30 730 730 HOH HOH A . D 4 HOH 31 731 731 HOH HOH A . D 4 HOH 32 732 732 HOH HOH A . D 4 HOH 33 733 733 HOH HOH A . D 4 HOH 34 734 734 HOH HOH A . D 4 HOH 35 735 735 HOH HOH A . D 4 HOH 36 736 736 HOH HOH A . D 4 HOH 37 737 737 HOH HOH A . D 4 HOH 38 738 738 HOH HOH A . D 4 HOH 39 739 739 HOH HOH A . D 4 HOH 40 740 740 HOH HOH A . D 4 HOH 41 741 741 HOH HOH A . D 4 HOH 42 742 742 HOH HOH A . D 4 HOH 43 743 743 HOH HOH A . D 4 HOH 44 744 744 HOH HOH A . D 4 HOH 45 745 745 HOH HOH A . D 4 HOH 46 746 746 HOH HOH A . D 4 HOH 47 747 747 HOH HOH A . D 4 HOH 48 748 748 HOH HOH A . D 4 HOH 49 749 749 HOH HOH A . D 4 HOH 50 750 750 HOH HOH A . D 4 HOH 51 751 751 HOH HOH A . D 4 HOH 52 752 752 HOH HOH A . D 4 HOH 53 753 753 HOH HOH A . D 4 HOH 54 754 754 HOH HOH A . D 4 HOH 55 755 755 HOH HOH A . D 4 HOH 56 756 756 HOH HOH A . D 4 HOH 57 757 757 HOH HOH A . D 4 HOH 58 758 758 HOH HOH A . D 4 HOH 59 759 759 HOH HOH A . D 4 HOH 60 760 760 HOH HOH A . D 4 HOH 61 761 761 HOH HOH A . D 4 HOH 62 762 762 HOH HOH A . D 4 HOH 63 763 763 HOH HOH A . D 4 HOH 64 764 764 HOH HOH A . D 4 HOH 65 765 765 HOH HOH A . D 4 HOH 66 766 766 HOH HOH A . D 4 HOH 67 767 767 HOH HOH A . D 4 HOH 68 768 768 HOH HOH A . D 4 HOH 69 769 769 HOH HOH A . D 4 HOH 70 770 770 HOH HOH A . D 4 HOH 71 771 771 HOH HOH A . D 4 HOH 72 772 772 HOH HOH A . D 4 HOH 73 773 773 HOH HOH A . D 4 HOH 74 774 774 HOH HOH A . D 4 HOH 75 775 775 HOH HOH A . D 4 HOH 76 776 776 HOH HOH A . D 4 HOH 77 777 777 HOH HOH A . D 4 HOH 78 778 778 HOH HOH A . D 4 HOH 79 779 779 HOH HOH A . D 4 HOH 80 780 780 HOH HOH A . D 4 HOH 81 781 781 HOH HOH A . D 4 HOH 82 782 782 HOH HOH A . D 4 HOH 83 783 783 HOH HOH A . D 4 HOH 84 784 784 HOH HOH A . D 4 HOH 85 785 785 HOH HOH A . D 4 HOH 86 786 786 HOH HOH A . D 4 HOH 87 787 787 HOH HOH A . D 4 HOH 88 788 788 HOH HOH A . D 4 HOH 89 789 789 HOH HOH A . D 4 HOH 90 790 790 HOH HOH A . D 4 HOH 91 791 791 HOH HOH A . D 4 HOH 92 792 792 HOH HOH A . D 4 HOH 93 793 793 HOH HOH A . D 4 HOH 94 794 794 HOH HOH A . D 4 HOH 95 795 795 HOH HOH A . D 4 HOH 96 796 796 HOH HOH A . D 4 HOH 97 797 797 HOH HOH A . D 4 HOH 98 798 798 HOH HOH A . D 4 HOH 99 799 799 HOH HOH A . D 4 HOH 100 800 800 HOH HOH A . D 4 HOH 101 801 801 HOH HOH A . D 4 HOH 102 802 802 HOH HOH A . D 4 HOH 103 803 803 HOH HOH A . D 4 HOH 104 804 804 HOH HOH A . D 4 HOH 105 805 805 HOH HOH A . D 4 HOH 106 806 806 HOH HOH A . D 4 HOH 107 807 807 HOH HOH A . D 4 HOH 108 808 808 HOH HOH A . D 4 HOH 109 809 809 HOH HOH A . D 4 HOH 110 810 810 HOH HOH A . D 4 HOH 111 811 811 HOH HOH A . D 4 HOH 112 812 812 HOH HOH A . D 4 HOH 113 813 813 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-25 2 'Structure model' 1 1 2022-08-24 3 'Structure model' 1 2 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' database_2 3 2 'Structure model' struct_site 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_database_2.pdbx_DOI' 5 2 'Structure model' '_database_2.pdbx_database_accession' 6 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DNA 'data collection' . ? 