HEADER OXIDOREDUCTASE 02-DEC-13 4NTC TITLE CRYSTAL STRUCTURE OF GLIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLIT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 746128; SOURCE 4 STRAIN: DELTAAKUB; SOURCE 5 GENE: GLIT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET43.1 KEYWDS DISULFIDE BOND, EPIPOLYTHIODIOXOPIPERAZINE, GLIOTOXIN, NATURAL SULFUR KEYWDS 2 PRODUCTS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.SCHARF,M.GROLL,A.HABEL,T.HEINEKAMP,C.HERTWECK,A.A.BRAKHAGE, AUTHOR 2 E.M.HUBER REVDAT 2 08-NOV-23 4NTC 1 REMARK SEQADV REVDAT 1 05-MAR-14 4NTC 0 JRNL AUTH D.H.SCHARF,M.GROLL,A.HABEL,T.HEINEKAMP,C.HERTWECK, JRNL AUTH 2 A.A.BRAKHAGE,E.M.HUBER JRNL TITL FLAVOENZYME-CATALYZED FORMATION OF DISULFIDE BONDS IN JRNL TITL 2 NATURAL PRODUCTS JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 53 2221 2014 JRNL REFN ISSN 1433-7851 JRNL PMID 24446392 JRNL DOI 10.1002/ANIE.201309302 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 48627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2559 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3561 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4831 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : -1.82000 REMARK 3 B33 (A**2) : 1.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.627 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.258 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5046 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6881 ; 1.079 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 638 ; 5.039 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;34.368 ;24.155 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 784 ;13.683 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.164 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 778 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3834 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5046 ; 3.076 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 73 ;21.331 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5137 ;13.659 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 325 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): -40.5617 15.5189 -16.0854 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: 0.0548 REMARK 3 T33: 0.0047 T12: -0.0201 REMARK 3 T13: 0.0034 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.3654 L22: 0.0633 REMARK 3 L33: 0.1823 L12: -0.0867 REMARK 3 L13: 0.0616 L23: 0.0022 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: -0.0600 S13: -0.0252 REMARK 3 S21: 0.0216 S22: -0.0076 S23: 0.0113 REMARK 3 S31: -0.0079 S32: -0.0161 S33: -0.0161 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 325 REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): -37.2684 14.7984 -44.8327 REMARK 3 T TENSOR REMARK 3 T11: 0.0110 T22: 0.0434 REMARK 3 T33: 0.0159 T12: 0.0126 REMARK 3 T13: -0.0015 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.2077 L22: 0.0483 REMARK 3 L33: 0.1379 L12: -0.0557 REMARK 3 L13: 0.0039 L23: -0.0061 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 0.0469 S13: -0.0282 REMARK 3 S21: -0.0152 S22: -0.0279 S23: -0.0106 REMARK 3 S31: -0.0162 S32: 0.0043 S33: -0.0131 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4NTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083630. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT. SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51186 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FBS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRI-NA CITRATE, 20% PEG3000, PH REMARK 280 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.89500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.89500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 PRO A 326 REMARK 465 GLU A 327 REMARK 465 PHE A 328 REMARK 465 ARG A 329 REMARK 465 LEU A 330 REMARK 465 ASP A 331 REMARK 465 GLN A 332 REMARK 465 GLU A 333 REMARK 465 LEU A 334 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ILE B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 7 REMARK 465 SER B 8 REMARK 465 ASN B 9 REMARK 465 GLY B 10 REMARK 465 ALA B 11 REMARK 465 PRO B 326 REMARK 465 GLU B 327 REMARK 465 PHE B 328 REMARK 465 ARG B 329 REMARK 465 LEU B 330 REMARK 465 ASP B 331 REMARK 465 GLN B 332 REMARK 465 GLU B 333 REMARK 465 LEU B 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 325 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -3.10 -145.80 REMARK 500 ASN A 100 3.49 59.10 REMARK 500 ASN A 140 52.70 -155.70 REMARK 500 ALA A 168 48.34 -78.16 REMARK 500 ALA A 231 -122.32 46.56 REMARK 500 SER A 241 17.10 -150.89 REMARK 500 ASN B 100 -12.16 54.37 REMARK 500 ASN B 140 56.52 -155.65 REMARK 500 ALA B 231 -124.15 48.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FBS RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF THE OXIDOREDUCTASE FROM AGROBACTERIUM REMARK 900 TUMEFACIENS REMARK 900 RELATED ID: 4NTD RELATED DB: PDB REMARK 900 RELATED ID: 4NTE RELATED DB: PDB DBREF 4NTC A 1 334 UNP Q5MBU7 Q5MBU7_ASPFM 1 334 DBREF 4NTC B 1 334 UNP Q5MBU7 Q5MBU7_ASPFM 1 334 SEQADV 4NTC SER A 0 UNP Q5MBU7 EXPRESSION TAG SEQADV 4NTC SER B 0 UNP Q5MBU7 EXPRESSION TAG SEQRES 1 A 335 SER MET SER ILE GLY LYS LEU LEU SER ASN GLY ALA LEU SEQRES 2 A 335 