data_4NUK # _entry.id 4NUK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4NUK RCSB RCSB083674 WWPDB D_1000083674 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NUI . unspecified PDB 4NUN . unspecified PDB 4NUO . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4NUK _pdbx_database_status.recvd_initial_deposition_date 2013-12-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Hofmann, A.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Probing the equatorial groove of the hookworm protein and vaccine candidate antigen, Na-ASP-2.' _citation.journal_abbrev 'Int.J.Biochem.Cell Biol.' _citation.journal_volume 50 _citation.page_first 146 _citation.page_last 155 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1357-2725 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24631931 _citation.pdbx_database_id_DOI 10.1016/j.biocel.2014.03.003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mason, L.' 1 primary 'Tribolet, L.' 2 primary 'Simon, A.' 3 primary 'von Gnielinski, N.' 4 primary 'Nienaber, L.' 5 primary 'Taylor, P.' 6 primary 'Willis, C.' 7 primary 'Jones, M.K.' 8 primary 'Sternberg, P.W.' 9 primary 'Gasser, R.B.' 10 primary 'Loukas, A.' 11 primary 'Hofmann, A.' 12 # _cell.entry_id 4NUK _cell.length_a 39.921 _cell.length_b 61.958 _cell.length_c 77.082 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NUK _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ancylostoma secreted protein 2' 22652.016 1 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 water nat water 18.015 77 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MMSSITCLVLLSIAAYSKAGCPDNGMSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNN AKQCVFKHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKL GCYVEACSNMCYVVCQYGPAGNMMGKDIYEKGEPCSKCENCDKEKGLCSA ; _entity_poly.pdbx_seq_one_letter_code_can ;MMSSITCLVLLSIAAYSKAGCPDNGMSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNN AKQCVFKHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKL GCYVEACSNMCYVVCQYGPAGNMMGKDIYEKGEPCSKCENCDKEKGLCSA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 MET n 1 3 SER n 1 4 SER n 1 5 ILE n 1 6 THR n 1 7 CYS n 1 8 LEU n 1 9 VAL n 1 10 LEU n 1 11 LEU n 1 12 SER n 1 13 ILE n 1 14 ALA n 1 15 ALA n 1 16 TYR n 1 17 SER n 1 18 LYS n 1 19 ALA n 1 20 GLY n 1 21 CYS n 1 22 PRO n 1 23 ASP n 1 24 ASN n 1 25 GLY n 1 26 MET n 1 27 SER n 1 28 GLU n 1 29 GLU n 1 30 ALA n 1 31 ARG n 1 32 GLN n 1 33 LYS n 1 34 PHE n 1 35 LEU n 1 36 GLU n 1 37 MET n 1 38 HIS n 1 39 ASN n 1 40 SER n 1 41 LEU n 1 42 ARG n 1 43 SER n 1 44 SER n 1 45 VAL n 1 46 ALA n 1 47 LEU n 1 48 GLY n 1 49 GLN n 1 50 ALA n 1 51 LYS n 1 52 ASP n 1 53 GLY n 1 54 ALA n 1 55 GLY n 1 56 GLY n 1 57 ASN n 1 58 ALA n 1 59 PRO n 1 60 LYS n 1 61 ALA n 1 62 ALA n 1 63 LYS n 1 64 MET n 1 65 LYS n 1 66 THR n 1 67 MET n 1 68 ALA n 1 69 TYR n 1 70 ASP n 1 71 CYS n 1 72 GLU n 1 73 VAL n 1 74 GLU n 1 75 LYS n 1 76 THR n 1 77 ALA n 1 78 MET n 1 79 ASN n 1 80 ASN n 1 81 ALA n 1 82 LYS n 1 83 GLN n 1 84 CYS n 1 85 VAL n 1 86 PHE n 1 87 LYS n 1 88 HIS n 1 89 SER n 1 90 GLN n 1 91 PRO n 1 92 ASN n 1 93 GLN n 1 94 ARG n 1 95 LYS n 1 96 GLY n 1 97 LEU n 1 98 GLY n 1 99 GLU n 1 100 ASN n 1 101 ILE n 1 102 PHE n 1 103 MET n 1 104 SER n 1 105 SER n 1 106 ASP n 1 107 SER n 1 108 GLY n 1 109 MET n 1 110 ASP n 1 111 LYS n 1 112 ALA n 1 113 LYS n 1 114 ALA n 1 115 ALA n 1 116 GLU n 1 117 GLN n 1 118 ALA n 1 119 SER n 1 120 LYS n 1 121 ALA n 1 122 TRP n 1 123 PHE n 1 124 GLY n 1 125 GLU n 1 126 LEU n 1 127 ALA n 1 128 GLU n 1 129 LYS n 1 130 GLY n 1 131 VAL n 1 132 GLY n 1 133 GLN n 1 134 ASN n 1 135 LEU n 1 136 LYS n 1 137 LEU n 1 138 THR n 1 139 GLY n 1 140 GLY n 1 141 LEU n 1 142 PHE n 1 143 SER n 1 144 ARG n 1 145 GLY n 1 146 VAL n 1 147 GLY n 1 148 HIS n 1 149 TYR n 1 150 THR n 1 151 GLN n 1 152 MET n 1 153 VAL n 1 154 TRP n 1 155 GLN n 1 156 GLU n 1 157 THR n 1 158 VAL n 1 