HEADER PROTEIN BINDING 28-NOV-13 4NSR TITLE CRYSTAL STRUCTURE OF THE IMMUNITY PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNITY PROTEIN; COMPND 3 CHAIN: B, C, A, E, F, D; COMPND 4 FRAGMENT: UNP RESIDUES 26-122; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: VC_A0124; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELIX, PEPTIDOGLYCAN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.DONG,Z.-Q.GAO,Y.-H.DONG REVDAT 4 28-FEB-24 4NSR 1 SEQADV REVDAT 3 11-JUN-14 4NSR 1 JRNL REVDAT 2 21-MAY-14 4NSR 1 JRNL REVDAT 1 16-APR-14 4NSR 0 JRNL AUTH J.ZHANG,H.ZHANG,Z.GAO,H.HU,C.DONG,Y.H.DONG JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF THE TYPE VI SPIKE JRNL TITL 2 PROTEIN VGRG3 BY A COGNATE IMMUNITY PROTEIN. JRNL REF FEBS LETT. V. 588 1891 2014 JRNL REFN ISSN 0014-5793 JRNL PMID 24751834 JRNL DOI 10.1016/J.FEBSLET.2014.04.016 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 15653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1207 - 5.0760 0.96 2555 125 0.2053 0.2379 REMARK 3 2 5.0760 - 4.0299 0.98 2463 161 0.1802 0.2118 REMARK 3 3 4.0299 - 3.5207 0.99 2462 128 0.2165 0.3271 REMARK 3 4 3.5207 - 3.1989 0.99 2464 134 0.2509 0.3380 REMARK 3 5 3.1989 - 2.9697 0.99 2460 123 0.2763 0.3570 REMARK 3 6 2.9697 - 2.7946 0.99 2472 106 0.3514 0.4732 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 42.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.75730 REMARK 3 B22 (A**2) : -16.74690 REMARK 3 B33 (A**2) : 4.29280 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4415 REMARK 3 ANGLE : 1.545 5931 REMARK 3 CHIRALITY : 0.074 655 REMARK 3 PLANARITY : 0.010 777 REMARK 3 DIHEDRAL : 10.604 1695 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15700 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.795 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE TRIBASIC, 20% REMARK 280 W/V POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, 0.1M IMIDAZOLE REMARK 280 PH7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.99200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.39750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.14900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.39750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.99200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.14900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT OF A CRYSTAL STRUCTURE CONTAIN THREE REMARK 300 BIOLOGICAL UNITS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 17 REMARK 465 GLY B 18 REMARK 465 GLU B 19 REMARK 465 ASN B 20 REMARK 465 CYS B 21 REMARK 465 ASN B 22 REMARK 465 ASP B 23 REMARK 465 MET B 24 REMARK 465 GLY B 25 REMARK 465 GLU B 26 REMARK 465 ASN B 27 REMARK 465 CYS B 28 REMARK 465 ASN B 29 REMARK 465 ASP B 30 REMARK 465 THR B 31 REMARK 465 SER B 32 REMARK 465 LEU B 123 REMARK 465 LEU B 124 REMARK 465 GLU B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 MET C 17 REMARK 465 GLY C 18 REMARK 465 GLU C 19 REMARK 465 ASN C 20 REMARK 465 CYS C 21 REMARK 465 ASN C 22 REMARK 465 ASP C 23 REMARK 465 MET C 24 REMARK 465 GLY C 25 REMARK 465 GLU C 26 REMARK 465 ASN C 27 REMARK 465 CYS C 28 REMARK 465 ASN C 29 REMARK 465 LEU C 123 REMARK 465 LEU C 124 REMARK 465 GLU C 125 REMARK 465 HIS C 126 REMARK 465 HIS C 127 REMARK 465 HIS C 128 REMARK 465 HIS C 129 REMARK 465 HIS C 130 REMARK 465 HIS C 131 REMARK 465 MET A 17 REMARK 465 GLY A 18 REMARK 465 GLU A 19 REMARK 465 ASN A 20 REMARK 465 CYS A 21 REMARK 465 ASN A 22 REMARK 465 ASP A 23 REMARK 465 MET A 24 REMARK 465 GLY A 25 REMARK 465 GLU A 26 REMARK 465 ASN A 27 REMARK 465 CYS A 28 REMARK 465 ASN A 29 REMARK 465 ASP A 30 REMARK 465 THR A 31 REMARK 465 SER A 32 REMARK 465 GLY A 33 REMARK 465 LEU A 123 REMARK 465 LEU A 124 REMARK 465 GLU A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 MET E 17 REMARK 465 GLY E 18 REMARK 465 GLU E 19 REMARK 465 ASN E 20 REMARK 465 CYS E 21 REMARK 465 ASN E 22 REMARK 465 ASP E 23 REMARK 465 MET E 24 REMARK 465 GLY E 25 REMARK 465 GLU E 26 REMARK 465 ASN E 27 REMARK 465 CYS E 28 REMARK 465 ASN E 29 REMARK 465 ASP E 30 REMARK 465 THR E 31 REMARK 465 SER E 32 REMARK 465 GLY E 33 REMARK 465 LEU E 123 REMARK 465 LEU E 124 REMARK 465 GLU E 125 REMARK 465 HIS E 126 REMARK 465 HIS E 127 REMARK 465 HIS E 128 REMARK 465 HIS E 129 REMARK 465 HIS E 130 REMARK 465 HIS E 131 REMARK 465 MET F 17 REMARK 465 GLY F 18 REMARK 465 GLU F 19 REMARK 465 ASN F 20 REMARK 465 CYS F 21 REMARK 465 ASN F 22 REMARK 465 ASP F 23 REMARK 465 MET F 24 REMARK 465 GLY F 25 REMARK 465 GLU F 26 REMARK 465 ASN F 27 REMARK 465 CYS F 28 REMARK 