LEU VAL ASP VAL LEU ILE ILE GLY ALA GLY PRO ALA GLY SEQRES 3 A 335 LEU SER THR ALA THR GLY LEU ALA ARG GLN LEU HIS THR SEQRES 4 A 335 ALA VAL VAL PHE ASP SER GLY VAL TYR ARG ASN ALA LYS SEQRES 5 A 335 THR GLN HIS MET HIS ASN VAL LEU GLY TRP ASP HIS ARG SEQRES 6 A 335 ASN PRO ALA GLU LEU ARG ALA ALA GLY ARG ALA ASP LEU SEQRES 7 A 335 THR THR ARG TYR SER THR ILE GLN PHE GLN ASN SER THR SEQRES 8 A 335 ILE GLU ALA ILE ARG GLN VAL GLU THR ASN GLN LEU PHE SEQRES 9 A 335 GLU ALA ARG ASP ASN GLU GLY HIS SER TRP TYR GLY ARG SEQRES 10 A 335 LYS VAL VAL LEU ALA THR GLY VAL ARG ASP ILE PRO LEU SEQRES 11 A 335 ASP ILE GLU GLY TYR SER GLU CYS TRP ALA ASN GLY ILE SEQRES 12 A 335 TYR HIS CYS LEU PHE CYS ASP GLY TYR GLU GLU ARG GLY SEQRES 13 A 335 GLN GLU THR VAL GLY VAL LEU ALA LEU GLY PRO ILE ALA SEQRES 14 A 335 ASN PRO ALA ARG ALA LEU HIS LEU ALA ARG MET ALA LEU SEQRES 15 A 335 ARG LEU SER GLU SER VAL THR ILE TYR THR ASN GLY ASN SEQRES 16 A 335 GLU GLN LEU ALA LYS GLU ILE GLN GLN ALA ALA GLU GLU SEQRES 17 A 335 SER PRO VAL GLY ALA SER GLY LEU LYS PHE GLU ALA ARG SEQRES 18 A 335 PRO ILE ARG ARG PHE GLU LYS GLY ASP VAL ALA LYS THR SEQRES 19 A 335 VAL ILE VAL HIS LEU GLY GLU SER GLU SER LYS THR GLU SEQRES 20 A 335 GLY PHE LEU VAL TYR ASN PRO GLN THR GLU VAL ASN GLY SEQRES 21 A 335 PRO PHE ALA LYS GLN LEU ALA LEU ASN MET THR GLU GLY SEQRES 22 A 335 GLY ASP ILE LEU THR THR PRO PRO PHE TYR GLU THR SER SEQRES 23 A 335 VAL PRO GLY VAL PHE ALA VAL GLY ASP CYS ALA THR PRO SEQRES 24 A 335 LEU LYS ALA VAL THR PRO ALA VAL SER MET GLY SER LEU SEQRES 25 A 335 ALA ALA GLY GLY LEU VAL ALA GLN LEU GLN ALA GLN ALA SEQRES 26 A 335 LEU PRO GLU PHE ARG LEU ASP GLN GLU LEU SEQRES 1 B 335 SER MET SER ILE GLY LYS LEU LEU SER ASN GLY ALA LEU SEQRES 2 B 335 LEU VAL ASP VAL LEU ILE ILE GLY ALA GLY PRO ALA GLY SEQRES 3 B 335 LEU SER THR ALA THR GLY LEU ALA ARG GLN LEU HIS THR SEQRES 4 B 335 ALA VAL VAL PHE ASP SER GLY VAL TYR ARG ASN ALA LYS SEQRES 5 B 335 THR GLN HIS MET HIS ASN VAL LEU GLY TRP ASP HIS ARG SEQRES 6 B 335 ASN PRO ALA GLU LEU ARG ALA ALA GLY ARG ALA ASP LEU SEQRES 7 B 335 THR THR ARG TYR SER THR ILE GLN PHE GLN ASN SER THR SEQRES 8 B 335 ILE GLU ALA ILE ARG GLN VAL GLU THR ASN GLN LEU PHE SEQRES 9 B 335 GLU ALA ARG ASP ASN GLU GLY HIS SER TRP TYR GLY ARG SEQRES 10 B 335 LYS VAL VAL LEU ALA THR GLY VAL ARG ASP ILE PRO LEU SEQRES 11 B 335 ASP ILE GLU GLY TYR SER GLU CYS TRP ALA ASN GLY ILE SEQRES 12 B 335 TYR HIS CYS LEU PHE CYS ASP GLY TYR GLU GLU ARG GLY SEQRES 13 B 335 GLN GLU THR VAL GLY VAL LEU ALA LEU GLY PRO ILE ALA SEQRES 14 B 335 ASN PRO ALA ARG ALA LEU HIS LEU ALA ARG MET ALA LEU