159 LYS n 1 160 LEU n 1 161 GLY n 1 162 CYS n 1 163 TYR n 1 164 VAL n 1 165 GLU n 1 166 ALA n 1 167 CYS n 1 168 SER n 1 169 ASN n 1 170 MET n 1 171 CYS n 1 172 TYR n 1 173 VAL n 1 174 VAL n 1 175 CYS n 1 176 GLN n 1 177 TYR n 1 178 GLY n 1 179 PRO n 1 180 ALA n 1 181 GLY n 1 182 ASN n 1 183 MET n 1 184 MET n 1 185 GLY n 1 186 LYS n 1 187 ASP n 1 188 ILE n 1 189 TYR n 1 190 GLU n 1 191 LYS n 1 192 GLY n 1 193 GLU n 1 194 PRO n 1 195 CYS n 1 196 SER n 1 197 LYS n 1 198 CYS n 1 199 GLU n 1 200 ASN n 1 201 CYS n 1 202 ASP n 1 203 LYS n 1 204 GLU n 1 205 LYS n 1 206 GLY n 1 207 LEU n 1 208 CYS n 1 209 SER n 1 210 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Human hookworm' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ASP2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Necator americanus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 51031 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code J9ULM6_NECAM _struct_ref.pdbx_db_accession J9ULM6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MMSSITCLVLLSIAAYSKAGCPDNGMSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNN AKQCVFKHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKL GCYVEACSNMCYVVCQYGPAGNMMGKDIYEKGEPCSKCENCDKEKGLCSA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NUK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 210 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession J9ULM6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 210 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 210 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4NUK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_percent_sol 41.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '32% PEG4000, 20mM MOPS, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2012-04-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.95375 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX1' _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' _diffrn_source.pdbx_synchrotron_beamline MX1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.95375 # _reflns.entry_id 4NUK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.5 _reflns.d_resolution_high 2.4 _reflns.number_obs 14334 _reflns.number_all 14393 _reflns.percent_possible_obs 99.6 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.53 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.476 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 12.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4NUK _refine.ls_number_reflns_obs 14334 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.45 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.59 _refine.ls_R_factor_obs 0.1855 _refine.ls_R_factor_R_work 0.1826 _refine.ls_R_factor_R_free 0.2443 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.60 _refine.ls_number_reflns_R_free 361 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 1.4291 _refine.aniso_B[2][2] 1.1534 _refine.aniso_B[3][3] -2.5825 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.346 _refine.solvent_model_param_bsol 25.847 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.83 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'PDB entry 4NUI' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.36 _refine.pdbx_overall_phase_error 22.74 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1444 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 1522 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 24.45 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.008 ? ? 1471 ? 'X-RAY DIFFRACTION' f_angle_d 1.136 ? ? 1957 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 17.782 ? ? 557 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.084 ? ? 198 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 261 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.40 2.5868 2684 0.2234 98.00 0.2648 . . 122 . . . . 