HEADER HYDROLASE/HYDROLASE INHIBITOR 29-NOV-13 4NSY TITLE WILD-TYPE LYSOBACTER ENZYMOGENES LYSC ENDOPROTEINASE COVALENTLY TITLE 2 INHIBITED BY TLCK COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSYL ENDOPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYS-C; COMPND 5 EC: 3.4.21.50; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYSOBACTER ENZYMOGENES; SOURCE 3 ORGANISM_TAXID: 69; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, ENDOPROTEINASE, AROMATIC STACK, ATOMIC RESOLUTION, SERINE KEYWDS 2 PROTEASE, CATALYTIC TRIAD, COVALENT INHIBITION, TLCK, HYDROLASE- KEYWDS 3 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.ASZTALOS,A.MULLER,W.HOLKE,H.SOBEK,M.G.RUDOLPH REVDAT 5 20-SEP-23 4NSY 1 REMARK SEQADV LINK REVDAT 4 22-NOV-17 4NSY 1 REMARK REVDAT 3 24-SEP-14 4NSY 1 JRNL REVDAT 2 09-JUL-14 4NSY 1 JRNL REVDAT 1 23-APR-14 4NSY 0 JRNL AUTH P.ASZTALOS,A.MULLER,W.HOLKE,H.SOBEK,M.G.RUDOLPH JRNL TITL ATOMIC RESOLUTION STRUCTURE OF A LYSINE-SPECIFIC JRNL TITL 2 ENDOPROTEINASE FROM LYSOBACTER ENZYMOGENES SUGGESTS A JRNL TITL 3 HYDROXYL GROUP BOUND TO THE OXYANION HOLE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1832 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25004961 JRNL DOI 10.1107/S1399004714008463 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1520) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 182401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 8425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0095 - 3.4168 0.99 6088 335 0.1491 0.1759 REMARK 3 2 3.4168 - 2.7124 0.99 6030 320 0.1476 0.1902 REMARK 3 3 2.7124 - 2.3696 0.99 6032 340 0.1434 0.1974 REMARK 3 4 2.3696 - 2.1530 0.99 6045 329 0.1417 0.1823 REMARK 3 5 2.1530 - 1.9987 0.99 6063 306 0.1380 0.1775 REMARK 3 6 1.9987 - 1.8809 0.99 6006 353 0.1383 0.1896 REMARK 3 7 1.8809 - 1.7867 0.99 6060 331 0.1372 0.1692 REMARK 3 8 1.7867 - 1.7089 0.99 6026 337 0.1388 0.1880 REMARK 3 9 1.7089 - 1.6431 0.99 6037 306 0.1426 0.1945 REMARK 3 10 1.6431 - 1.5864 0.99 6018 326 0.1393 0.1749 REMARK 3 11 1.5864 - 1.5368 0.99 6024 336 0.1394 0.2009 REMARK 3 12 1.5368 - 1.4929 0.98 5984 292 0.1427 0.1943 REMARK 3 13 1.4929 - 1.4536 0.98 5956 299 0.1456 0.2053 REMARK 3 14 1.4536 - 1.4181 0.98 5934 311 0.1573 0.2026 REMARK 3 15 1.4181 - 1.3859 0.97 6003 279 0.1783 0.2502 REMARK 3 16 1.3859 - 1.3564 0.97 5905 311 0.1850 0.2191 REMARK 3 17 1.3564 - 1.3293 0.97 5885 304 0.1851 0.2529 REMARK 3 18 1.3293 - 1.3042 0.95 5795 314 0.1936 0.2342 REMARK 3 19 1.3042 - 1.2809 0.95 5764 305 0.1917 0.2557 REMARK 3 20 1.2809 - 1.2592 0.93 5719 273 0.2092 0.2653 REMARK 3 21 1.2592 - 1.2389 0.94 5705 295 0.2145 0.2766 REMARK 3 22 1.2389 - 1.2198 0.92 5601 300 