SEQRES 15 B 335 ARG LEU SER GLU SER VAL THR ILE TYR THR ASN GLY ASN SEQRES 16 B 335 GLU GLN LEU ALA LYS GLU ILE GLN GLN ALA ALA GLU GLU SEQRES 17 B 335 SER PRO VAL GLY ALA SER GLY LEU LYS PHE GLU ALA ARG SEQRES 18 B 335 PRO ILE ARG ARG PHE GLU LYS GLY ASP VAL ALA LYS THR SEQRES 19 B 335 VAL ILE VAL HIS LEU GLY GLU SER GLU SER LYS THR GLU SEQRES 20 B 335 GLY PHE LEU VAL TYR ASN PRO GLN THR GLU VAL ASN GLY SEQRES 21 B 335 PRO PHE ALA LYS GLN LEU ALA LEU ASN MET THR GLU GLY SEQRES 22 B 335 GLY ASP ILE LEU THR THR PRO PRO PHE TYR GLU THR SER SEQRES 23 B 335 VAL PRO GLY VAL PHE ALA VAL GLY ASP CYS ALA THR PRO SEQRES 24 B 335 LEU LYS ALA VAL THR PRO ALA VAL SER MET GLY SER LEU SEQRES 25 B 335 ALA ALA GLY GLY LEU VAL ALA GLN LEU GLN ALA GLN ALA SEQRES 26 B 335 LEU PRO GLU PHE ARG LEU ASP GLN GLU LEU HET FAD A 401 53 HET FAD B 401 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *267(H2 O) HELIX 1 1 GLY A 22 GLN A 35 1 14 HELIX 2 2 ASN A 65 ARG A 80 1 16 HELIX 3 3 GLY A 133 TRP A 138 1 6 HELIX 4 4 GLY A 150 ARG A 154 5 5 HELIX 5 5 LEU A 164 ALA A 168 5 5 HELIX 6 6 ASN A 169 LEU A 181 1 13 HELIX 7 7 ASN A 194 SER A 208 1 15 HELIX 8 8 PRO A 260 LEU A 265 1 6 HELIX 9 9 GLY A 293 THR A 297 5 5 HELIX 10 10 ALA A 301 GLN A 323 1 23 HELIX 11 11 GLY B 22 GLN B 35 1 14 HELIX 12 12 ASN B 65 TYR B 81 1 17 HELIX 13 13 GLY B 133 TRP B 138 1 6 HELIX 14 14 GLY B 150 ARG B 154 5 5 HELIX 15 15 LEU B 164 ALA B 168 5 5 HELIX 16 16 ASN B 169 LEU B 181 1 13 HELIX 17 17 ASN B 194 SER B 208 1 15 HELIX 18 18 PRO B 260 LEU B 265 1 6 HELIX 19 19 GLY B 293 THR B 297 5 5 HELIX 20 20 ALA B 301 GLN B 323 1 23 SHEET 1 A 5 LYS A 5 LEU A 6 0 SHEET 2 A 5 LEU A 12 ILE A 19 -1 O LEU A 13 N LYS A 5 SHEET 3 A 5 SER A 112 LEU A 120 1 O VAL A 119 N ILE A 19 SHEET 4 A 5 LEU A 102 ASP A 107 -1 N ALA A 105 O TRP A 113 SHEET 5 A 5 ILE A 91 GLU A 98 -1 N ARG A 95 O GLU A 104 SHEET 1 B 5 ILE A 84 GLN A 87 0 SHEET 2 B 5 ALA A 39 PHE A 42 1 N ALA A 39 O GLN A 85 SHEET 3 B 5 LEU A 12 ILE A 19 1 N ILE A 18 O PHE A 42 SHEET 4 B 5 SER A 112 LEU A 120 1 O VAL A 119 N ILE A 19 SHEET 5 B 5 VAL A 289 ALA A 291 1 O PHE A 290 N LEU A 120 SHEET 1 C 2 VAL A 124 ASP A 126 0 SHEET 2 C 2 THR A 255 VAL A 257 -1 O GLU A 256 N ARG A 125 SHEET 1 D 5 ILE A 142 TYR A 143 0 SHEET 2 D 5 LEU A 249 VAL A 250 1 O LEU A 249 N TYR A 143 SHEET 3 D 5 GLN A 156 LEU A 162 1 N LEU A 162 O VAL A 250 SHEET 4 D 5 SER A 184 TYR A 190 1 O TYR A 190 N VAL A 161 SHEET 5 D 5 LEU A 215 GLU A 218 1 O LYS A 216 N ILE A 189 SHEET 1 E 3 ILE A 222 LYS A 227 0 SHEET 2 E 3 VAL A 234 LEU A 238 -1 O HIS A 237 N ARG A 223 SHEET 3 E 3 GLU A 242 GLU A 246 -1 O LYS