1 XFIT 'data reduction' . ? 2 REFMAC refinement 5.8.0049 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 800 ? ? O A HOH 807 ? ? 1.62 2 1 O A HOH 728 ? ? O A HOH 810 ? ? 1.87 3 1 O A HOH 710 ? ? O A HOH 743 ? ? 1.97 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 404 ? ? -85.37 -76.63 2 1 MET A 412 ? ? -129.74 -107.01 3 1 ASP A 419 ? ? -119.00 77.62 4 1 SER A 431 ? ? 62.17 173.30 5 1 LYS A 432 ? ? 54.64 -74.34 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 460 ? CG ? A GLU 83 CG 2 1 Y 1 A GLU 460 ? CD ? A GLU 83 CD 3 1 Y 1 A GLU 460 ? OE1 ? A GLU 83 OE1 4 1 Y 1 A GLU 460 ? OE2 ? A GLU 83 OE2 5 1 Y 1 A GLU 461 ? CG ? A GLU 84 CG 6 1 Y 1 A GLU 461 ? CD ? A GLU 84 CD 7 1 Y 1 A GLU 461 ? OE1 ? A GLU 84 OE1 8 1 Y 1 A GLU 461 ? OE2 ? A GLU 84 OE2 9 1 Y 1 A GLN 464 ? CG ? A GLN 87 CG 10 1 Y 1 A GLN 464 ? CD ? A GLN 87 CD 11 1 Y 1 A GLN 464 ? OE1 ? A GLN 87 OE1 12 1 Y 1 A GLN 464 ? NE2 ? A GLN 87 NE2 13 1 Y 1 A LYS 492 ? CE ? A LYS 115 CE 14 1 Y 1 A LYS 492 ? NZ ? A LYS 115 NZ 15 1 Y 1 A LYS 495 ? CE ? A LYS 118 CE 16 1 Y 1 A LYS 495 ? NZ ? A LYS 118 NZ 17 1 N 1 A PIO 601 ? O1B ? B PIO 1 O1B 18 1 N 1 A PIO 601 ? C2B ? B PIO 1 C2B 19 1 N 1 A PIO 601 ? C3B ? B PIO 1 C3B 20 1 N 1 A PIO 601 ? C4A ? B PIO 1 C4A 21 1 N 1 A PIO 601 ? C4B ? B PIO 1 C4B 22 1 N 1 A PIO 601 ? C5A ? B PIO 1 C5A 23 1 N 1 A PIO 601 ? C5B ? B PIO 1 C5B 24 1 N 1 A PIO 601 ? C6A ? B PIO 1 C6A 25 1 N 1 A PIO 601 ? C6B ? B PIO 1 C6B 26 1 N 1 A PIO 601 ? C7A ? B PIO 1 C7A 27 1 N 1 A PIO 601 ? C7B ? B PIO 1 C7B 28 1 N 1 A PIO 601 ? C8A ? B PIO 1 C8A 29 1 N 1 A PIO 601 ? C8B ? B PIO 1 C8B # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 378 ? A ASP 1 2 1 Y 1 A GLN 379 ? A GLN 2 3 1 Y 1 A ALA 380 ? A ALA 3 4 1 Y 1 A THR 381 ? A THR 4 5 1 Y 1 A ILE 510 ? A ILE 133 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PIO C1 C N R 273 PIO O1 O N N 274 PIO P1 P N N 275 PIO C2 C N R 276 PIO O2 O N N 277 PIO C3 C N S 278 PIO O3 O N N 279 PIO C4 C N R 280 PIO O4 O N N 281 PIO P4 P N N 282 PIO C5 C N R 283 PIO O5 O N N 284 PIO P5 P N N 285 PIO C6 C N S 286 PIO O6 O N N 287 PIO O11 O N N 288 PIO O12 O N N 289 PIO O13 O N N 290 PIO C1A C N N 291 PIO O1A O N N 292 PIO C1B C N N 293 PIO O1B O N N 294 PIO C1C C N N 295 PIO C2A C N N 296 PIO C2B C N N 297 PIO C2C C N R 298 PIO O2C O N N 299 PIO C3A C N N 300 PIO C3B C N N 301 PIO C3C C N N 302 PIO O3C O N N 303 PIO O41 O N N 304 PIO O42 O N N 305 PIO O43 O N N 306 PIO C4A C N N 307 PIO C4B C N N 308 PIO O51 O N N 309 PIO O52 O N