HEADER TRANSFERASE/PEPTIDE 03-DEC-13 4NU1 TITLE CRYSTAL STRUCTURE OF A TRANSITION STATE MIMIC OF THE GSK-3/AXIN TITLE 2 COMPLEX BOUND TO PHOSPHORYLATED N-TERMINAL AUTO-INHIBITORY PS9 TITLE 3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGEN SYNTHASE KINASE-3 BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-383 WITH PHOSPHOYLATED SER9; COMPND 5 SYNONYM: GSK-3 BETA, SERINE/THREONINE-PROTEIN KINASE GSK3B; COMPND 6 EC: 2.7.11.26, 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: AXIN-1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 383-402; COMPND 12 SYNONYM: AXIS INHIBITION PROTEIN 1, HAXIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GSK3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON-PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: AXIN1, AXIN; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON-PLUS RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: MODIFIED PGEX-KG KEYWDS WNT, LRP6, GSK-3, AXIN, KINASE, PRIMED SUBSTRATE, TRANSITION STATE, KEYWDS 2 PHOSPHORYLATED N-TERMINAL AUTO-INHIBITORY PS9 PEPTIDE, TRANSFERASE- KEYWDS 3 PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.L.-H.CHU,J.L.STAMOS,M.D.ENOS,N.SHAH,W.I.WEIS REVDAT 4 20-SEP-23 4NU1 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 4NU1 1 REMARK REVDAT 2 23-APR-14 4NU1 1 JRNL REVDAT 1 26-MAR-14 4NU1 0 JRNL AUTH J.L.STAMOS,M.L.CHU,M.D.ENOS,N.SHAH,W.I.WEIS JRNL TITL STRUCTURAL BASIS OF GSK-3 INHIBITION BY N-TERMINAL JRNL TITL 2 PHOSPHORYLATION AND BY THE WNT RECEPTOR LRP6. JRNL REF ELIFE V. 3 01998 2014 JRNL REFN ESSN 2050-084X JRNL PMID 24642411 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5038 - 4.7801 1.00 2928 155 0.1740 0.2150 REMARK 3 2 4.7801 - 3.7950 1.00 2724 149 0.1442 0.2216 REMARK 3 3 3.7950 - 3.3155 1.00 2683 139 0.1804 0.2189 REMARK 3 4 3.3155 - 3.0125 1.00 2659 120 0.2313 0.3089 REMARK 3 5 3.0125 - 2.7966 1.00 2638 133 0.2653 0.3503 REMARK 3 6 2.7966 - 2.6318 1.00 2614 142 0.2895 0.3268 REMARK 3 7 2.6318 - 2.5000 1.00 2603 136 0.3278 0.3498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3134 REMARK 3 ANGLE : 0.633 4283 REMARK 3 CHIRALITY : 0.026 488 REMARK 3 PLANARITY : 0.004 548 REMARK 3 DIHEDRAL : 9.601 1143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8348 45.0296 -22.8722 REMARK 3 T TENSOR REMARK 3 T11: 1.5215 T22: 1.8291 REMARK 3 T33: 1.5381 T12: -0.2207 REMARK 3 T13: -0.1441 T23: -0.4034 REMARK 3 L TENSOR REMARK 3 L11: 4.0700 L22: 2.0188 REMARK 3 L33: 3.5333 L12: 0.2075 REMARK 3 L13: -3.5485 L23: -0.7114 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: -1.4371 S13: 2.4161 REMARK 3 S21: 1.7672 S22: 1.6975 S23: -2.4243 REMARK 3 S31: 0.2367 S32: 1.4055 S33: -2.0830 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9753 45.5306 2.0608 REMARK 3 T TENSOR REMARK 3 T11: 0.5085 T22: 0.6948 REMARK 3 T33: 0.6010 T12: -0.1223 REMARK 3 T13: 0.1219 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 7.2340 L22: 8.0168 REMARK 3 L33: 3.7390 L12: 2.4148 REMARK 3 L13: -0.8559 L23: -1.3071 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.8073 S13: 0.8497 