465 ASN F 29 REMARK 465 ASP F 30 REMARK 465 THR F 31 REMARK 465 SER F 32 REMARK 465 GLY F 33 REMARK 465 LEU F 123 REMARK 465 LEU F 124 REMARK 465 GLU F 125 REMARK 465 HIS F 126 REMARK 465 HIS F 127 REMARK 465 HIS F 128 REMARK 465 HIS F 129 REMARK 465 HIS F 130 REMARK 465 HIS F 131 REMARK 465 MET D 17 REMARK 465 GLY D 18 REMARK 465 GLU D 19 REMARK 465 ASN D 20 REMARK 465 CYS D 21 REMARK 465 ASN D 22 REMARK 465 ASP D 23 REMARK 465 MET D 24 REMARK 465 GLY D 25 REMARK 465 GLU D 26 REMARK 465 ASN D 27 REMARK 465 CYS D 28 REMARK 465 ASN D 29 REMARK 465 ASP D 30 REMARK 465 THR D 31 REMARK 465 LEU D 124 REMARK 465 GLU D 125 REMARK 465 HIS D 126 REMARK 465 HIS D 127 REMARK 465 HIS D 128 REMARK 465 HIS D 129 REMARK 465 HIS D 130 REMARK 465 HIS D 131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 64 OD1 ASP C 120 2.03 REMARK 500 OH TYR F 64 OD1 ASP F 120 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 36 O SER F 58 1565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 41 CB CYS C 41 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 76 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 CYS F 41 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 59 96.96 -62.61 REMARK 500 LYS B 60 81.33 -64.23 REMARK 500 ASN B 121 46.01 -89.57 REMARK 500 THR C 31 15.14 -146.42 REMARK 500 SER C 59 97.39 -60.75 REMARK 500 LYS C 60 79.95 -63.93 REMARK 500 ASN C 121 45.10 -89.52 REMARK 500 SER A 59 94.94 -63.38 REMARK 500 LYS A 60 82.17 -66.21 REMARK 500 ASN A 121 44.39 -87.50 REMARK 500 SER E 59 96.52 -62.51 REMARK 500 LYS E 60 81.85 -64.13 REMARK 500 ASN E 121 45.85 -88.19 REMARK 500 SER F 59 96.61 -63.23 REMARK 500 LYS F 60 82.42 -64.63 REMARK 500 ASN F 121 46.29 -89.14 REMARK 500 SER D 59 96.20 -62.28 REMARK 500 LYS D 60 81.69 -64.48 REMARK 500 ASN D 121 47.38 -89.59 REMARK 500 SER D 122 26.83 -141.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NSO RELATED DB: PDB REMARK 900 THE IMMUNITY PROTEIN OF EFFECTOR-IMMUNITY COMPLEX(4NSO), DBREF 4NSR B 26 122 UNP Q9KN41 Q9KN41_VIBCH 26 122 DBREF 4NSR C 26 122 UNP Q9KN41 Q9KN41_VIBCH 26 122 DBREF 4NSR A 26 122 UNP Q9KN41 Q9KN41_VIBCH 26 122 DBREF 4NSR E 26 122 UNP Q9KN41 Q9KN41_VIBCH 26 122 DBREF 4NSR F 26 122 UNP Q9KN41 Q9KN41_VIBCH 26 122 DBREF 4NSR D 26 122 UNP Q9KN41 Q9KN41_VIBCH 26 122 SEQADV 4NSR MET B 17 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLY B 18 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLU B 19 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASN B 20 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR CYS B 21 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASN B 22 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASP B 23 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR MET B 24 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLY B 25 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR LEU B 123 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR LEU B 124 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLU B 125 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS B 126 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS B 127 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS B 128 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS B 129 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS B 130 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS B 131 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR MET C 17 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLY C 18 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLU C 19 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASN C 20 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR CYS C 21 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASN C 22 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASP C 23 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR MET C 24 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLY C 25 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR LEU C 123 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR LEU C 124 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLU C 125 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS C 126 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS C 127 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS C 128 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS C 129 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS C 130 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS C 131 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR MET A 