N 310 PIO O53 O N N 311 PIO C5A C N N 312 PIO C5B C N N 313 PIO C6A C N N 314 PIO C6B C N N 315 PIO C7A C N N 316 PIO C7B C N N 317 PIO C8A C N N 318 PIO C8B C N N 319 PIO H1 H N N 320 PIO H2 H N N 321 PIO H3 H N N 322 PIO H4 H N N 323 PIO H5 H N N 324 PIO H6 H N N 325 PIO H1C H N N 326 PIO H1CA H N N 327 PIO H3C H N N 328 PIO H3CA H N N 329 PIO H2A H N N 330 PIO H3A H N N 331 PIO H4A H N N 332 PIO H5A H N N 333 PIO H6A H N N 334 PIO H7A H N N 335 PIO H8A H N N 336 PIO H2AA H N N 337 PIO H3AA H N N 338 PIO H4AA H N N 339 PIO H5AA H N N 340 PIO H6AA H N N 341 PIO H7AA H N N 342 PIO H8AA H N N 343 PIO H8AB H N N 344 PIO H2B H N N 345 PIO H3B H N N 346 PIO H4B H N N 347 PIO H5B H N N 348 PIO H6B H N N 349 PIO H7B H N N 350 PIO H8B H N N 351 PIO H2BA H N N 352 PIO H3BA H N N 353 PIO H4BA H N N 354 PIO H5BA H N N 355 PIO H6BA H N N 356 PIO H7BA H N N 357 PIO H8BA H N N 358 PIO H8BB H N N 359 PIO H2C H N N 360 PIO HO2 H N N 361 PIO HO3 H N N 362 PIO HO6 H N N 363 PIO H41 H N N 364 PIO H43 H N N 365 PIO H51 H N N 366 PIO H52 H N N 367 PIO H11 H N N 368 PRO N N N N 369 PRO CA C N S 370 PRO C C N N 371 PRO O O N N 372 PRO CB C N N 373 PRO CG C N N 374 PRO CD C N N 375 PRO OXT O N N 376 PRO H H N N 377 PRO HA H N N 378 PRO HB2 H N N 379 PRO HB3 H N N 380 PRO HG2 H N N 381 PRO HG3 H N N 382 PRO HD2 H N N 383 PRO HD3 H N N 384 PRO HXT H N N 385 SER N N N N 386 SER CA C N S 387 SER C C N N 388 SER O O N N 389 SER CB C N N 390 SER OG O N N 391 SER OXT O N N 392 SER H H N N 393 SER H2 H N N 394 SER HA H N N 395 SER HB2 H N N 396 SER HB3 H N N 397 SER HG H N N 398 SER HXT H N N 399 SO4 S S N N 400 SO4 O1 O N N 401 SO4 O2 O N N 402 SO4 O3 O N N 403 SO4 O4 O N N 404 THR N N N N 405 THR CA C N S 406 THR C C N N 407 THR O O N N 408 THR CB C N R 409 THR OG1 O N N 410 THR CG2 C N N 411 THR OXT O N N 412 THR H H N N 413 THR H2 H N N 414 THR HA H N N 415 THR HB H N N 416 THR HG1 H N N 417 THR HG21 H N N 418 THR HG22 H N N 419 THR HG23 H N N 420 THR HXT H N N 421 TRP N N N N 422 TRP CA C N S 423 TRP C C N N 424 TRP O O N N 425 TRP CB C N N 426 TRP CG C Y N 427 TRP CD1 C Y N 428 TRP CD2 C Y N 429 TRP NE1 N Y N 430 TRP CE2 C Y N 431 TRP CE3 C Y N 432 TRP CZ2 C Y N 433 TRP CZ3 C Y N 434 TRP CH2 C Y N 435 TRP OXT O N N 436 TRP H H N N 437 TRP H2 H N N 438 TRP HA H N N 439 TRP HB2 H N N 440 TRP HB3 H N N 441 TRP HD1 H N N 442 TRP HE1 H N N 443 TRP HE3 H N N 444 TRP HZ2 H N N 445 TRP HZ3 H N N 446 TRP HH2 H N N 447 TRP HXT H N N 448 TYR N N N N 449 TYR CA C N S 450 TYR C C N N 451 TYR O O N N 452 TYR CB C N N 453 TYR CG C Y N 454 TYR CD1 C Y N 455 TYR CD2 C Y N 456 TYR CE1 C Y N 457 TYR CE2 C Y N 458 TYR CZ C Y N 459 TYR OH O N N 460 TYR OXT O N N 461 TYR H H N N 462 TYR H2 H N N 463 TYR HA H N N 464 TYR HB2 H N N 465 TYR HB3 H N N 466 TYR