REMARK 3 S21: 0.4515 S22: -0.1673 S23: 0.1715 REMARK 3 S31: -0.4479 S32: -0.1926 S33: 0.1778 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2004 46.4750 -15.7124 REMARK 3 T TENSOR REMARK 3 T11: 1.1336 T22: 1.5887 REMARK 3 T33: 1.4187 T12: -0.0757 REMARK 3 T13: -0.1690 T23: -0.1366 REMARK 3 L TENSOR REMARK 3 L11: 6.7607 L22: 6.9667 REMARK 3 L33: 3.4499 L12: -2.7828 REMARK 3 L13: -2.4209 L23: -2.8814 REMARK 3 S TENSOR REMARK 3 S11: -0.2277 S12: 0.1884 S13: 0.3387 REMARK 3 S21: 0.5716 S22: -0.7869 S23: -2.0778 REMARK 3 S31: -1.0605 S32: -0.2796 S33: 0.9471 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8898 39.9169 -3.8460 REMARK 3 T TENSOR REMARK 3 T11: 0.4915 T22: 0.6964 REMARK 3 T33: 0.5091 T12: -0.1241 REMARK 3 T13: 0.0537 T23: 0.1036 REMARK 3 L TENSOR REMARK 3 L11: 6.6714 L22: 8.0289 REMARK 3 L33: 6.0872 L12: -1.1806 REMARK 3 L13: -3.4601 L23: 4.8212 REMARK 3 S TENSOR REMARK 3 S11: 0.3703 S12: 0.3048 S13: 0.1961 REMARK 3 S21: 0.4120 S22: -0.5690 S23: 0.8870 REMARK 3 S31: 0.3216 S32: -0.6830 S33: 0.1837 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6552 33.1380 -14.4699 REMARK 3 T TENSOR REMARK 3 T11: 0.5027 T22: 0.4599 REMARK 3 T33: 0.4500 T12: -0.0020 REMARK 3 T13: -0.0468 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 3.3028 L22: 5.1699 REMARK 3 L33: 5.0411 L12: 1.3163 REMARK 3 L13: 0.2598 L23: 0.1389 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: -0.0699 S13: -0.1949 REMARK 3 S21: 0.1277 S22: -0.0291 S23: -0.0089 REMARK 3 S31: 0.4932 S32: -0.3061 S33: 0.0122 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7227 26.7658 -24.9203 REMARK 3 T TENSOR REMARK 3 T11: 0.6002 T22: 0.3717 REMARK 3 T33: 0.5421 T12: 0.0109 REMARK 3 T13: -0.1058 T23: -0.0921 REMARK 3 L TENSOR REMARK 3 L11: 3.1212 L22: 2.4542 REMARK 3 L33: 5.7993 L12: 0.6346 REMARK 3 L13: -0.9354 L23: -1.0383 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: 0.0029 S13: -0.5247 REMARK 3 S21: -0.2537 S22: 0.0185 S23: 0.0285 REMARK 3 S31: 0.9850 S32: 0.0834 S33: -0.0656 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 383 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2446 43.2426 -44.1084 REMARK 3 T TENSOR REMARK 3 T11: 0.8596 T22: 0.5345 REMARK 3 T33: 0.6552 T12: -0.1185 REMARK 3 T13: -0.1028 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 2.1954 L22: 2.5100 REMARK 3 L33: 8.2979 L12: -0.0803 REMARK 3 L13: -2.5389 L23: -3.3941 REMARK 3 S TENSOR REMARK 3 S11: 0.1950 S12: 0.9815 S13: 0.4549 REMARK 3 S21: -0.3637 S22: -0.2142 S23: -0.0483 REMARK 3 S31: -0.7216 S32: 0.0268 S33: -0.0501 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 78 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19922 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.30300 REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 6.77200 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4NM3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 35,000, 20MM TRIS PH7.5, 300MM REMARK 280 NACL, 5% GLYCEROL, 10MM MGCL2, 200UM ATP, AND 5MM DTT, REMARK 280 MICRODIALYSIS, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.51000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 