0.2272 0.2856 REMARK 3 23 1.2198 - 1.2019 0.92 5507 294 0.2369 0.2680 REMARK 3 24 1.2019 - 1.1849 0.90 5571 275 0.2414 0.2779 REMARK 3 25 1.1849 - 1.1689 0.90 5438 272 0.2437 0.3193 REMARK 3 26 1.1689 - 1.1537 0.89 5430 312 0.2684 0.3083 REMARK 3 27 1.1537 - 1.1393 0.89 5383 268 0.2840 0.3207 REMARK 3 28 1.1393 - 1.1256 0.87 5320 308 0.2909 0.3240 REMARK 3 29 1.1256 - 1.1125 0.84 5144 264 0.2983 0.3355 REMARK 3 30 1.1125 - 1.1000 0.79 4780 253 0.3309 0.3659 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4091 REMARK 3 ANGLE : 1.198 5580 REMARK 3 CHIRALITY : 0.070 606 REMARK 3 PLANARITY : 0.006 734 REMARK 3 DIHEDRAL : 13.282 1411 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 182416 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 37.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10728 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2978 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.95205 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.001 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ARB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2, 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 67.90500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 265 REMARK 465 THR A 266 REMARK 465 GLY A 267 REMARK 465 SER A 268 REMARK 465 GLY A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 THR B 266 REMARK 465 GLY B 267 REMARK 465 SER B 268 REMARK 465 GLY B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 262 HG1 THR B 264 1.59 REMARK 500 O HOH B 562 O HOH B 677 2.05 REMARK 500 O HOH B 404 O HOH B 668 2.14 REMARK 500 O HOH B 714 O HOH B 792 2.15 REMARK 500 CL CL A 303 O HOH A 760 2.15 REMARK 500 O HOH B 449 O HOH B 726 2.15 REMARK 500 O HOH B 562 O HOH B 815 2.16 REMARK 500 O HOH A 661 O HOH A 743 2.16 REMARK 500 O HOH A 657 O HOH A 745 2.16 REMARK 500 O HOH A 679 O HOH A 715 2.17 REMARK 500 O HOH A 739 O HOH B 780 2.17 REMARK 500 O HOH B 687 O HOH B 837 2.17 REMARK 500 O HOH A 548 O HOH A 593 2.18 REMARK 500 O HOH B 670 O HOH B 720 2.18 REMARK 500 O HOH B 575 O HOH B 612 2.18 REMARK 500 O HOH A 797 O HOH A 807 2.18 REMARK 500 O HOH A 705 O HOH A 841 2.19 REMARK 500 O HOH A 799 O HOH A 828 2.19 REMARK 500 O HOH A 457 O HOH A 735 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 715 O HOH B 726 1455 2.13 REMARK 500 O HOH A 735 O HOH A 759 1455 2.17 REMARK 500 O HOH A 865 O HOH A 866 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 35 -50.96 -130.49 REMARK 500 VAL A 188 -153.37 -127.97 REMARK 500 TRP B 35 -51.10 -130.54 REMARK 500 VAL B 188 -152.78 -127.98 REMARK 500 HIS B 210 -60.26 -94.