A 244 N VAL A 236 SHEET 1 F 6 ILE B 84 GLN B 87 0 SHEET 2 F 6 ALA B 39 PHE B 42 1 N ALA B 39 O GLN B 85 SHEET 3 F 6 LEU B 13 ILE B 19 1 N ILE B 18 O PHE B 42 SHEET 4 F 6 SER B 112 LEU B 120 1 O VAL B 119 N ILE B 19 SHEET 5 F 6 LEU B 102 ASP B 107 -1 N ALA B 105 O TRP B 113 SHEET 6 F 6 ILE B 91 GLU B 98 -1 N GLU B 92 O ARG B 106 SHEET 1 G 5 ILE B 84 GLN B 87 0 SHEET 2 G 5 ALA B 39 PHE B 42 1 N ALA B 39 O GLN B 85 SHEET 3 G 5 LEU B 13 ILE B 19 1 N ILE B 18 O PHE B 42 SHEET 4 G 5 SER B 112 LEU B 120 1 O VAL B 119 N ILE B 19 SHEET 5 G 5 VAL B 289 ALA B 291 1 O PHE B 290 N VAL B 118 SHEET 1 H 2 VAL B 124 ASP B 126 0 SHEET 2 H 2 THR B 255 VAL B 257 -1 O GLU B 256 N ARG B 125 SHEET 1 I 5 ILE B 142 TYR B 143 0 SHEET 2 I 5 LEU B 249 VAL B 250 1 O LEU B 249 N TYR B 143 SHEET 3 I 5 GLN B 156 LEU B 162 1 N LEU B 162 O VAL B 250 SHEET 4 I 5 SER B 184 TYR B 190 1 O TYR B 190 N VAL B 161 SHEET 5 I 5 LEU B 215 GLU B 218 1 O LYS B 216 N ILE B 189 SHEET 1 J 3 ILE B 222 LYS B 227 0 SHEET 2 J 3 VAL B 234 LEU B 238 -1 O ILE B 235 N GLU B 226 SHEET 3 J 3 SER B 243 GLU B 246 -1 O LYS B 244 N VAL B 236 SSBOND 1 CYS A 145 CYS A 148 1555 1555 2.08 SSBOND 2 CYS B 145 CYS B 148 1555 1555 2.14 CISPEP 1 PRO A 279 PRO A 280 0 13.51 CISPEP 2 PRO B 279 PRO B 280 0 13.78 SITE 1 AC1 38 GLY A 20 ALA A 21 GLY A 22 PRO A 23 SITE 2 AC1 38 ALA A 24 ASP A 43 SER A 44 GLY A 45 SITE 3 AC1 38 VAL A 46 TYR A 47 ARG A 48 ASN A 49 SITE 4 AC1 38 THR A 52 MET A 55 HIS A 56 VAL A 58 SITE 5 AC1 38 SER A 89 THR A 90 ILE A 91 ALA A 121 SITE 6 AC1 38 THR A 122 GLY A 123 ASP A 126 HIS A 144 SITE 7 AC1 38 CYS A 148 PHE A 261 GLY A 293 ASP A 294 SITE 8 AC1 38 LYS A 300 ALA A 301 VAL A 302 HOH A 502 SITE 9 AC1 38 HOH A 506 HOH A 510 HOH A 511 HOH A 523 SITE 10 AC1 38 HOH A 540 HOH A 585 SITE 1 AC2 39 GLY B 20 ALA B 21 GLY B 22 PRO B 23 SITE 2 AC2 39 ALA B 24 ASP B 43 SER B 44 GLY B 45 SITE 3 AC2 39 VAL B 46 TYR B 47 ARG B 48 ASN B 49 SITE 4 AC2 39 THR B 52 MET B 55 HIS B 56 VAL B 58 SITE 5 AC2 39 SER B 89 THR B 90 ILE B 91 ALA B 121 SITE 6 AC2 39 THR B 122 GLY B 123 ASP B 126 HIS B 144 SITE 7 AC2 39 CYS B 148 PHE B 261 GLY B 293 ASP B 294 SITE 8 AC2 39 LYS B 300 ALA B 301 VAL B 302 HOH B 501 SITE 9 AC2 39 HOH B 505 HOH B 506 HOH B 525 HOH B 531 SITE 10 AC2 39 HOH B 548 HOH B 570 HOH B 625 CRYST1 81.790 118.180 69.860 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008462 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014314 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.901316 0.404283 0.155524 -72.73806 1 MTRIX2 2 0.419479 0.904181 0.080631 19.84907 1 MTRIX3 2 -0.108021 0.137913 -0.984539 -66.40308 1