HEADER MEMBRANE PROTEIN 02-DEC-13 4NTJ
TITLE STRUCTURE OF THE HUMAN P2Y12 RECEPTOR IN COMPLEX WITH AN
TITLE 2 ANTITHROMBOTIC DRUG
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: P2Y PURINOCEPTOR 12,SOLUBLE CYTOCHROME B562,P2Y
COMPND 3 PURINOCEPTOR 12;
COMPND 4 CHAIN: A;
COMPND 5 SYNONYM: P2Y12,ADP-GLUCOSE RECEPTOR,ADPG-R,P2T(AC),P2Y(AC),P2Y(CYC),
COMPND 6 P2Y12 PLATELET ADP RECEPTOR,P2Y(ADP),SP1999;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES;
COMPND 9 OTHER_DETAILS: CHIMERA PROTEIN OF N-TERMINAL RESIDUES 2-223 FROM
COMPND 10 P2Y12R (P2Y12_HUMAN), SOLUBLE CYTOCHROME B562 (C562_ECOLX), AND C-
COMPND 11 TERMINAL RESIDUES 224-342 FROM P2Y12R (P2Y12_HUMAN).
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606, 562;
SOURCE 5 GENE: P2RY12, HORK3, CYBC;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIROUS;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1
KEYWDS HUMAN P2Y12 RECEPTOR, GPCR NETWORK, MEMBRANE PROTEIN, LIPIDIC CUBIC
KEYWDS 2 PHASE, ANTITHROMBOTIC DRUG, GPCR, PSI-BIOLOGY, STRUCTURAL GENOMICS,
KEYWDS 3 SIGNALING PROTEIN, MEMBRANE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.ZHANG,J.ZHANG,Z.-G.GAO,D.ZHANG,L.ZHU,G.W.HAN,S.M.MOSS,S.PAOLETTA,
AUTHOR 2 E.KISELEV,W.LU,G.FENALTI,W.ZHANG,C.E.MULLER,H.YANG,H.JIANG,
AUTHOR 3 V.CHEREZOV,V.KATRITCH,K.A.JACOBSON,R.C.STEVENS,B.WU,Q.ZHAO,GPCR
AUTHOR 4 NETWORK (GPCR)
REVDAT 6 06-NOV-24 4NTJ 1 REMARK
REVDAT 5 08-NOV-23 4NTJ 1 REMARK
REVDAT 4 22-NOV-17 4NTJ 1 REMARK
REVDAT 3 21-JUN-17 4NTJ 1 COMPND SOURCE
REVDAT 2 28-MAY-14 4NTJ 1 JRNL
REVDAT 1 26-MAR-14 4NTJ 0
JRNL AUTH K.ZHANG,J.ZHANG,Z.-G.GAO,D.ZHANG,L.ZHU,G.W.HAN,S.M.MOSS,
JRNL AUTH 2 S.PAOLETTA,E.KISELEV,W.LU,G.FENALTI,W.ZHANG,C.E.MULLER,
JRNL AUTH 3 H.YANG,H.JIANG,V.CHEREZOV,V.KATRITCH,K.A.JACOBSON,
JRNL AUTH 4 R.C.STEVENS,B.WU,Q.ZHAO
JRNL TITL STRUCTURE OF THE HUMAN P2Y12 RECEPTOR IN COMPLEX WITH AN
JRNL TITL 2 ANTITHROMBOTIC DRUG
JRNL REF NATURE V. 509 115 2014
JRNL REFN ISSN 0028-0836
JRNL PMID 24670650
JRNL DOI 10.1038/NATURE13083
REMARK 2
REMARK 2 RESOLUTION. 2.62 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.0
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.44
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2
REMARK 3 NUMBER OF REFLECTIONS : 19094
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.221
REMARK 3 R VALUE (WORKING SET) : 0.220
REMARK 3 FREE R VALUE : 0.246
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180
REMARK 3 FREE R VALUE TEST SET COUNT : 990
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 10
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.76
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.18
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2378
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2330
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2271
REMARK 3 BIN R VALUE (WORKING SET) : 0.2320
REMARK 3 BIN FREE R VALUE : 0.2567
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 107
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2886
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 127
REMARK 3 SOLVENT ATOMS : 12
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 84.46
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 106.1
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -14.03430
REMARK 3 B22 (A**2) : 14.16750
REMARK 3 B33 (A**2) : -0.13320