HD1 H N N 467 TYR HD2 H N N 468 TYR HE1 H N N 469 TYR HE2 H N N 470 TYR HH H N N 471 TYR HXT H N N 472 VAL N N N N 473 VAL CA C N S 474 VAL C C N N 475 VAL O O N N 476 VAL CB C N N 477 VAL CG1 C N N 478 VAL CG2 C N N 479 VAL OXT O N N 480 VAL H H N N 481 VAL H2 H N N 482 VAL HA H N N 483 VAL HB H N N 484 VAL HG11 H N N 485 VAL HG12 H N N 486 VAL HG13 H N N 487 VAL HG21 H N N 488 VAL HG22 H N N 489 VAL HG23 H N N 490 VAL HXT H N N 491 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PIO C1 O1 sing N N 260 PIO C1 C2 sing N N 261 PIO C1 C6 sing N N 262 PIO C1 H1 sing N N 263 PIO O1 P1 sing N N 264 PIO P1 O11 sing N N 265 PIO O11 H11 sing N N 266 PIO P1 O12 doub N N 267 PIO P1 O13 sing N N 268 PIO C2 O2 sing N N 269 PIO C2 C3 sing N N 270 PIO C2 H2 sing N N 271 PIO O2 HO2 sing N N 272 PIO C3 O3 sing N N 273 PIO C3 C4 sing N N 274 PIO C3 H3 sing N N 275 PIO O3 HO3 sing N N 276 PIO C4 O4 sing N N 277 PIO C4 C5 sing N N 278 PIO C4 H4 sing N N 279 PIO O4 P4 sing N N 280 PIO P4 O41 sing N N 281 PIO O41 H41 sing N N 282 PIO P4 O42 doub N N 283 PIO P4 O43 sing N N 284 PIO O43 H43 sing N N 285 PIO C5 O5 sing N N 286 PIO C5 C6 sing N N 287 PIO C5 H5 sing N N 288 PIO O5 P5 sing N N 289 PIO P5 O51 sing N N 290 PIO O51 H51 sing N N 291 PIO P5 O52 sing N N 292 PIO O52 H52 sing N N 293 PIO P5 O53 doub N N 294 PIO C6 O6 sing N N 295 PIO C6 H6 sing N N 296 PIO O6 HO6 sing N N 297 PIO O13 C1C sing N N 298 PIO C1A O1A doub N N 299 PIO C1A C2A sing N N 300 PIO C1A O2C sing N N 301 PIO C1B O1B doub N N 302 PIO C1B C2B sing N N 303 PIO C1B O3C sing N N 304 PIO C1C C2C sing N N 305 PIO C1C H1C sing N N 306 PIO C1C H1CA sing N N 307 PIO C2A C3A sing N N 308 PIO C2A H2A sing N N 309 PIO C2A H2AA sing N N 310 PIO C2B C3B sing N N 311 PIO C2B H2B sing N N 312 PIO C2B H2BA sing N N 313 PIO C2C O2C sing N N 314 PIO C2C C3C sing N N 315 PIO C2C H2C sing N N 316 PIO C3A C4A sing N N 317 PIO C3A H3A sing N N 318 PIO C3A H3AA sing N N 319 PIO C3B C4B sing N N 320 PIO C3B H3B sing N N 321 PIO C3B H3BA sing N N 322 PIO C3C O3C sing N N 323 PIO C3C H3C sing N N 324 PIO C3C H3CA sing N N 325 PIO C4A C5A sing N N 326 PIO C4A H4A sing N N 327 PIO C4A H4AA sing N N 328 PIO C4B C5B sing N N 329 PIO C4B H4B sing N N 330 PIO C4B H4BA sing N N 331 PIO C5A C6A sing N N 332 PIO C5A H5A sing N N 333 PIO C5A H5AA sing N N 334 PIO C5B C6B sing N N 335 PIO C5B H5B sing N N 336 PIO C5B H5BA sing N N 337 PIO C6A C7A sing N N 338 PIO C6A H6A sing N N 339 PIO C6A H6AA sing N N 340 PIO C6B C7B sing N N 341 PIO C6B H6B sing N N 342 PIO C6B H6BA sing N N 343 PIO C7A C8A sing N N 344 PIO C7A H7A sing N N 345 PIO C7A H7AA sing N N 346 PIO C7B C8B sing N N 347 PIO C7B H7B sing N N 348 PIO C7B H7BA sing N N 349 PIO C8A H8A sing N N 350 PIO C8A H8AA sing N N 351 PIO C8A