17 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLY A 18 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLU A 19 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASN A 20 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR CYS A 21 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASN A 22 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASP A 23 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR MET A 24 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLY A 25 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR LEU A 123 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR LEU A 124 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLU A 125 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS A 126 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS A 127 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS A 128 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS A 129 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS A 130 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS A 131 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR MET E 17 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLY E 18 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLU E 19 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASN E 20 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR CYS E 21 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASN E 22 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASP E 23 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR MET E 24 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLY E 25 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR LEU E 123 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR LEU E 124 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLU E 125 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS E 126 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS E 127 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS E 128 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS E 129 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS E 130 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS E 131 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR MET F 17 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLY F 18 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLU F 19 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASN F 20 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR CYS F 21 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASN F 22 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASP F 23 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR MET F 24 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLY F 25 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR LEU F 123 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR LEU F 124 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLU F 125 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS F 126 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS F 127 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS F 128 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS F 129 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS F 130 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS F 131 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR MET D 17 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLY D 18 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLU D 19 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASN D 20 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR CYS D 21 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASN D 22 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR ASP D 23 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR MET D 24 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLY D 25 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR LEU D 123 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR LEU D 124 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR GLU D 125 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS D 126 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS D 127 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS D 128 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS D 129 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS D 130 UNP Q9KN41 EXPRESSION TAG SEQADV 4NSR HIS D 131 UNP Q9KN41 EXPRESSION TAG SEQRES 1 B 115 MET GLY GLU ASN CYS ASN ASP MET GLY GLU ASN CYS ASN SEQRES 2 B 115 ASP THR SER GLY