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 151 OD1 REMARK 620 2 HOH B 660 O 143.3 REMARK 620 3 HOH B 749 O 88.8 97.6 REMARK 620 4 HOH B 753 O 76.7 73.6 64.8 REMARK 620 5 HOH B 824 O 128.4 86.1 100.4 152.3 REMARK 620 6 HOH B 830 O 69.4 136.9 113.4 146.1 60.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 246 OD2 REMARK 620 2 HOH B 703 O 84.3 REMARK 620 3 HOH B 706 O 68.0 146.6 REMARK 620 4 HOH B 782 O 98.5 92.6 74.3 REMARK 620 5 HOH B 847 O 82.9 88.4 105.5 178.4 REMARK 620 N 1 2 3 4 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-[(2S,3S)-7-AMINO-1-CHLORO-2-HYDROXYHEPTAN-3-YL]-4- REMARK 630 METHYLBENZENESULFONAMIDE (BOUND FORM) REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 2OY A 301 REMARK 630 2OY B 301 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: TSU LYJ 0QE REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2OY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2OY B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NSV RELATED DB: PDB DBREF 4NSY A 1 266 UNP Q7M135 LYSC_LYSEN 1 266 DBREF 4NSY B 1 266 UNP Q7M135 LYSC_LYSEN 1 266 SEQADV 4NSY GLY A 267 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY SER A 268 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY GLY A 269 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY HIS A 270 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY HIS A 271 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY HIS A 272 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY HIS A 273 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY HIS A 274 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY HIS A 275 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY GLY B 267 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY SER B 268 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY GLY B 269 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY HIS B 270 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY HIS B 271 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY HIS B 272 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY HIS B 273 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY HIS B 274 UNP Q7M135 EXPRESSION TAG SEQADV 4NSY HIS B 275 UNP Q7M135 EXPRESSION TAG SEQRES 1 A 275 GLY VAL SER GLY SER CYS ASN ILE ASP VAL VAL CYS PRO SEQRES 2 A 275 GLU GLY ASN GLY HIS ARG ASP VAL ILE ARG SER VAL ALA SEQRES 3 A 275 ALA TYR SER LYS GLN GLY THR MET TRP CYS THR GLY SER SEQRES 4 A 275 LEU VAL ASN ASN SER ALA ASN ASP LYS LYS MET TYR PHE SEQRES 5 A 275 LEU THR ALA ASN HIS CYS GLY MET THR THR ALA ALA ILE SEQRES 6 A 275 ALA SER SER MET VAL VAL TYR TRP ASN TYR GLN ASN SER SEQRES 7 A 275 THR CYS ARG ALA PRO GLY SER SER SER SER GLY ALA ASN SEQRES 8 A 275 GLY ASP GLY SER LEU ALA GLN SER GLN THR