HEADER MEMBRANE PROTEIN 02-DEC-13 4NTJ TITLE STRUCTURE OF THE HUMAN P2Y12 RECEPTOR IN COMPLEX WITH AN TITLE 2 ANTITHROMBOTIC DRUG COMPND MOL_ID: 1; COMPND 2 MOLECULE: P2Y PURINOCEPTOR 12,SOLUBLE CYTOCHROME B562,P2Y COMPND 3 PURINOCEPTOR 12; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: P2Y12,ADP-GLUCOSE RECEPTOR,ADPG-R,P2T(AC),P2Y(AC),P2Y(CYC), COMPND 6 P2Y12 PLATELET ADP RECEPTOR,P2Y(ADP),SP1999; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: CHIMERA PROTEIN OF N-TERMINAL RESIDUES 2-223 FROM COMPND 10 P2Y12R (P2Y12_HUMAN), SOLUBLE CYTOCHROME B562 (C562_ECOLX), AND C- COMPND 11 TERMINAL RESIDUES 224-342 FROM P2Y12R (P2Y12_HUMAN). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 562; SOURCE 5 GENE: P2RY12, HORK3, CYBC; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIROUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS HUMAN P2Y12 RECEPTOR, GPCR NETWORK, MEMBRANE PROTEIN, LIPIDIC CUBIC KEYWDS 2 PHASE, ANTITHROMBOTIC DRUG, GPCR, PSI-BIOLOGY, STRUCTURAL GENOMICS, KEYWDS 3 SIGNALING PROTEIN, MEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZHANG,J.ZHANG,Z.-G.GAO,D.ZHANG,L.ZHU,G.W.HAN,S.M.MOSS,S.PAOLETTA, AUTHOR 2 E.KISELEV,W.LU,G.FENALTI,W.ZHANG,C.E.MULLER,H.YANG,H.JIANG, AUTHOR 3 V.CHEREZOV,V.KATRITCH,K.A.JACOBSON,R.C.STEVENS,B.WU,Q.ZHAO,GPCR AUTHOR 4 NETWORK (GPCR) REVDAT 5 08-NOV-23 4NTJ 1 REMARK REVDAT 4 22-NOV-17 4NTJ 1 REMARK REVDAT 3 21-JUN-17 4NTJ 1 COMPND SOURCE REVDAT 2 28-MAY-14 4NTJ 1 JRNL REVDAT 1 26-MAR-14 4NTJ 0 JRNL AUTH K.ZHANG,J.ZHANG,Z.-G.GAO,D.ZHANG,L.ZHU,G.W.HAN,S.M.MOSS, JRNL AUTH 2 S.PAOLETTA,E.KISELEV,W.LU,G.FENALTI,W.ZHANG,C.E.MULLER, JRNL AUTH 3 H.YANG,H.JIANG,V.CHEREZOV,V.KATRITCH,K.A.JACOBSON, JRNL AUTH 4 R.C.STEVENS,B.WU,Q.ZHAO JRNL TITL STRUCTURE OF THE HUMAN P2Y12 RECEPTOR IN COMPLEX WITH AN JRNL TITL 2 ANTITHROMBOTIC DRUG JRNL REF NATURE V. 509 115 2014 JRNL REFN ISSN 0028-0836 JRNL PMID 24670650 JRNL DOI 10.1038/NATURE13083 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 19094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 990 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.18 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2378 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2330 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2271 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE : 0.2567 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 107 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 127 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 106.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.03430 REMARK 3 B22 (A**2) : 14.16750 REMARK 3 B33 (A**2) : -0.13320 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.92040 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.549 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.385 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3080 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4190 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1414 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 55 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 435 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3080 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 434 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3584 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.16 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.16 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|16 - A|312 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.0719 87.5364 46.9005 REMARK 3 T TENSOR REMARK 3 T11: -0.1235 T22: -0.3298 REMARK 3 T33: -0.1791 T12: 0.1110 REMARK 3 T13: -0.0508 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 