VAL HIS GLN LYS ILE LEU VAL CYS ILE SEQRES 3 B 115 GLN ASN GLU ILE ALA LYS SER GLU THR GLN ILE ARG ASN SEQRES 4 B 115 ASN ILE SER SER LYS SER ILE ASP TYR GLY PHE PRO ASP SEQRES 5 B 115 ASP PHE TYR SER LYS GLN ARG LEU ALA ILE HIS GLU LYS SEQRES 6 B 115 CYS MET LEU TYR ILE ASN VAL GLY GLY GLN ARG GLY GLU SEQRES 7 B 115 LEU LEU MET ASN GLN CYS GLU LEU SER MET LEU GLN GLY SEQRES 8 B 115 LEU ASP ILE TYR ILE GLN GLN TYR ILE GLU ASP VAL ASP SEQRES 9 B 115 ASN SER LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 115 MET GLY GLU ASN CYS ASN ASP MET GLY GLU ASN CYS ASN SEQRES 2 C 115 ASP THR SER GLY VAL HIS GLN LYS ILE LEU VAL CYS ILE SEQRES 3 C 115 GLN ASN GLU ILE ALA LYS SER GLU THR GLN ILE ARG ASN SEQRES 4 C 115 ASN ILE SER SER LYS SER ILE ASP TYR GLY PHE PRO ASP SEQRES 5 C 115 ASP PHE TYR SER LYS GLN ARG LEU ALA ILE HIS GLU LYS SEQRES 6 C 115 CYS MET LEU TYR ILE ASN VAL GLY GLY GLN ARG GLY GLU SEQRES 7 C 115 LEU LEU MET ASN GLN CYS GLU LEU SER MET LEU GLN GLY SEQRES 8 C 115 LEU ASP ILE TYR ILE GLN GLN TYR ILE GLU ASP VAL ASP SEQRES 9 C 115 ASN SER LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 115 MET GLY GLU ASN CYS ASN ASP MET GLY GLU ASN CYS ASN SEQRES 2 A 115 ASP THR SER GLY VAL HIS GLN LYS ILE LEU VAL CYS ILE SEQRES 3 A 115 GLN ASN GLU ILE ALA LYS SER GLU THR GLN ILE ARG ASN SEQRES 4 A 115 ASN ILE SER SER LYS SER ILE ASP TYR GLY PHE PRO ASP SEQRES 5 A 115 ASP PHE TYR SER LYS GLN ARG LEU ALA ILE HIS GLU LYS SEQRES 6 A 115 CYS MET LEU TYR ILE ASN VAL GLY GLY GLN ARG GLY GLU SEQRES 7 A 115 LEU LEU MET ASN GLN CYS GLU LEU SER MET LEU GLN GLY SEQRES 8 A 115 LEU ASP ILE TYR ILE GLN GLN TYR ILE GLU ASP VAL ASP SEQRES 9 A 115 ASN SER LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 115 MET GLY GLU ASN CYS ASN ASP MET GLY GLU ASN CYS ASN SEQRES 2 E 115 ASP THR SER GLY VAL HIS GLN LYS ILE LEU VAL CYS ILE SEQRES 3 E 115 GLN ASN GLU ILE ALA LYS SER GLU THR GLN ILE ARG ASN SEQRES 4 E 115 ASN ILE SER SER LYS SER ILE ASP TYR GLY PHE PRO ASP SEQRES 5 E 115 ASP PHE TYR SER LYS GLN ARG LEU ALA ILE HIS GLU LYS SEQRES 6 E 115 CYS MET LEU TYR ILE ASN VAL GLY GLY GLN ARG GLY GLU SEQRES 7 E 115 LEU LEU MET ASN GLN CYS GLU LEU SER MET LEU GLN GLY SEQRES 8 E 115 LEU ASP ILE TYR ILE GLN GLN TYR ILE GLU ASP VAL ASP SEQRES 9 E 115 ASN SER LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 F 115 MET GLY GLU ASN CYS ASN ASP MET GLY GLU ASN CYS ASN SEQRES 2 F 115 ASP THR SER GLY VAL HIS GLN LYS ILE LEU VAL CYS ILE SEQRES 3 F 115 GLN ASN GLU ILE ALA LYS SER GLU THR GLN ILE ARG ASN SEQRES 4 F 115 ASN ILE SER SER LYS SER ILE ASP TYR GLY PHE PRO ASP SEQRES 5 F 115 ASP PHE TYR SER LYS GLN ARG LEU ALA ILE HIS GLU LYS SEQRES 6 F 115 CYS MET LEU TYR ILE ASN VAL GLY GLY GLN ARG GLY GLU SEQRES 7 F 115 LEU LEU MET ASN GLN CYS GLU LEU SER MET LEU GLN GLY SEQRES 8 F 115 LEU ASP ILE TYR ILE GLN GLN TYR ILE GLU ASP VAL ASP SEQRES 9 F 115 ASN SER LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 115 MET GLY GLU ASN CYS ASN ASP MET GLY GLU ASN CYS ASN SEQRES 2 D 115 ASP THR SER GLY VAL HIS GLN LYS ILE LEU VAL CYS ILE SEQRES 3 D 115 GLN ASN GLU ILE ALA LYS SER GLU THR GLN ILE ARG ASN SEQRES 4 D 115 ASN ILE SER SER LYS SER ILE ASP TYR GLY PHE PRO ASP SEQRES 5 D 115 ASP PHE TYR SER LYS GLN ARG LEU ALA ILE HIS GLU LYS SEQRES 6 D 115 CYS MET LEU TYR ILE ASN VAL GLY GLY GLN ARG GLY GLU SEQRES 7 D 115 LEU LEU MET ASN GLN CYS GLU LEU SER MET LEU GLN GLY SEQRES 8 D 115 LEU ASP ILE TYR ILE GLN GLN TYR ILE GLU ASP VAL ASP SEQRES 9 D 115 ASN SER LEU LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 7 HOH *38(H2 O) HELIX 1 1 GLY B 33 SER B 58 1 26 HELIX 2 2 ASP B 69 MET B 83 1 15 HELIX 3 3 LEU B 84 VAL B 88 5 5 HELIX 4 4 GLY B 89 ASN B 121 1 33 HELIX 5 5 GLY C 33 SER C 58 1 26 HELIX 6 6 ASP C 69 MET C 83 1 15 HELIX 7 7 LEU C 84 ASN C 87 5 4 HELIX 8 8 GLY C 89 ASN C 121 1 33 HELIX 9 9 HIS A 35 SER A 58 1 24 HELIX 10 10 ASP A 69 MET A 83 1 15 HELIX 11 11 LEU A 84 VAL A 88 5 5 HELIX 12 12 GLY A 89 ASN A 121 1 33 HELIX 13 13 HIS E 35 SER E 59 1 25 HELIX 14 14 ASP E 69 MET E 83 1 15 HELIX 15 15 LEU E 84 ASN E 87 5 4 HELIX 16 16 GLY E 89 ASN E 121 1 33 HELIX 17 17 HIS F 35 SER F 59 1 25 HELIX 18 18 ASP F 69 MET F 83 1 15 HELIX 19 19 LEU F 84 VAL F 88 5 5 HELIX 20 20 GLY F 89 ASN F 121 1 33 HELIX 21 21 GLY D 33 SER D 58 1 26 HELIX 22 22 ASP D 69 MET D 83 1 15 HELIX 23 23 LEU D 84 ASN D 87 5 4 HELIX 24 24 GLY D 89 ASN D 121 1 33 CRYST1 73.984 78.298 106.795 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013516 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009364 0.00000