'X-RAY DIFFRACTION' . 2.5868 2.8468 2754 0.2226 100.00 0.2823 . . 149 . . . . 'X-RAY DIFFRACTION' . 2.8468 3.2579 2765 0.2184 100.00 0.3003 . . 100 . . . . 'X-RAY DIFFRACTION' . 3.2579 4.1015 2765 0.1684 100.00 0.2418 . . 130 . . . . 'X-RAY DIFFRACTION' . 4.1015 24.4756 2707 0.1428 100.00 0.2022 . . 158 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4NUK _struct.title 'Crystal structure of nickel-bound Na-ASP-2' _struct.pdbx_descriptor 'Ancylostoma secreted protein 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NUK _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'SCP/TAPS, Excretory/secretory product, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 27 ? LEU A 47 ? SER A 27 LEU A 47 1 ? 21 HELX_P HELX_P2 2 ASP A 70 ? LYS A 82 ? ASP A 70 LYS A 82 1 ? 13 HELX_P HELX_P3 3 GLN A 90 ? ARG A 94 ? GLN A 90 ARG A 94 5 ? 5 HELX_P HELX_P4 4 ASP A 110 ? GLY A 124 ? ASP A 110 GLY A 124 1 ? 15 HELX_P HELX_P5 5 GLY A 124 ? LYS A 129 ? GLY A 124 LYS A 129 1 ? 6 HELX_P HELX_P6 6 THR A 138 ? ARG A 144 ? THR A 138 ARG A 144 1 ? 7 HELX_P HELX_P7 7 VAL A 146 ? VAL A 153 ? VAL A 146 VAL A 153 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 71 SG ? ? A CYS 21 A CYS 71 1_555 ? ? ? ? ? ? ? 2.031 ? disulf2 disulf ? ? A CYS 84 SG ? ? ? 1_555 A CYS 167 SG ? ? A CYS 84 A CYS 167 1_555 ? ? ? ? ? ? ? 2.024 ? disulf3 disulf ? ? A CYS 162 SG ? ? ? 1_555 A CYS 175 SG ? ? A CYS 162 A CYS 175 1_555 ? ? ? ? ? ? ? 2.036 ? disulf4 disulf ? ? A CYS 195 SG ? ? ? 1_555 A CYS 201 SG ? ? A CYS 195 A CYS 201 1_555 ? ? ? ? ? ? ? 2.013 ? disulf5 disulf ? ? A CYS 198 SG ? ? ? 1_555 A CYS 208 SG ? ? A CYS 198 A CYS 208 1_555 ? ? ? ? ? ? ? 2.043 ? metalc1 metalc ? ? A HIS 88 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 88 A NI 300 1_555 ? ? ? ? ? ? ? 2.274 ? metalc2 metalc ? ? A HIS 148 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 148 A NI 300 1_555 ? ? ? ? ? ? ? 2.453 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 178 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 178 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 179 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 179 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -10.03 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 64 ? LYS A 65 ? MET A 64 LYS A 65 A 2 LEU A 207 ? CYS A 208 ? LEU A 207 CYS A 208 B 1 ALA A 68 ? TYR A 69 ? ALA A 68 TYR A 69 B 2 LYS A 159 ? ALA A 166 ? LYS A 159 ALA A 166 B 3 CYS A 171 ? GLY A 178 ? CYS A 171 GLY A 178 B 4 GLY A 98 ? SER A 104 ? GLY A 98 SER A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MET A 64 ? N MET A 64 O CYS A 208 ? O CYS A 208 B 1 2 N ALA A 68 ? N ALA A 68 O LEU A 160 ? O LEU A 160 B 2 3 N GLY A 161 ? N GLY A 161 O GLN A 176 ? O GLN A 176 B 3 4 O CYS A 171 ? O CYS A 171 N SER A 104 ? N SER A 104 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE NI A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HIS A 88 ? HIS A 88 . ? 1_555 ? 2 AC1 2 HIS A 148 ? HIS A 148 . ? 1_555 ? # _database_PDB_matrix.entry_id 4NUK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4NUK _atom_sites.fract_transf_matrix[1][1] 0.025049 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016140 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012973 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 MET 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 ILE 5 5 ? ? ? A . n A 1 6 THR 6 6 ? ? ? A . n A 1 7 CYS 7 7 ? ? ? A . n A 1 8 LEU 8 8 ? ? ? A . n A 1 9 VAL 9 9 ? ? ? A . n A 1 10 LEU 10 10 ? ? ? A . n A 1 11 LEU 11 11 ? ? ? A . n A 1 12 SER 12 12 ? ? ? A . n A 1 13 ILE 13 13 ? ? ? A . n A 1 14 ALA 14 14 ? ? ? A . n A 1 15 ALA 15 15 ? ? ? A . n A 1 16 TYR 16 16 ? ? ? A . n A 1 17 SER 17 17 ? ? ? A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 MET 26 26 26 MET MET A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 MET 37 37 37 MET MET