2.9964 L22: 5.3271 REMARK 3 L33: 1.9506 L12: -1.6291 REMARK 3 L13: -0.2778 L23: 0.5277 REMARK 3 S TENSOR REMARK 3 S11: -0.1818 S12: 0.0268 S13: -0.0774 REMARK 3 S21: 0.1630 S22: 0.2222 S23: 0.5350 REMARK 3 S31: 0.1073 S32: -0.0276 S33: -0.0405 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|1001 - A|1106 } REMARK 3 ORIGIN FOR THE GROUP (A): 33.7948 48.4483 13.0903 REMARK 3 T TENSOR REMARK 3 T11: -0.1463 T22: -0.2704 REMARK 3 T33: -0.2015 T12: -0.0483 REMARK 3 T13: 0.0222 T23: -0.0579 REMARK 3 L TENSOR REMARK 3 L11: 6.3853 L22: 8.2964 REMARK 3 L33: 6.1819 L12: -0.9788 REMARK 3 L13: 1.5442 L23: 1.5059 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: 0.1219 S13: -0.3863 REMARK 3 S21: -0.2775 S22: -0.2232 S23: 0.1558 REMARK 3 S31: 0.2717 S32: -0.1292 S33: 0.1778 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE ARE SOME UNKNOWN DENSITIES. REMARK 3 LOCATED NEAR THE SIDE CHAIN OF TYR 32. THEY HAVE NOT BEEN REMARK 3 MODELLED. REMARK 4 REMARK 4 4NTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 15 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.95800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3VW7 (PAR1), PDB ENTRY 1M6T (BRIL) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05-0.15M AMMONIUM FORMATE, 0.1M REMARK 280 SODIUM CACODYLATE, PH 6.0-6.5, 25-35% PEG 400, 200M AZD1283, REMARK 280 LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.32500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.21500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.32500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 78.21500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -8 REMARK 465 TYR A -7 REMARK 465 LYS A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 PRO A 1 REMARK 465 GLN A 2 REMARK 465 ALA A 3 REMARK 465 VAL A 4 REMARK 465 ASP A 5 REMARK 465 ASN A 6 REMARK 465 LEU A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 GLY A 12 REMARK 465 ASN A 13 REMARK 465 THR A 14 REMARK 465 SER A 15 REMARK 465 GLY A 88 REMARK 465 THR A 89 REMARK 465 GLY A 90 REMARK 465 PRO A 91 REMARK 465 SER A 133 REMARK 465 ASN A 134 REMARK 465 PRO A 135 REMARK 465 THR A 163 REMARK 465 ASN A 164 REMARK 465 ARG A 165 REMARK 465 GLN A 166 REMARK 465 PRO A 167 REMARK 465 ARG A 168 REMARK 465 ASP A 169 REMARK 465 LYS A 170 REMARK 465 ASN A 171 REMARK 465 VAL A 172 REMARK 465 LYS A 173 REMARK 465 LYS A 174 REMARK 465 CYS A 175 REMARK 465 SER A 176 REMARK 465 PHE A 177 REMARK 465 LEU A 178 REMARK 465 ASP A 1050 REMARK 465 LYS A 1051 REMARK 465 SER A 1052 REMARK 465 PRO A 1053 REMARK 465 ASP A 1054 REMARK 465 SER A 1055 REMARK 465 PRO A 1056 REMARK 465 GLU A 1057 REMARK 465 MET A 1058 REMARK 465 LYS A 1059 REMARK 465 PRO A 230 REMARK 465 LEU A 313 REMARK 465 LYS A 314 REMARK 465 CYS A 315 REMARK 465 PRO A 316 REMARK 465 ASN A 317 REMARK 465 SER A 318 REMARK 465 ALA A 319 REMARK 465 THR A 320 REMARK 465 SER A 321 REMARK 465 LEU A 322 REMARK 465 SER A 323 REMARK 465 GLN A 324 REMARK 465 ASP A 325 REMARK 465 ASN A 326 REMARK 465 ARG A 327 REMARK 465 LYS A 328 REMARK 465 LYS A 329 REMARK 465 GLU A 330 REMARK 465 GLN A 331 REMARK 465 ASP A 332 REMARK 465 GLY A 333 REMARK 465 GLY A 334 REMARK 465 ASP A 335 REMARK 465 PRO A 336 REMARK 465 ASN A 337 REMARK 465 GLU A 338 REMARK 465 GLU A 339 REMARK 465 THR A 340 REMARK 465 PRO A 341 REMARK 465 MET A 342 REMARK 465 GLY A 343 REMARK 465 ARG A 344 REMARK 465 PRO A 345 REMARK 465 LEU A 346 REMARK 465 GLU A 347 REMARK 465 VAL A 348 REMARK 465 LEU A 349 REMARK 465 PHE A 350 REMARK 465 GLN A 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 LEU A 138 CG CD1 CD2 REMARK 470 LEU A 139 CG CD1 CD2 REMARK 470 ILE A 161 CG1 CG2 CD1 