H8AB sing N N 352 PIO C8B H8B sing N N 353 PIO C8B H8BA sing N N 354 PIO C8B H8BB sing N N 355 PRO N CA sing N N 356 PRO N CD sing N N 357 PRO N H sing N N 358 PRO CA C sing N N 359 PRO CA CB sing N N 360 PRO CA HA sing N N 361 PRO C O doub N N 362 PRO C OXT sing N N 363 PRO CB CG sing N N 364 PRO CB HB2 sing N N 365 PRO CB HB3 sing N N 366 PRO CG CD sing N N 367 PRO CG HG2 sing N N 368 PRO CG HG3 sing N N 369 PRO CD HD2 sing N N 370 PRO CD HD3 sing N N 371 PRO OXT HXT sing N N 372 SER N CA sing N N 373 SER N H sing N N 374 SER N H2 sing N N 375 SER CA C sing N N 376 SER CA CB sing N N 377 SER CA HA sing N N 378 SER C O doub N N 379 SER C OXT sing N N 380 SER CB OG sing N N 381 SER CB HB2 sing N N 382 SER CB HB3 sing N N 383 SER OG HG sing N N 384 SER OXT HXT sing N N 385 SO4 S O1 doub N N 386 SO4 S O2 doub N N 387 SO4 S O3 sing N N 388 SO4 S O4 sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TRP N CA sing N N 406 TRP N H sing N N 407 TRP N H2 sing N N 408 TRP CA C sing N N 409 TRP CA CB sing N N 410 TRP CA HA sing N N 411 TRP C O doub N N 412 TRP C OXT sing N N 413 TRP CB CG sing N N 414 TRP CB HB2 sing N N 415 TRP CB HB3 sing N N 416 TRP CG CD1 doub Y N 417 TRP CG CD2 sing Y N 418 TRP CD1 NE1 sing Y N 419 TRP CD1 HD1 sing N N 420 TRP CD2 CE2 doub Y N 421 TRP CD2 CE3 sing Y N 422 TRP NE1 CE2 sing Y N 423 TRP NE1 HE1 sing N N 424 TRP CE2 CZ2 sing Y N 425 TRP CE3 CZ3 doub Y N 426 TRP CE3 HE3 sing N N 427 TRP CZ2 CH2 doub Y N 428 TRP CZ2 HZ2 sing N N 429 TRP CZ3 CH2 sing Y N 430 TRP CZ3 HZ3 sing N N 431 TRP CH2 HH2 sing N N 432 TRP OXT HXT sing N N 433 TYR N CA sing N N 434 TYR N H sing N N 435 TYR N H2 sing N N 436 TYR CA C sing N N 437 TYR CA CB sing N N 438 TYR CA HA sing N N 439 TYR C O doub N N 440 TYR C OXT sing N N 441 TYR CB CG sing N N 442 TYR CB HB2 sing N N 443 TYR CB HB3 sing N N 444 TYR CG CD1 doub Y N 445 TYR CG CD2 sing Y N 446 TYR CD1 CE1 sing Y N 447 TYR CD1 HD1 sing N N 448 TYR CD2 CE2 doub Y N 449 TYR CD2 HD2 sing N N 450 TYR CE1 CZ doub Y N 451 TYR CE1 HE1 sing N N 452 TYR CE2 CZ sing Y N 453 TYR CE2 HE2 sing N N 454 TYR CZ OH sing N N 455 TYR OH HH sing N N 456 TYR OXT HXT sing N N 457 VAL N CA sing N N 458 VAL N H sing N N 459 VAL N H2 sing N N 460 VAL CA C sing N N 461 VAL CA CB sing N N 462 VAL CA HA sing N N 463 VAL C O doub N N 464 VAL C OXT sing N N 465 VAL CB CG1 sing N N 466 VAL CB CG2 sing N N 467 VAL CB HB sing N N 468 VAL CG1 HG11 sing N N 469 VAL CG1 HG12 sing N N 470 VAL CG1 HG13 sing N N 471 VAL CG2 HG21 sing N N 472 VAL CG2 HG22 sing N N 473 VAL CG2 HG23 sing N N 474 VAL OXT HXT sing N N 475 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate ; PIO 3 'SULFATE ION' SO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2CHD _pdbx_initial_refinement_model.details ? #