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 1.92040
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.549
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.385
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3080 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4190 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1414 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 55 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 435 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3080 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 434 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3584 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.05
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.16
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.16
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|16 - A|312 }
REMARK 3 ORIGIN FOR THE GROUP (A): 13.0719 87.5364 46.9005
REMARK 3 T TENSOR
REMARK 3 T11: -0.1235 T22: -0.3298
REMARK 3 T33: -0.1791 T12: 0.1110
REMARK 3 T13: -0.0508 T23: 0.0404
REMARK 3 L TENSOR
REMARK 3 L11: 2.9964 L22: 5.3271
REMARK 3 L33: 1.9506 L12: -1.6291
REMARK 3 L13: -0.2778 L23: 0.5277
REMARK 3 S TENSOR
REMARK 3 S11: -0.1818 S12: 0.0268 S13: -0.0774
REMARK 3 S21: 0.1630 S22: 0.2222 S23: 0.5350
REMARK 3 S31: 0.1073 S32: -0.0276 S33: -0.0405
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { A|1001 - A|1106 }
REMARK 3 ORIGIN FOR THE GROUP (A): 33.7948 48.4483 13.0903
REMARK 3 T TENSOR
REMARK 3 T11: -0.1463 T22: -0.2704
REMARK 3 T33: -0.2015 T12: -0.0483
REMARK 3 T13: 0.0222 T23: -0.0579
REMARK 3 L TENSOR
REMARK 3 L11: 6.3853 L22: 8.2964
REMARK 3 L33: 6.1819 L12: -0.9788
REMARK 3 L13: 1.5442 L23: 1.5059
REMARK 3 S TENSOR
REMARK 3 S11: 0.0454 S12: 0.1219 S13: -0.3863
REMARK 3 S21: -0.2775 S22: -0.2232 S23: 0.1558
REMARK 3 S31: 0.2717 S32: -0.1292 S33: 0.1778
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THERE ARE SOME UNKNOWN DENSITIES.
REMARK 3 LOCATED NEAR THE SIDE CHAIN OF TYR 32. THEY HAVE NOT BEEN
REMARK 3 MODELLED.
REMARK 4
REMARK 4 4NTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-13.
REMARK 100 THE DEPOSITION ID IS D_1000083637.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 23-MAR-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.0-6.5
REMARK 200 NUMBER OF CRYSTALS USED : 15
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 23-ID-D
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.033
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL
REMARK 200 OPTICS : MIRROR
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19116
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1
REMARK 200 DATA REDUNDANCY : 3.800
REMARK 200 R MERGE (I) : 0.10300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69
REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5
REMARK 200 DATA REDUNDANCY IN SHELL : 3.10
REMARK 200 R MERGE FOR SHELL (I) : 0.95800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 3VW7 (PAR1), PDB ENTRY 1M6T (BRIL)
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 61.91
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05-0.15M AMMONIUM FORMATE, 0.1M
REMARK 280 SODIUM CACODYLATE, PH 6.0-6.5, 25-35% PEG 400, 200M AZD1283,
REMARK 280 LIPIDIC CUBIC PHASE, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.32500