A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 MET 64 64 64 MET MET A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 MET 67 67 67 MET MET A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 CYS 71 71 71 CYS CYS A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 MET 78 78 78 MET MET A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 CYS 84 84 84 CYS CYS A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 MET 103 103 103 MET MET A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 MET 109 109 109 MET MET A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 TRP 122 122 122 TRP TRP A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 THR 138 138 138 THR THR A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 HIS 148 148 148 HIS HIS A . n A 1 149 TYR 149 149 149 TYR TYR A . n A 1 150 THR 150 150 150 THR THR A . n A 1 151 GLN 151 151 151 GLN GLN A . n A 1 152 MET 152 152 152 MET MET A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 TRP 154 154 154 TRP TRP A . n A 1 155 GLN 155 155 155 GLN GLN A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 THR 157 157 157 THR THR A . n A 1 158 VAL 158 158 158 VAL VAL A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 CYS 162 162 162 CYS CYS A . n A 1 163 TYR 163 163 163 TYR TYR A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 CYS 167 167 167 CYS CYS A . n A 1 168 SER 168 168 168 SER SER A . n A 1 169 ASN 169 169 169 ASN ASN A . n A 1 170 MET 170 170 170 MET MET A . n A 1 171 CYS 171 171 171 CYS CYS A . n A 1 172 TYR 172 172 172 TYR TYR A . n A 1 173 VAL 173 173 173 VAL VAL A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 CYS 175 175 175 CYS CYS A . n A 1 176 GLN 176 176 176 GLN GLN A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 PRO 179 179 179 PRO PRO A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 GLY 181 181 181 GLY GLY A . n A 1 182 ASN 182 182 182 ASN ASN A . n A 1 183 MET 183 183 183 MET MET A . n A 1 184 MET 184 184 184 MET MET A . n A 1 185 GLY 185 185 185 GLY GLY A . n A 1 186 LYS 186 186 186 LYS LYS A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 ILE 188 188 188 ILE ILE A . n A 1 189 TYR 189 189 189 TYR TYR A . n A 1 190 GLU 190 190 190 GLU GLU A . n A 1 191 LYS 191 191 191 LYS LYS A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 GLU 193 193 193 GLU GLU A . n A 1 194 PRO 194 194 194 PRO PRO A . n A 1 195 CYS 195 195 195 CYS CYS A . n A 1 196 SER 196 196 196 SER SER A . n A 1 197 LYS 197 197 197 LYS LYS A . n A 1 198 CYS 198 198 198 CYS CYS A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 CYS 201 201 201 CYS CYS A . n A 1 202 ASP 202 202 202 ASP ASP A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 GLU 204 204 204 GLU GLU A . n A 1 205 LYS 205 205 205 LYS LYS A . n A 1 206 GLY 206 206 206 GLY GLY A . n A 1 207 LEU 207 207 207 LEU LEU A . n A 1 208 CYS 208 208 208 CYS CYS A . n A 1 209 SER 209 209 209 SER SER A . n A 1 210 ALA 210 210 210 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id NE2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id HIS _pdbx_struct_conn_angle.ptnr1_label_seq_id 88 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr1_auth_seq_id 88 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NI _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id NI _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id NI _pdbx_struct_conn_angle.ptnr2_auth_seq_id 300 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id NE2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id HIS _pdbx_struct_conn_angle.ptnr3_label_seq_id 148 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr3_auth_seq_id 148 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 100.0 _pdbx_struct_conn_angle.value_esd ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2014-05-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHENIX 'model building' . ? 2 PHASER phasing . ? 