GLY ALA VAL SEQRES 9 A 275 VAL ARG ALA THR ASN ALA ALA SER ASP PHE THR LEU LEU SEQRES 10 A 275 GLU LEU ASN THR ALA ALA ASN PRO ALA TYR ASN LEU PHE SEQRES 11 A 275 TRP ALA GLY TRP ASP ARG ARG ASP GLN ASN PHE ALA GLY SEQRES 12 A 275 ALA THR ALA ILE HIS HIS PRO ASN VAL ALA GLU LYS ARG SEQRES 13 A 275 ILE SER HIS SER THR VAL ALA THR GLU ILE SER GLY TYR SEQRES 14 A 275 ASN GLY ALA THR GLY THR SER HIS LEU HIS VAL PHE TRP SEQRES 15 A 275 GLN ALA SER GLY GLY VAL THR GLU PRO GLY SER SER GLY SEQRES 16 A 275 SER PRO ILE TYR SER PRO GLU LYS ARG VAL LEU GLY GLN SEQRES 17 A 275 LEU HIS GLY GLY PRO SER SER CYS SER ALA THR GLY ALA SEQRES 18 A 275 ASP ARG SER ASP TYR TYR GLY ARG VAL PHE THR SER TRP SEQRES 19 A 275 THR GLY GLY GLY THR SER ALA THR ARG LEU SER ASP TRP SEQRES 20 A 275 LEU ASP ALA ALA GLY THR GLY ALA GLN PHE ILE ASP GLY SEQRES 21 A 275 LEU ASP SER THR GLY THR GLY SER GLY HIS HIS HIS HIS SEQRES 22 A 275 HIS HIS SEQRES 1 B 275 GLY VAL SER GLY SER CYS ASN ILE ASP VAL VAL CYS PRO SEQRES 2 B 275 GLU GLY ASN GLY HIS ARG ASP VAL ILE ARG SER VAL ALA SEQRES 3 B 275 ALA TYR SER LYS GLN GLY THR MET TRP CYS THR GLY SER SEQRES 4 B 275 LEU VAL ASN ASN SER ALA ASN ASP LYS LYS MET TYR PHE SEQRES 5 B 275 LEU THR ALA ASN HIS CYS GLY MET THR THR ALA ALA ILE SEQRES 6 B 275 ALA SER SER MET VAL VAL TYR TRP ASN TYR GLN ASN SER SEQRES 7 B 275 THR CYS ARG ALA PRO GLY SER SER SER SER GLY ALA ASN SEQRES 8 B 275 GLY ASP GLY SER LEU ALA GLN SER GLN THR GLY ALA VAL SEQRES 9 B 275 VAL ARG ALA THR ASN ALA ALA SER ASP PHE THR LEU LEU SEQRES 10 B 275 GLU LEU ASN THR ALA ALA ASN PRO ALA TYR ASN LEU PHE SEQRES 11 B 275 TRP ALA GLY TRP ASP ARG ARG ASP GLN ASN PHE ALA GLY SEQRES 12 B 275 ALA THR ALA ILE HIS HIS PRO ASN VAL ALA GLU LYS ARG SEQRES 13 B 275 ILE SER HIS SER THR VAL ALA THR GLU ILE SER GLY TYR SEQRES 14 B 275 ASN GLY ALA THR GLY THR SER HIS LEU HIS VAL PHE TRP SEQRES 15 B 275 GLN ALA SER GLY GLY VAL THR GLU PRO GLY SER SER GLY SEQRES 16 B 275 SER PRO ILE TYR SER PRO GLU LYS ARG VAL LEU GLY GLN SEQRES 17 B 275 LEU HIS GLY GLY PRO SER SER CYS SER ALA THR GLY ALA SEQRES 18 B 275 ASP ARG SER ASP TYR TYR GLY ARG VAL PHE THR SER TRP SEQRES 19 B 275 THR GLY GLY GLY THR SER ALA THR ARG LEU SER ASP TRP SEQRES 20 B 275 LEU ASP ALA ALA GLY THR GLY ALA GLN PHE ILE ASP GLY SEQRES 21 B 275 LEU ASP SER THR GLY THR GLY SER GLY HIS HIS HIS HIS SEQRES 22 B 275 HIS HIS HET 2OY A 301 43 HET CL A 302 1 HET CL A 303 1 HET 2OY B 301 43 HET CA B 302 1 HET CA B 303 1 HETNAM 2OY N-[(2S,3S)-7-AMINO-1-CHLORO-2-HYDROXYHEPTAN-3-YL]-4- HETNAM 2 2OY METHYLBENZENESULFONAMIDE (BOUND FORM) HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETSYN 2OY TOSYLLYSINE CHLOROMETHYL KETONE (BOUND