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.21500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.32500
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 78.21500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASP A -8
REMARK 465 TYR A -7
REMARK 465 LYS A -6
REMARK 465 ASP A -5
REMARK 465 ASP A -4
REMARK 465 ASP A -3
REMARK 465 ASP A -2
REMARK 465 GLY A -1
REMARK 465 ALA A 0
REMARK 465 PRO A 1
REMARK 465 GLN A 2
REMARK 465 ALA A 3
REMARK 465 VAL A 4
REMARK 465 ASP A 5
REMARK 465 ASN A 6
REMARK 465 LEU A 7
REMARK 465 THR A 8
REMARK 465 SER A 9
REMARK 465 ALA A 10
REMARK 465 PRO A 11
REMARK 465 GLY A 12
REMARK 465 ASN A 13
REMARK 465 THR A 14
REMARK 465 SER A 15
REMARK 465 GLY A 88
REMARK 465 THR A 89
REMARK 465 GLY A 90
REMARK 465 PRO A 91
REMARK 465 SER A 133
REMARK 465 ASN A 134
REMARK 465 PRO A 135
REMARK 465 THR A 163
REMARK 465 ASN A 164
REMARK 465 ARG A 165
REMARK 465 GLN A 166
REMARK 465 PRO A 167
REMARK 465 ARG A 168
REMARK 465 ASP A 169
REMARK 465 LYS A 170
REMARK 465 ASN A 171
REMARK 465 VAL A 172
REMARK 465 LYS A 173
REMARK 465 LYS A 174
REMARK 465 CYS A 175
REMARK 465 SER A 176
REMARK 465 PHE A 177
REMARK 465 LEU A 178
REMARK 465 ASP A 1050
REMARK 465 LYS A 1051
REMARK 465 SER A 1052
REMARK 465 PRO A 1053
REMARK 465 ASP A 1054
REMARK 465 SER A 1055
REMARK 465 PRO A 1056
REMARK 465 GLU A 1057
REMARK 465 MET A 1058
REMARK 465 LYS A 1059
REMARK 465 PRO A 230
REMARK 465 LEU A 313
REMARK 465 LYS A 314
REMARK 465 CYS A 315
REMARK 465 PRO A 316
REMARK 465 ASN A 317
REMARK 465 SER A 318
REMARK 465 ALA A 319
REMARK 465 THR A 320
REMARK 465 SER A 321
REMARK 465 LEU A 322
REMARK 465 SER A 323
REMARK 465 GLN A 324
REMARK 465 ASP A 325
REMARK 465 ASN A 326
REMARK 465 ARG A 327
REMARK 465 LYS A 328
REMARK 465 LYS A 329
REMARK 465 GLU A 330
REMARK 465 GLN A 331
REMARK 465 ASP A 332
REMARK 465 GLY A 333
REMARK 465 GLY A 334
REMARK 465 ASP A 335
REMARK 465 PRO A 336
REMARK 465 ASN A 337
REMARK 465 GLU A 338
REMARK 465 GLU A 339
REMARK 465 THR A 340
REMARK 465 PRO A 341
REMARK 465 MET A 342
REMARK 465 GLY A 343
REMARK 465 ARG A 344
REMARK 465 PRO A 345
REMARK 465 LEU A 346
REMARK 465 GLU A 347
REMARK 465 VAL A 348
REMARK 465 LEU A 349
REMARK 465 PHE A 350
REMARK 465 GLN A 351
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 56 CG CD CE NZ
REMARK 470 LYS A 86 CG CD CE NZ
REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 131 CG CD CE NZ
REMARK 470 LEU A 138 CG CD1 CD2
REMARK 470 LEU A 139 CG CD1 CD2
REMARK 470 ILE A 161 CG1 CG2 CD1
REMARK 470 LYS A 179 CG CD CE NZ
REMARK 470 GLU A 215 CG CD OE1 OE2
REMARK 470 LEU A1048 CG CD1 CD2
REMARK 470 PHE A1061 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ARG A1062 CG CD NE CZ NH1 NH2
REMARK 470 GLU A1081 CG CD OE1 OE2
REMARK 470 LYS A1085 CG CD CE NZ
REMARK 470 LYS A1095 CE NZ
REMARK 470 TYR A1101 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 LYS A 228 CG CD CE NZ
REMARK 470 ARG A 231 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 232 CG CD CE NZ
REMARK 470 LYS A 233 CG CD CE NZ
REMARK 470 VAL A 236 CG1 CG2
REMARK 470 LYS A 237 NZ
REMARK 470 SER A 262 OG
REMARK 470 GLN A 263 CG CD OE1 NE2
REMARK 470 THR A 264 OG1 CG2
REMARK 470 ARG A 265 CG CD NE CZ NH1 NH2
REMARK 470 VAL A 267 CG1 CG2
REMARK 470 PHE A 268 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 LYS A 303 CG CD CE NZ
REMARK 470 LEU A 309 CG CD1 CD2
REMARK 470 ILE A 310 CG1 CG2 CD1