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLU A 215 CG CD OE1 OE2 REMARK 470 LEU A1048 CG CD1 CD2 REMARK 470 PHE A1061 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A1062 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1081 CG CD OE1 OE2 REMARK 470 LYS A1085 CG CD CE NZ REMARK 470 LYS A1095 CE NZ REMARK 470 TYR A1101 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 ARG A 231 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 VAL A 236 CG1 CG2 REMARK 470 LYS A 237 NZ REMARK 470 SER A 262 OG REMARK 470 GLN A 263 CG CD OE1 NE2 REMARK 470 THR A 264 OG1 CG2 REMARK 470 ARG A 265 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 267 CG1 CG2 REMARK 470 PHE A 268 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 LEU A 309 CG CD1 CD2 REMARK 470 ILE A 310 CG1 CG2 CD1 REMARK 470 MET A 312 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 26 -66.20 -120.04 REMARK 500 LYS A 131 77.57 59.53 REMARK 500 MET A 160 -74.56 -69.04 REMARK 500 ASP A1021 -71.68 -113.65 REMARK 500 THR A1044 79.80 -118.11 REMARK 500 LYS A1083 106.36 -48.21 REMARK 500 LYS A 237 -60.06 -92.25 REMARK 500 PHE A 239 1.63 -63.56 REMARK 500 LEU A 261 54.89 -151.40 REMARK 500 SER A 262 -72.40 -142.69 REMARK 500 ARG A 265 -69.72 74.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 1204 REMARK 610 OLC A 1205 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZJ A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLR A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLR A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GPCR-87 RELATED DB: TARGETTRACK DBREF 4NTJ A 2 223 UNP Q9H244 P2Y12_HUMAN 2 223 DBREF 4NTJ A 1001 1106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 4NTJ A 224 342 UNP Q9H244 P2Y12_HUMAN 224 342 SEQADV 4NTJ ASP A -8 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ TYR A -7 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ LYS A -6 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ ASP A -5 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ ASP A -4 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ ASP A -3 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ ASP A -2 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ GLY A -1 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ ALA A 0 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ PRO A 1 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ TRP A 1007 UNP P0ABE7 MET 29 ENGINEERED MUTATION SEQADV 4NTJ ILE A 1102 UNP P0ABE7 HIS 124 ENGINEERED MUTATION SEQADV 4NTJ LEU A 1106 UNP P0ABE7 ARG 128 ENGINEERED MUTATION SEQADV 4NTJ ASN A 294 UNP Q9H244 ASP 294 ENGINEERED MUTATION SEQADV 4NTJ GLY A 343 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ ARG A 344 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ PRO A 345 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ LEU A 346 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ GLU A 347 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ VAL A 348 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ LEU A 349 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ PHE A 350 UNP Q9H244 EXPRESSION TAG SEQADV 4NTJ GLN A 351 UNP Q9H244 EXPRESSION TAG SEQRES 1 A 466 ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO GLN ALA VAL SEQRES 2 A 466 ASP ASN LEU THR SER ALA PRO GLY ASN THR SER LEU CYS SEQRES 3 A 466 THR ARG ASP TYR LYS ILE THR GLN VAL LEU PHE PRO LEU SEQRES 4 A 466 LEU TYR THR VAL LEU PHE PHE VAL GLY LEU ILE THR ASN SEQRES 5 A 466 GLY LEU ALA MET ARG ILE PHE PHE GLN ILE ARG SER LYS SEQRES 6 A 466 SER ASN PHE ILE ILE PHE LEU LYS ASN THR VAL ILE SER SEQRES 7 A 466 ASP LEU LEU MET ILE LEU THR PHE PRO PHE LYS ILE LEU SEQRES 8 A 466 SER ASP ALA LYS LEU GLY