187.02000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 140.26500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 233.77500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.75500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.51000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 187.02000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 233.77500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 140.26500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.75500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 4 REMARK 465 PRO A 5 REMARK 465 GLU A 12 REMARK 465 SER A 13 REMARK 465 CYS A 14 REMARK 465 LYS A 15 REMARK 465 PRO A 16 REMARK 465 VAL A 17 REMARK 465 GLN A 18 REMARK 465 GLN A 19 REMARK 465 PRO A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 ARG A 30 REMARK 465 ASP A 31 REMARK 465 LYS A 32 REMARK 465 ASP A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 120 REMARK 465 GLU A 121 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 GLY B 379 REMARK 465 GLY B 380 REMARK 465 ILE B 381 REMARK 465 LEU B 382 REMARK 465 THR B 402 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 VAL A 28 CG1 CG2 REMARK 470 SER A 29 OG REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 GLN A 46 CG CD OE1 NE2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 VAL A 126 CG1 CG2 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 VAL B 383 CG1 CG2 REMARK 470 LYS B 387 CG CD CE NZ REMARK 470 ARG B 401 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 335 NH2 ARG A 344 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 8 -154.54 -99.61 REMARK 500 ASP A 49 99.08 -60.28 REMARK 500 PHE A 67 -53.95 -125.27 REMARK 500 ASP A 77 -71.60 -74.69 REMARK 500 ASP A 181 35.92 -159.17 REMARK 500 ASP A 200 88.19 60.29 REMARK 500 CYS A 218 153.81 66.76 REMARK 500 CYS A 218 153.87 66.80 REMARK 500 TYR A 221 -25.22 76.53 REMARK 500 PRO A 357 -178.86 -68.33 REMARK 500 ASN A 370 76.49 -159.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 186 OD1 REMARK 620 2 ASP A 200 OD2 85.0 REMARK 620 3 ADP A 405 O1A 92.1 75.9 REMARK 620 4 ADP A 405 O1B 154.7 71.4 73.8 REMARK 620 5 HOH A 576 O 116.3 157.8 96.2 86.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 200 OD2 REMARK 620 2 ASP A 200 OD1 55.0 REMARK 620 3 ADP A 405 O3B 73.6 67.6 REMARK 620 4 HOH A 507 O 92.5 76.0 142.7 REMARK 620 5 HOH A 562 O 123.0 74.7 63.0 100.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF3 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NM0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IS A PEPTIDE INHIBITOR-FREE GSK-3/AXIN COMPLEX REMARK 900 RELATED ID: 4NM3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ITS OWN PHOSPHORYLATED N-TERMINAL REMARK 900 AUTO-INHIBITORY PS9 PEPTIDE BUT WITHOUT ALF3 REMARK 900 RELATED ID: 4NM5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHOSPHORYLATED WNT RECEPTOR LRP6 C- REMARK 900 MOTIF REMARK 900 RELATED ID: 4NM7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHOSPHORYLATED WNT RECEPTOR