REMARK 470 MET A 312 CG SD CE
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 VAL A 26 -66.20 -120.04
REMARK 500 LYS A 131 77.57 59.53
REMARK 500 MET A 160 -74.56 -69.04
REMARK 500 ASP A1021 -71.68 -113.65
REMARK 500 THR A1044 79.80 -118.11
REMARK 500 LYS A1083 106.36 -48.21
REMARK 500 LYS A 237 -60.06 -92.25
REMARK 500 PHE A 239 1.63 -63.56
REMARK 500 LEU A 261 54.89 -151.40
REMARK 500 SER A 262 -72.40 -142.69
REMARK 500 ARG A 265 -69.72 74.05
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 OLC A 1204
REMARK 610 OLC A 1205
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZJ A 1201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLR A 1202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLR A 1203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1205
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: GPCR-87 RELATED DB: TARGETTRACK
DBREF 4NTJ A 2 223 UNP Q9H244 P2Y12_HUMAN 2 223
DBREF 4NTJ A 1001 1106 UNP P0ABE7 C562_ECOLX 23 128
DBREF 4NTJ A 224 342 UNP Q9H244 P2Y12_HUMAN 224 342
SEQADV 4NTJ ASP A -8 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ TYR A -7 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ LYS A -6 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ ASP A -5 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ ASP A -4 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ ASP A -3 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ ASP A -2 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ GLY A -1 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ ALA A 0 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ PRO A 1 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ TRP A 1007 UNP P0ABE7 MET 29 ENGINEERED MUTATION
SEQADV 4NTJ ILE A 1102 UNP P0ABE7 HIS 124 ENGINEERED MUTATION
SEQADV 4NTJ LEU A 1106 UNP P0ABE7 ARG 128 ENGINEERED MUTATION
SEQADV 4NTJ ASN A 294 UNP Q9H244 ASP 294 ENGINEERED MUTATION
SEQADV 4NTJ GLY A 343 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ ARG A 344 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ PRO A 345 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ LEU A 346 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ GLU A 347 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ VAL A 348 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ LEU A 349 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ PHE A 350 UNP Q9H244 EXPRESSION TAG
SEQADV 4NTJ GLN A 351 UNP Q9H244 EXPRESSION TAG
SEQRES 1 A 466 ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO GLN ALA VAL
SEQRES 2 A 466 ASP ASN LEU THR SER ALA PRO GLY ASN THR SER LEU CYS
SEQRES 3 A 466 THR ARG ASP TYR LYS ILE THR GLN VAL LEU PHE PRO LEU
SEQRES 4 A 466 LEU TYR THR VAL LEU PHE PHE VAL GLY LEU ILE THR ASN
SEQRES 5 A 466 GLY LEU ALA MET ARG ILE PHE PHE GLN ILE ARG SER LYS
SEQRES 6 A 466 SER ASN PHE ILE ILE PHE LEU LYS ASN THR VAL ILE SER
SEQRES 7 A 466 ASP LEU LEU MET ILE LEU THR PHE PRO PHE LYS ILE LEU
SEQRES 8 A 466 SER ASP ALA LYS LEU GLY THR GLY PRO LEU ARG THR PHE
SEQRES 9 A 466 VAL CYS GLN VAL THR SER VAL ILE PHE TYR PHE THR MET
SEQRES 10 A 466 TYR ILE SER ILE SER PHE LEU GLY LEU ILE THR ILE ASP
SEQRES 11 A 466 ARG TYR GLN LYS THR THR ARG PRO PHE LYS THR SER ASN
SEQRES 12 A 466 PRO LYS ASN LEU LEU GLY ALA LYS ILE LEU SER VAL VAL
SEQRES 13 A 466 ILE TRP ALA PHE MET PHE LEU LEU SER LEU PRO ASN MET
