HEADER CELL ADHESION 03-DEC-13 4NUP TITLE CRYSTAL STRUCTURE OF MOUSE N-CADHERIN EC1-2 WITH AA INSERTION BETWEEN TITLE 2 RESIDUES 2 AND 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-CADHERIN EC1-2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 160-374; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL ADHESION MOLECULE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR X.JIN REVDAT 3 28-FEB-24 4NUP 1 REMARK SEQADV LINK REVDAT 2 22-OCT-14 4NUP 1 JRNL REVDAT 1 24-SEP-14 4NUP 0 JRNL AUTH J.VENDOME,K.FELSOVALYI,H.SONG,Z.YANG,X.JIN,J.BRASCH, JRNL AUTH 2 O.J.HARRISON,G.AHLSEN,F.BAHNA,A.KACZYNSKA,P.S.KATSAMBA, JRNL AUTH 3 D.EDMOND,W.L.HUBBELL,L.SHAPIRO,B.HONIG JRNL TITL STRUCTURAL AND ENERGETIC DETERMINANTS OF ADHESIVE BINDING JRNL TITL 2 SPECIFICITY IN TYPE I CADHERINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E4175 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25253890 JRNL DOI 10.1073/PNAS.1416737111 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 33678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9640 - 6.0836 1.00 2832 172 0.1864 0.2261 REMARK 3 2 6.0836 - 4.8515 1.00 2754 142 0.1489 0.1945 REMARK 3 3 4.8515 - 4.2450 1.00 2720 139 0.1226 0.1555 REMARK 3 4 4.2450 - 3.8599 1.00 2704 135 0.1401 0.2087 REMARK 3 5 3.8599 - 3.5849 1.00 2672 156 0.1572 0.2187 REMARK 3 6 3.5849 - 3.3747 1.00 2674 141 0.1715 0.2413 REMARK 3 7 3.3747 - 3.2064 1.00 2672 143 0.1873 0.2405 REMARK 3 8 3.2064 - 3.0673 1.00 2664 130 0.2004 0.2713 REMARK 3 9 3.0673 - 2.9496 1.00 2679 125 0.2106 0.2538 REMARK 3 10 2.9496 - 2.8481 1.00 2618 150 0.2139 0.3056 REMARK 3 11 2.8481 - 2.7593 1.00 2661 135 0.2291 0.2886 REMARK 3 12 2.7593 - 2.6806 0.88 2326 134 0.2379 0.3121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5151 REMARK 3 ANGLE : 1.260 7059 REMARK 3 CHIRALITY : 0.059 820 REMARK 3 PLANARITY : 0.007 952 REMARK 3 DIHEDRAL : 14.262 1943 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33779 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M MAGNESIUM FORMATE, 0.1M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 87.75200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.89550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 87.75200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.89550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 31 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 454 O HOH B 567 2.00 REMARK 500 O HOH C 468 O HOH C 512 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 43 -85.60 -110.88 REMARK 500 ALA B 43 -86.33 -110.32 REMARK 500 ALA C 43 -87.79 -106.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 67 OD1 83.3 REMARK 620 3 GLU A 69 OE1 76.4 88.7 REMARK 620 4 ASP A 103 OD2 80.2 157.6 102.0 REMARK 620 5 HOH A 437 O 87.4 80.9 161.7 83.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 GLU A 69 OE1 82.8 REMARK 620 3 GLU A 69 OE2 111.1 50.4 REMARK 620 4 ASP A 100 OD1 84.7 117.3 78.9 REMARK 620 5 MET A 101 O 81.5 155.0 154.5 80.5 REMARK 620 6 ASP A 103 OD1 87.4 81.8 123.1 158.1 78.2 REMARK 620 7 ASP A 136 OD1 162.1 104.6 85.7 105.4 85.6 77.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 ASN A 104 O 107.5 REMARK 620 3 ASP A 134 OD2 157.6 84.6 REMARK 620 4 ASP A 134 OD1 144.6 88.4 51.4 REMARK 620 5 ASP A 136 OD2 73.8 83.8 127.2 76.9 REMARK 620 6 ASN A 142 O 81.3 171.1 87.5 83.4 97.8 REMARK 620 7 ASP A 194 OD2 79.5 91.4 81.5 132.7 150.0 91.