FORM) FORMUL 3 2OY 2(C14 H23 CL N2 O3 S) FORMUL 4 CL 2(CL 1-) FORMUL 7 CA 2(CA 2+) FORMUL 9 HOH *964(H2 O) HELIX 1 1 CYS A 12 ASN A 16 5 5 HELIX 2 2 ASP A 20 ARG A 23 5 4 HELIX 3 3 HIS A 57 GLY A 59 5 3 HELIX 4 4 THR A 62 MET A 69 1 8 HELIX 5 5 ASN A 124 ASN A 128 5 5 HELIX 6 6 HIS A 149 ALA A 153 5 5 HELIX 7 7 GLY A 168 ALA A 172 5 5 HELIX 8 8 THR A 219 ASP A 222 5 4 HELIX 9 9 VAL A 230 GLY A 236 1 7 HELIX 10 10 THR A 239 ARG A 243 5 5 HELIX 11 11 LEU A 244 ASP A 249 1 6 HELIX 12 12 CYS B 12 ASN B 16 5 5 HELIX 13 13 ASP B 20 ARG B 23 5 4 HELIX 14 14 HIS B 57 GLY B 59 5 3 HELIX 15 15 THR B 62 MET B 69 1 8 HELIX 16 16 ASN B 124 ASN B 128 5 5 HELIX 17 17 HIS B 149 ALA B 153 5 5 HELIX 18 18 GLY B 168 ALA B 172 5 5 HELIX 19 19 THR B 219 ASP B 222 5 4 HELIX 20 20 VAL B 230 GLY B 236 1 7 HELIX 21 21 THR B 239 ARG B 243 5 5 HELIX 22 22 LEU B 244 ASP B 249 1 6 SHEET 1 A 8 ILE A 8 ASP A 9 0 SHEET 2 A 8 ARG A 156 SER A 160 -1 O ILE A 157 N ILE A 8 SHEET 3 A 8 ALA A 144 HIS A 148 -1 N ALA A 146 O SER A 158 SHEET 4 A 8 PRO A 197 TYR A 199 -1 O TYR A 199 N THR A 145 SHEET 5 A 8 ARG A 204 GLY A 211 -1 O LEU A 206 N ILE A 198 SHEET 6 A 8 SER A 224 ARG A 229 -1 O TYR A 226 N GLY A 211 SHEET 7 A 8 HIS A 177 PHE A 181 -1 N VAL A 180 O ASP A 225 SHEET 8 A 8 GLU A 165 SER A 167 -1 N GLU A 165 O HIS A 179 SHEET 1 B 7 ILE A 8 ASP A 9 0 SHEET 2 B 7 ARG A 156 SER A 160 -1 O ILE A 157 N ILE A 8 SHEET 3 B 7 ALA A 144 HIS A 148 -1 N ALA A 146 O SER A 158 SHEET 4 B 7 PRO A 197 TYR A 199 -1 O TYR A 199 N THR A 145 SHEET 5 B 7 ARG A 204 GLY A 211 -1 O LEU A 206 N ILE A 198 SHEET 6 B 7 GLY A 133 ASP A 135 1 N GLY A 133 O VAL A 205 SHEET 7 B 7 PHE A 257 ILE A 258 -1 O ILE A 258 N TRP A 134 SHEET 1 C 7 SER A 99 THR A 101 0 SHEET 2 C 7 VAL A 70 TYR A 72 -1 N VAL A 71 O GLN A 100 SHEET 3 C 7 VAL A 25 LYS A 30 -1 N ALA A 27 O TYR A 72 SHEET 4 C 7 THR A 33 LEU A 40 -1 O TRP A 35 N TYR A 28 SHEET 5 C 7 TYR A 51 ALA A 55 -1 O LEU A 53 N SER A 39 SHEET 6 C 7 PHE A 114 LEU A 119 -1 O LEU A 117 N PHE A 52 SHEET 7 C 7 ALA A 103 ASN A 109 -1 N ALA A 107 O LEU A 116 SHEET 1 D 2 PHE A 130 TRP A 131 0 SHEET 2 D 2 LEU A 261 ASP A 262 -1 O LEU A 261 N TRP A 131 SHEET 1 E 8 ILE B 8 ASP B 9 0 SHEET 2 E 8 ARG B 156 SER B 160 -1 O ILE B 157 N ILE B 8 SHEET 3 E 8 ALA B 144 HIS B 148 -1 N ALA B 144 O SER B 160 SHEET 4 E 8 PRO B 197 TYR B 199 -1 O TYR B 199 N THR B 145 SHEET 5 E 8 ARG B 204 GLY B 211 -1 O LEU B 206 N ILE B 198 SHEET 6 E 8 SER B 224 ARG B 229 -1 O TYR B 226 N GLY B 211 SHEET 7 E 8 HIS B 177 PHE B 181 -1 N VAL B 180 O ASP B 225 SHEET 8 E 8 GLU B 165 SER B 167 -1 N GLU B 165 O HIS B 179 SHEET 1 F 7 ILE B 8 ASP B 9 0 SHEET 2 F 7 ARG B 156 SER B 160 -1 O ILE B 157 N ILE