SEQRES 14 A 466 ILE LEU THR ASN ARG GLN PRO ARG ASP LYS ASN VAL LYS
SEQRES 15 A 466 LYS CYS SER PHE LEU LYS SER GLU PHE GLY LEU VAL TRP
SEQRES 16 A 466 HIS GLU ILE VAL ASN TYR ILE CYS GLN VAL ILE PHE TRP
SEQRES 17 A 466 ILE ASN PHE LEU ILE VAL ILE VAL CYS TYR THR LEU ILE
SEQRES 18 A 466 THR LYS GLU LEU TYR ARG SER TYR VAL ARG THR ALA ASP
SEQRES 19 A 466 LEU GLU ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS
SEQRES 20 A 466 VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP
SEQRES 21 A 466 ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN
SEQRES 22 A 466 LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP
SEQRES 23 A 466 SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE
SEQRES 24 A 466 LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN
SEQRES 25 A 466 GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN
SEQRES 26 A 466 LEU LYS THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU
SEQRES 27 A 466 ARG GLY VAL GLY LYS VAL PRO ARG LYS LYS VAL ASN VAL
SEQRES 28 A 466 LYS VAL PHE ILE ILE ILE ALA VAL PHE PHE ILE CYS PHE
SEQRES 29 A 466 VAL PRO PHE HIS PHE ALA ARG ILE PRO TYR THR LEU SER
SEQRES 30 A 466 GLN THR ARG ASP VAL PHE ASP CYS THR ALA GLU ASN THR
SEQRES 31 A 466 LEU PHE TYR VAL LYS GLU SER THR LEU TRP LEU THR SER
SEQRES 32 A 466 LEU ASN ALA CYS LEU ASN PRO PHE ILE TYR PHE PHE LEU
SEQRES 33 A 466 CYS LYS SER PHE ARG ASN SER LEU ILE SER MET LEU LYS
SEQRES 34 A 466 CYS PRO ASN SER ALA THR SER LEU SER GLN ASP ASN ARG
SEQRES 35 A 466 LYS LYS GLU GLN ASP GLY GLY ASP PRO ASN GLU GLU THR
SEQRES 36 A 466 PRO MET GLY ARG PRO LEU GLU VAL LEU PHE GLN
HET AZJ A1201 33
HET CLR A1202 28
HET CLR A1203 28
HET OLC A1204 17
HET OLC A1205 21
HETNAM AZJ ETHYL 6-{4-[(BENZYLSULFONYL)CARBAMOYL]PIPERIDIN-1-YL}-
HETNAM 2 AZJ 5-CYANO-2-METHYLPYRIDINE-3-CARBOXYLATE
HETNAM CLR CHOLESTEROL
HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
HETSYN OLC 1-OLEOYL-R-GLYCEROL
FORMUL 2 AZJ C23 H26 N4 O5 S
FORMUL 3 CLR 2(C27 H46 O)
FORMUL 5 OLC 2(C21 H40 O4)
FORMUL 7 HOH *12(H2 O)
HELIX 1 1 ASP A 20 GLN A 25 1 6
HELIX 2 2 VAL A 26 PHE A 51 1 26
HELIX 3 3 SER A 57 LEU A 75 1 19
HELIX 4 4 THR A 76 ALA A 85 1 10
HELIX 5 5 ARG A 93 ARG A 128 1 36
HELIX 6 6 ASN A 137 ILE A 161 1 25
HELIX 7 7 SER A 180 ALA A 1020 1 64
HELIX 8 8 ASN A 1022 THR A 1044 1 23
HELIX 9 9 PHE A 1061 GLY A 1082 1 22
HELIX 10 10 LYS A 1083 GLN A 1093 1 11
HELIX 11 11 THR A 1096 GLY A 227 1 15
HELIX 12 12 VAL A 234 PHE A 239 1 6
HELIX 13 13 PHE A 239 PHE A 249 1 11
HELIX 14 14 PHE A 249 ILE A 257 1 9
HELIX 15 15 PRO A 258 LEU A 261 5 4
HELIX 16 16 ASP A 269 LEU A 289 1 21
HELIX 17 17 LEU A 289 CYS A 302 1 14
HELIX 18 18 CYS A 302 MET A 312 1 11
SSBOND 1 CYS A 17 CYS A 270 1555 1555 2.04
SITE 1 AC1 14 VAL A 102 TYR A 105 PHE A 106 TYR A 109
SITE 2 AC1 14 SER A 156 ASN A 159 VAL A 190 ASN A 191
SITE 3 AC1 14 CYS A 194 PHE A 252 ARG A 256 TYR A 259
SITE 4 AC1 14 LYS A 280 HOH A1311
SITE 1 AC2 3 LEU A 27 SER A 282 TRP A 285
SITE 1 AC3 7 GLN A 124 LEU A 203 ILE A 206 VAL A 207
SITE 2 AC3 7 THR A 210 LEU A 211 LYS A 214
SITE 1 AC4 2 PRO A 251 ALA A 255
SITE 1 AC5 4 ASN A 58 LEU A 117 ILE A 120 HOH A1312
CRYST1 98.650 156.430 47.770 90.00 111.08 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010137 0.000000 0.003907 0.00000
SCALE2 0.000000 0.006393 0.000000 0.00000
SCALE3 0.000000 0.000000 0.022435 0.00000