LRP6 E- REMARK 900 MOTIF DBREF 4NU1 A 1 383 UNP Q9WV60 GSK3B_MOUSE 1 383 DBREF 4NU1 B 383 402 UNP O15169 AXIN1_HUMAN 383 402 SEQADV 4NU1 HIS A 384 UNP Q9WV60 EXPRESSION TAG SEQADV 4NU1 HIS A 385 UNP Q9WV60 EXPRESSION TAG SEQADV 4NU1 HIS A 386 UNP Q9WV60 EXPRESSION TAG SEQADV 4NU1 HIS A 387 UNP Q9WV60 EXPRESSION TAG SEQADV 4NU1 HIS A 388 UNP Q9WV60 EXPRESSION TAG SEQADV 4NU1 HIS A 389 UNP Q9WV60 EXPRESSION TAG SEQADV 4NU1 GLY B 379 UNP O15169 EXPRESSION TAG SEQADV 4NU1 GLY B 380 UNP O15169 EXPRESSION TAG SEQADV 4NU1 ILE B 381 UNP O15169 EXPRESSION TAG SEQADV 4NU1 LEU B 382 UNP O15169 EXPRESSION TAG SEQRES 1 A 389 MET SER GLY ARG PRO ARG THR THR SEP PHE ALA GLU SER SEQRES 2 A 389 CYS LYS PRO VAL GLN GLN PRO SER ALA PHE GLY SER MET SEQRES 3 A 389 LYS VAL SER ARG ASP LYS ASP GLY SER LYS VAL THR THR SEQRES 4 A 389 VAL VAL ALA THR PRO GLY GLN GLY PRO ASP ARG PRO GLN SEQRES 5 A 389 GLU VAL SER TYR THR ASP THR LYS VAL ILE GLY ASN GLY SEQRES 6 A 389 SER PHE GLY VAL VAL TYR GLN ALA LYS LEU CYS ASP SER SEQRES 7 A 389 GLY GLU LEU VAL ALA ILE LYS LYS VAL LEU GLN ASP LYS SEQRES 8 A 389 ARG PHE LYS ASN ARG GLU LEU GLN ILE MET ARG LYS LEU SEQRES 9 A 389 ASP HIS CYS ASN ILE VAL ARG LEU ARG TYR PHE PHE TYR SEQRES 10 A 389 SER SER GLY GLU LYS LYS ASP GLU VAL TYR LEU ASN LEU SEQRES 11 A 389 VAL LEU ASP TYR VAL PRO GLU THR VAL TYR ARG VAL ALA SEQRES 12 A 389 ARG HIS TYR SER ARG ALA LYS GLN THR LEU PRO VAL ILE SEQRES 13 A 389 TYR VAL LYS LEU TYR MET TYR GLN LEU PHE ARG SER LEU SEQRES 14 A 389 ALA TYR ILE HIS SER PHE GLY ILE CYS HIS ARG ASP ILE SEQRES 15 A 389 LYS PRO GLN ASN LEU LEU LEU ASP PRO ASP THR ALA VAL SEQRES 16 A 389 LEU LYS LEU CYS ASP PHE GLY SER ALA LYS GLN LEU VAL SEQRES 17 A 389 ARG GLY GLU PRO ASN VAL SER TYR ILE CYS SER ARG TYR SEQRES 18 A 389 TYR ARG ALA PRO GLU LEU ILE PHE GLY ALA THR ASP TYR SEQRES 19 A 389 THR SER SER ILE ASP VAL TRP SER ALA GLY CYS VAL LEU SEQRES 20 A 389 ALA GLU LEU LEU LEU GLY GLN PRO ILE PHE PRO GLY ASP SEQRES 21 A 389 SER GLY VAL ASP GLN LEU VAL GLU ILE ILE LYS VAL LEU SEQRES 22 A 389 GLY THR PRO THR ARG GLU GLN ILE ARG GLU MET ASN PRO SEQRES 23 A 389 ASN TYR THR GLU PHE LYS PHE PRO GLN ILE LYS ALA HIS SEQRES 24 A 389 PRO TRP THR LYS VAL PHE ARG PRO ARG THR PRO PRO GLU SEQRES 25 A 389 ALA ILE ALA LEU CYS SER ARG LEU LEU GLU TYR THR PRO SEQRES 26 A 389 THR ALA ARG LEU THR PRO LEU GLU ALA CYS ALA HIS SER SEQRES 27 A 389 PHE PHE ASP GLU LEU ARG ASP PRO ASN VAL LYS LEU PRO SEQRES 28 A 389 ASN GLY ARG ASP THR PRO ALA LEU PHE ASN PHE THR THR SEQRES 29 A 389 GLN GLU LEU SER SER ASN PRO PRO LEU ALA THR ILE LEU SEQRES 30 A 389 ILE PRO PRO HIS ALA ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 24 GLY GLY ILE LEU VAL GLU PRO GLN LYS PHE ALA GLU GLU SEQRES 2 B 24 LEU ILE HIS ARG LEU GLU ALA VAL GLN ARG THR MODRES 4NU1 SEP A 9 SER PHOSPHOSERINE HET SEP A 9 10 HET GOL A 401 6 HET GOL A 402 6 HET MG A 403 1 HET MG A 404 1 HET ADP A 405 27 HET AF3 A 406 4 HET NO3 A 407 4 HETNAM SEP PHOSPHOSERINE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM AF3 ALUMINUM FLUORIDE HETNAM NO3 NITRATE ION HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 MG 2(MG 2+) FORMUL 7 ADP C10 H15 N5 O10 P2 FORMUL 8 AF3 AL F3 FORMUL 9 NO3 N O3 1- FORMUL 10 HOH *98(H2 O) HELIX 1 1 ARG A 96 ARG A 102 1 7 HELIX 2 2 VAL A 139 ALA A 149 1 11 HELIX 3 3 PRO A 154 SER A 174 1 21 HELIX 4 4 LYS A 183 GLN A 185 5 3 HELIX 5 5 ALA A 224 PHE A 229 1 6 HELIX 6 6 SER A 236 GLY A 253 1 18 HELIX 7 7 SER A 261 GLY A 274 1 14 HELIX 8 8 THR A 277 ASN A 285 1 9 HELIX 9 9 PRO A 286 THR A 289 5 4 HELIX 10 10 PRO A 300 PHE A 305 1 6 HELIX 11 11 PRO A 310 LEU A 321 1 12 HELIX 12 12 THR A 324 ARG A 328 5 5 HELIX 13 13 THR A 330 ALA A 336 1 7 HELIX 14 14 HIS A 337 PHE A 339 5 3 HELIX 15 15 PHE A 340 ASP A 345 1 6 HELIX 16 16 ASN A 370 PRO A 372 5 3 HELIX 17 17 LEU A 373 ILE A 378 1 6 HELIX 18 18 PRO A 379 ARG A 383 5 5 HELIX 19 19 GLU B 384 ARG B 401 1 18 SHEET 1 A 8 LYS A 27 VAL A 28 0 SHEET 2 A 8 THR A 38 PRO A 44 -1 O THR A 39 N LYS A 27 SHEET 3 A 8 LEU A 112 SER A 118 -1 O PHE A 115 N THR A 43 SHEET 4 A 8 TYR A 127 ASP A 133 -1 O VAL A 131 N TYR A 114 SHEET 5 A 8 LEU A 81 LEU A 88 -1 N ALA A 83 O LEU A 132 SHEET 6 A 8 GLY A 68 LEU A 75 -1 N VAL A 69 O LYS A 86 SHEET 7 A 8 GLN A 52 GLY A 63 -1 N LYS A 60 O GLN A 72 SHEET 8 A 8 THR A 38 PRO A 44 -1 N VAL A 40 O VAL A 54 SHEET 1 B 3 GLU A 137 THR A 138 0 SHEET 2 B 3 LEU A 187 ASP A 190 -1 O LEU A 189 N GLU A 137 SHEET 3 B 3 VAL A 195 LEU A 198 -1 O LYS A 197 N LEU A 188 SHEET 1 C 2 ILE A 177 CYS A 178 0 SHEET 2 C 2 LYS A 205 GLN A 206 -1 O LYS A 205 N CYS A 178 LINK C THR A 8 N SEP A 9 1555 1555 1.33 LINK C SEP A 9 N PHE A 10 1555 1555 1.33 LINK OD1 ASN A 186 MG MG A 403 1555 1555 2.07 LINK OD2 ASP A 200 MG MG A 403 1555 1555 2.31 LINK OD2 ASP A 200 MG MG A 404 1555 1555 2.27 LINK OD1 ASP A 200 MG MG A 404 1555 1555 2.46 LINK MG MG A 403 O1A ADP A 405 1555 1555 2.11 LINK MG MG A 403 O1B ADP A 405 1555 1555 2.49 LINK MG MG A 403 O HOH A 576 1555 1555 2.53 LINK MG MG A 404 O3B ADP A 405 1555 1555 2.41 LINK MG MG A 404 O HOH A 507 1555 1555 2.10 LINK MG MG A 404 O HOH A 562 1555 1555 2.09 SITE 1 AC1 6 MET A 26 TYR A 56 TYR A 71 LYS A 86 SITE 2 AC1 6 SER A 118 ASN A 129 SITE 1 AC2 5 ARG A 144 SER A 147 GLN A 254 PRO A 255 SITE 2 AC2 5 ILE A 256 SITE 1 AC3 5 ASN A 186 ASP A 200 ADP A 405 AF3 A 406 SITE 2 AC3 5 HOH A 576 SITE 1 AC4 6 ASP A 181 ASP A 200 ADP A 405 AF3 A 406 SITE 2 AC4 6 HOH A 507 HOH A 562 SITE 1 AC5 22 GLY A 65 SER A 66 PHE A 67 GLY A 68 SITE 2 AC5 22 VAL A 70 ALA A 83 LYS A 85 ASP A 133 SITE 3 AC5 22 TYR A 134 VAL A 135 THR A 138 ARG A 141 SITE 4 AC5 22 GLN A 185 ASN A 186 LEU A 188 ASP A 200 SITE 5 AC5 22 MG A 403 MG A 404 AF3 A 406 HOH A 512 SITE 6 AC5 22 HOH A 562 HOH A 576 SITE 1 AC6 10 GLY A 65 SER A 66 PHE A 67 ASP A 181 SITE 2 AC6 10 LYS A 183 ASN A 186 ASP A 200 MG A 403 SITE 3 AC6 10 MG A 404 ADP A 405 SITE 1 AC7 5 ASP A 49 PRO A 51 TYR A 146 TYR A 157 SITE 2 AC7 5 TYR A 161 CRYST1 80.997 80.997 280.530 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012346 0.007128 0.000000 0.00000 SCALE2 0.000000 0.014256 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003565 0.00000