THR GLY PRO LEU ARG THR PHE SEQRES 9 A 466 VAL CYS GLN VAL THR SER VAL ILE PHE TYR PHE THR MET SEQRES 10 A 466 TYR ILE SER ILE SER PHE LEU GLY LEU ILE THR ILE ASP SEQRES 11 A 466 ARG TYR GLN LYS THR THR ARG PRO PHE LYS THR SER ASN SEQRES 12 A 466 PRO LYS ASN LEU LEU GLY ALA LYS ILE LEU SER VAL VAL SEQRES 13 A 466 ILE TRP ALA PHE MET PHE LEU LEU SER LEU PRO ASN MET SEQRES 14 A 466 ILE LEU THR ASN ARG GLN PRO ARG ASP LYS ASN VAL LYS SEQRES 15 A 466 LYS CYS SER PHE LEU LYS SER GLU PHE GLY LEU VAL TRP SEQRES 16 A 466 HIS GLU ILE VAL ASN TYR ILE CYS GLN VAL ILE PHE TRP SEQRES 17 A 466 ILE ASN PHE LEU ILE VAL ILE VAL CYS TYR THR LEU ILE SEQRES 18 A 466 THR LYS GLU LEU TYR ARG SER TYR VAL ARG THR ALA ASP SEQRES 19 A 466 LEU GLU ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS SEQRES 20 A 466 VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP SEQRES 21 A 466 ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN SEQRES 22 A 466 LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP SEQRES 23 A 466 SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE SEQRES 24 A 466 LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN SEQRES 25 A 466 GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN SEQRES 26 A 466 LEU LYS THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU SEQRES 27 A 466 ARG GLY VAL GLY LYS VAL PRO ARG LYS LYS VAL ASN VAL SEQRES 28 A 466 LYS VAL PHE ILE ILE ILE ALA VAL PHE PHE ILE CYS PHE SEQRES 29 A 466 VAL PRO PHE HIS PHE ALA ARG ILE PRO TYR THR LEU SER SEQRES 30 A 466 GLN THR ARG ASP VAL PHE ASP CYS THR ALA GLU ASN THR SEQRES 31 A 466 LEU PHE TYR VAL LYS GLU SER THR LEU TRP LEU THR SER SEQRES 32 A 466 LEU ASN ALA CYS LEU ASN PRO PHE ILE TYR PHE PHE LEU SEQRES 33 A 466 CYS LYS SER PHE ARG ASN SER LEU ILE SER MET LEU LYS SEQRES 34 A 466 CYS PRO ASN SER ALA THR SER LEU SER GLN ASP ASN ARG SEQRES 35 A 466 LYS LYS GLU GLN ASP GLY GLY ASP PRO ASN GLU GLU THR SEQRES 36 A 466 PRO MET GLY ARG PRO LEU GLU VAL LEU PHE GLN HET AZJ A1201 33 HET CLR A1202 28 HET CLR A1203 28 HET OLC A1204 17 HET OLC A1205 21 HETNAM AZJ ETHYL 6-{4-[(BENZYLSULFONYL)CARBAMOYL]PIPERIDIN-1-YL}- HETNAM 2 AZJ 5-CYANO-2-METHYLPYRIDINE-3-CARBOXYLATE HETNAM CLR CHOLESTEROL HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 AZJ C23 H26 N4 O5 S FORMUL 3 CLR 2(C27 H46 O) FORMUL 5 OLC 2(C21 H40 O4) FORMUL 7 HOH *12(H2 O) HELIX 1 1 ASP A 20 GLN A 25 1 6 HELIX 2 2 VAL A 26 PHE A 51 1 26 HELIX 3 3 SER A 57 LEU A 75 1 19 HELIX 4 4 THR A 76 ALA A 85 1 10 HELIX 5 5 ARG A 93 ARG A 128 1 36 HELIX 6 6 ASN A 137 ILE A 161 1 25 HELIX 7 7 SER A 180 ALA A 1020 1 64 HELIX 8 8 ASN A 1022 THR A 1044 1 23 HELIX 9 9 PHE A 1061 GLY A 1082 1 22 HELIX 10 10 LYS A 1083 GLN A 1093 1 11 HELIX 11 11 THR A 1096 GLY A 227 1 15 HELIX 12 12 VAL A 234 PHE A 239 1 6 HELIX 13 13 PHE A 239 PHE A 249 1 11 HELIX 14 14 PHE A 249 ILE A 257 1 9 HELIX 15 15 PRO A 258 LEU A 261 5 4 HELIX 16 16 ASP A 269 LEU A 289 1 21 HELIX 17 17 LEU A 289 CYS A 302 1 14 HELIX 18 18 CYS A 302 MET A 312 1 11 SSBOND 1 CYS A 17 CYS A 270 1555 1555 2.04 SITE 1 AC1 14 VAL A 102 TYR A 105 PHE A 106 TYR A 109 SITE 2 AC1 14 SER A 156 ASN A 159 VAL A 190 ASN A 191 SITE 3 AC1 14 CYS A 194 PHE A 252 ARG A 256 TYR A 259 SITE 4 AC1 14 LYS A 280 HOH A1311 SITE 1 AC2 3 LEU A 27 SER A 282 TRP A 285 SITE 1 AC3 7 GLN A 124 LEU A 203 ILE A 206 VAL A 207 SITE 2 AC3 7 THR A 210 LEU A 211 LYS A 214 SITE 1 AC4 2 PRO A 251 ALA A 255 SITE 1 AC5 4 ASN A 58 LEU A 117 ILE A 120 HOH A1312 CRYST1 98.650 156.430 47.770 90.00 111.08 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010137 0.000000 0.003907 0.00000 SCALE2 0.000000 0.006393 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022435 0.00000