B 8 SHEET 3 F 7 ALA B 144 HIS B 148 -1 N ALA B 144 O SER B 160 SHEET 4 F 7 PRO B 197 TYR B 199 -1 O TYR B 199 N THR B 145 SHEET 5 F 7 ARG B 204 GLY B 211 -1 O LEU B 206 N ILE B 198 SHEET 6 F 7 GLY B 133 ASP B 135 1 N GLY B 133 O VAL B 205 SHEET 7 F 7 PHE B 257 ILE B 258 -1 O ILE B 258 N TRP B 134 SHEET 1 G 7 SER B 99 THR B 101 0 SHEET 2 G 7 VAL B 70 TYR B 72 -1 N VAL B 71 O GLN B 100 SHEET 3 G 7 VAL B 25 LYS B 30 -1 N ALA B 27 O TYR B 72 SHEET 4 G 7 THR B 33 LEU B 40 -1 O TRP B 35 N TYR B 28 SHEET 5 G 7 TYR B 51 ALA B 55 -1 O LEU B 53 N SER B 39 SHEET 6 G 7 PHE B 114 LEU B 119 -1 O LEU B 117 N PHE B 52 SHEET 7 G 7 ALA B 103 ASN B 109 -1 N ALA B 107 O LEU B 116 SHEET 1 H 2 PHE B 130 TRP B 131 0 SHEET 2 H 2 LEU B 261 ASP B 262 -1 O LEU B 261 N TRP B 131 SSBOND 1 CYS A 6 CYS A 216 1555 1555 2.06 SSBOND 2 CYS A 12 CYS A 80 1555 1555 2.03 SSBOND 3 CYS A 36 CYS A 58 1555 1555 2.03 SSBOND 4 CYS B 6 CYS B 216 1555 1555 2.06 SSBOND 5 CYS B 12 CYS B 80 1555 1555 2.03 SSBOND 6 CYS B 36 CYS B 58 1555 1555 2.02 LINK NE2 HIS A 57 C8 2OY A 301 1555 1555 1.48 LINK OG SER A 194 C 2OY A 301 1555 1555 1.40 LINK NE2 HIS B 57 C8 2OY B 301 1555 1555 1.47 LINK OG SER B 194 C 2OY B 301 1555 1555 1.40 LINK OD1 ASN B 151 CA CA B 303 1555 1555 2.39 LINK OD2 ASP B 246 CA CA B 302 1555 1555 2.45 LINK CA CA B 302 O HOH B 703 1555 1555 2.48 LINK CA CA B 302 O HOH B 706 1555 1555 2.45 LINK CA CA B 302 O HOH B 782 1555 1555 2.56 LINK CA CA B 302 O HOH B 847 1555 1555 2.56 LINK CA CA B 303 O HOH B 660 1555 1555 2.34 LINK CA CA B 303 O HOH B 749 1555 1555 2.40 LINK CA CA B 303 O HOH B 753 1555 1555 2.52 LINK CA CA B 303 O HOH B 824 1555 1555 3.09 LINK CA CA B 303 O HOH B 830 1555 1555 2.44 SITE 1 AC1 17 HIS A 57 TYR A 169 THR A 189 PRO A 191 SITE 2 AC1 17 GLY A 192 SER A 194 HIS A 210 GLY A 212 SITE 3 AC1 17 SER A 214 ASP A 225 CL A 302 HOH A 545 SITE 4 AC1 17 HOH A 729 ALA B 110 TYR B 169 HIS B 210 SITE 5 AC1 17 HOH B 509 SITE 1 AC2 5 HIS A 210 2OY A 301 HOH A 768 HIS B 210 SITE 2 AC2 5 2OY B 301 SITE 1 AC3 6 ASN A 151 HOH A 760 HOH A 780 HOH A 859 SITE 2 AC3 6 HOH A 860 HOH A 866 SITE 1 AC4 16 ALA A 110 TYR A 169 HIS A 210 CL A 302 SITE 2 AC4 16 HOH A 576 HIS B 57 TYR B 169 THR B 189 SITE 3 AC4 16 GLY B 192 SER B 194 HIS B 210 GLY B 212 SITE 4 AC4 16 SER B 214 ASP B 225 HOH B 468 HOH B 744 SITE 1 AC5 5 ASP B 246 HOH B 703 HOH B 706 HOH B 782 SITE 2 AC5 5 HOH B 847 SITE 1 AC6 6 ASN B 151 HOH B 660 HOH B 749 HOH B 753 SITE 2 AC6 6 HOH B 824 HOH B 830 CRYST1 39.579 135.810 45.587 90.00 97.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025266 0.000000 0.003187 0.00000 SCALE2 0.000000 0.007363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022110 0.00000