3 PHENIX refinement '(phenix.refine: 1.6.4_486)' ? 4 XDS 'data reduction' . ? 5 SCALA 'data scaling' . ? 6 PHENIX phasing . ? 7 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 406 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 441 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_454 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 19 ? ? 110.80 130.54 2 1 LYS A 63 ? ? -155.52 61.96 3 1 ARG A 94 ? ? -160.54 55.90 4 1 VAL A 131 ? ? -132.30 -59.72 5 1 CYS A 195 ? ? 68.98 -17.79 6 1 GLU A 199 ? ? -29.71 -80.78 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LYS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 18 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ALA _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 19 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 138.34 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 18 ? CG ? A LYS 18 CG 2 1 Y 0 A LYS 18 ? CD ? A LYS 18 CD 3 1 Y 0 A LYS 18 ? CE ? A LYS 18 CE 4 1 Y 0 A LYS 18 ? NZ ? A LYS 18 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A MET 2 ? A MET 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A ILE 5 ? A ILE 5 6 1 Y 1 A THR 6 ? A THR 6 7 1 Y 1 A CYS 7 ? A CYS 7 8 1 Y 1 A LEU 8 ? A LEU 8 9 1 Y 1 A VAL 9 ? A VAL 9 10 1 Y 1 A LEU 10 ? A LEU 10 11 1 Y 1 A LEU 11 ? A LEU 11 12 1 Y 1 A SER 12 ? A SER 12 13 1 Y 1 A ILE 13 ? A ILE 13 14 1 Y 1 A ALA 14 ? A ALA 14 15 1 Y 1 A ALA 15 ? A ALA 15 16 1 Y 1 A TYR 16 ? A TYR 16 17 1 Y 1 A SER 17 ? A SER 17 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 300 300 NI NI A . C 3 HOH 1 401 1 HOH HOH A . C 3 HOH 2 402 2 HOH HOH A . C 3 HOH 3 403 3 HOH HOH A . C 3 HOH 4 404 4 HOH HOH A . C 3 HOH 5 405 5 HOH HOH A . C 3 HOH 6 406 6 HOH HOH A . C 3 HOH 7 407 7 HOH HOH A . C 3 HOH 8 408 8 HOH HOH A . C 3 HOH 9 409 9 HOH HOH A . C 3 HOH 10 410 10 HOH HOH A . C 3 HOH 11 411 11 HOH HOH A . C 3 HOH 12 412 12 HOH HOH A . C 3 HOH 13 413 13 HOH HOH A . C 3 HOH 14 414 14 HOH HOH A . C 3 HOH 15 415 15 HOH HOH A . C 3 HOH 16 416 16 HOH HOH A . C 3 HOH 17 417 17 HOH HOH A . C 3 HOH 18 418 18 HOH HOH A . C 3 HOH 19 419 19 HOH HOH A . C 3 HOH 20 420 20 HOH HOH A . C 3 HOH 21 421 21 HOH HOH A . C 3 HOH 22 422 23 HOH HOH A . C 3 HOH 23 423 24 HOH HOH A . C 3 HOH 24 424 25 HOH HOH A . C 3 HOH 25 425 26 HOH HOH A . C 3 HOH 26 426 27 HOH HOH A . C 3 HOH 27 427 29 HOH HOH A . C 3 HOH 28 428 30 HOH HOH A . C 3 HOH 29 429 31 HOH HOH A . C 3 HOH 30 430 32 HOH HOH A . C 3 HOH 31 431 33 HOH HOH A . C 3 HOH 32 432 34 HOH HOH A . C 3 HOH 33 433 35 HOH HOH A . C 3 HOH 34 434 36 HOH HOH A . C 3 HOH 35 435 37 HOH HOH A . C 3 HOH 36 436 38 HOH HOH A . C 3 HOH 37 437 39 HOH HOH A . C 3 HOH 38 438 41 HOH HOH A . C 3 HOH 39 439 42 HOH HOH A . C 3 HOH 40 440 43 HOH HOH A . C 3 HOH 41 441 44 HOH HOH A . C 3 HOH 42 442 45 HOH HOH A . C 3 HOH 43 443 46 HOH HOH A . C 3 HOH 44 444 47 HOH HOH A . C 3 HOH 45 445 48 HOH HOH A . C 3 HOH 46 446 49 HOH HOH A . C 3 HOH 47 447 50 HOH HOH A . C 3 HOH 48 448 51 HOH HOH A . C 3 HOH 49 449 52 HOH HOH A . C 3 HOH 50 450 53 HOH HOH A . C 3 HOH 51 451 55 HOH HOH A . C 3 HOH 52 452 56 HOH HOH A . C 3 HOH 53 453 57 HOH HOH A . C 3 HOH 54 454 58 HOH HOH A . C 3 HOH 55 455 59 HOH HOH A . C 3 HOH 56 456 60 HOH HOH A . C 3 HOH 57 457 61 HOH HOH A . C 3 HOH 58 458 62 HOH HOH A . C 3 HOH 59 459 63 HOH HOH A . C 3 HOH 60 460 64 HOH HOH A . C 3 HOH 61 461 65 HOH HOH A . C 3 HOH 62 462 66 HOH HOH A . C 3 HOH 63 463 67 HOH HOH A . C 3 HOH 64 464 68 HOH HOH A . C 3 HOH 65 465 69 HOH HOH A . C 3 HOH 66 466 70 HOH HOH A . C 3 HOH 67 467 71 HOH HOH A . C 3 HOH 68 468 72 HOH HOH A . C 3 HOH 69 469 73 HOH HOH A . C 3 HOH 70 470 74 HOH HOH A . C 3 HOH 71 471 75 HOH HOH A . C 3 HOH 72 472 76 HOH HOH A . C 3 HOH 73 473 77 HOH HOH A . C 3 HOH 74 474 78 HOH HOH A . C 3 HOH 75 475 79 HOH HOH A . C 3 HOH 76 476 80 HOH HOH A . C 3 HOH 77 477 81 HOH HOH A . #