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE1 REMARK 620 2 ASP B 67 OD1 86.1 REMARK 620 3 GLU B 69 OE1 87.2 87.5 REMARK 620 4 ASP B 103 OD2 98.8 162.9 109.0 REMARK 620 5 HOH B 408 O 169.6 97.3 83.2 80.8 REMARK 620 6 HOH B 415 O 96.7 80.5 167.0 82.7 93.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE2 REMARK 620 2 GLU B 69 OE1 88.3 REMARK 620 3 GLU B 69 OE2 114.0 48.4 REMARK 620 4 ASP B 100 OD1 88.1 121.8 81.4 REMARK 620 5 MET B 101 O 84.0 154.7 155.0 82.1 REMARK 620 6 ASP B 103 OD1 88.2 81.2 121.2 156.5 74.5 REMARK 620 7 ASP B 136 OD1 159.2 100.4 85.4 102.8 80.1 74.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 102 OD1 REMARK 620 2 ASN B 104 O 101.4 REMARK 620 3 ASP B 134 OD2 155.2 87.5 REMARK 620 4 ASP B 134 OD1 148.0 89.1 53.8 REMARK 620 5 ASP B 136 OD2 74.2 80.5 130.4 77.9 REMARK 620 6 ASN B 142 O 79.4 178.5 92.3 89.6 98.5 REMARK 620 7 ASP B 194 OD2 78.5 93.8 77.9 131.5 150.3 87.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 11 OE1 REMARK 620 2 ASP C 67 OD1 79.6 REMARK 620 3 GLU C 69 OE1 74.4 82.0 REMARK 620 4 ASP C 103 OD2 89.7 169.1 96.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 11 OE2 REMARK 620 2 GLU C 69 OE2 108.1 REMARK 620 3 GLU C 69 OE1 81.1 49.2 REMARK 620 4 ASP C 100 OD1 86.1 79.2 117.9 REMARK 620 5 MET C 101 O 86.5 155.5 155.1 82.4 REMARK 620 6 ASP C 103 OD1 89.6 120.0 79.9 160.7 78.6 REMARK 620 7 ASP C 136 OD1 162.8 81.2 95.4 110.2 90.2 73.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 102 OD1 REMARK 620 2 ASN C 104 O 102.8 REMARK 620 3 ASP C 134 OD2 152.1 92.3 REMARK 620 4 ASP C 134 OD1 146.8 93.3 52.7 REMARK 620 5 ASP C 136 OD2 76.9 82.6 128.9 76.7 REMARK 620 6 ASN C 142 O 83.8 172.3 83.4 79.0 95.1 REMARK 620 7 ASP C 194 OD2 75.1 91.2 81.4 134.0 149.2 94.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 119 OE1 REMARK 620 2 ASP C 215 OD1 70.1 REMARK 620 3 HOH C 459 O 72.5 98.7 REMARK 620 4 HOH C 506 O 78.1 72.1 150.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NUM RELATED DB: PDB REMARK 900 RELATED ID: 4NUQ RELATED DB: PDB DBREF 4NUP A -1 215 UNP Q3UIC2 Q3UIC2_MOUSE 160 374 DBREF 4NUP B -1 215 UNP Q3UIC2 Q3UIC2_MOUSE 160 374 DBREF 4NUP C -1 215 UNP Q3UIC2 Q3UIC2_MOUSE 160 374 SEQADV 4NUP ALA A 1 UNP Q3UIC2 INSERTION SEQADV 4NUP ALA A 2 UNP Q3UIC2 INSERTION SEQADV 4NUP ALA B 1 UNP Q3UIC2 INSERTION SEQADV 4NUP ALA B 2 UNP Q3UIC2 INSERTION SEQADV 4NUP ALA C 1 UNP Q3UIC2 INSERTION SEQADV 4NUP ALA C 2 UNP Q3UIC2 INSERTION SEQRES 1 A 217 ASP TRP ALA ALA VAL ILE PRO PRO ILE ASN LEU PRO GLU SEQRES 2 A 217 ASN SER ARG GLY PRO PHE PRO GLN GLU LEU VAL ARG ILE SEQRES 3 A 217 ARG SER ASP ARG ASP LYS ASN LEU SER LEU ARG TYR SER SEQRES 4 A 217 VAL THR GLY PRO GLY ALA ASP GLN PRO PRO THR GLY ILE SEQRES 5 A 217 PHE ILE ILE ASN PRO ILE SER GLY GLN LEU SER VAL THR SEQRES 6 A 217 LYS PRO LEU ASP ARG GLU LEU ILE ALA ARG PHE HIS LEU SEQRES 7 A 217 ARG ALA HIS ALA VAL ASP ILE ASN GLY ASN GLN VAL GLU SEQRES 8 A 217 ASN PRO ILE ASP ILE VAL ILE ASN VAL ILE ASP MET ASN SEQRES 9 A 217 ASP ASN ARG PRO GLU PHE LEU HIS GLN VAL TRP ASN GLY SEQRES 10 A 217 SER VAL PRO GLU GLY SER LYS PRO GLY THR TYR VAL MET SEQRES 11 A 217 THR VAL THR ALA ILE ASP ALA ASP ASP PRO ASN ALA LEU SEQRES 12 A 217 ASN GLY MET LEU ARG TYR ARG ILE LEU SER GLN ALA PRO SEQRES 13 A 217 SER THR PRO SER PRO ASN MET PHE THR ILE ASN ASN GLU SEQRES 14 A 217 THR GLY ASP ILE ILE THR VAL ALA ALA GLY LEU ASP ARG SEQRES 15 A 217 GLU LYS VAL GLN GLN TYR THR LEU ILE ILE GLN ALA THR SEQRES 16 A 217 ASP MET GLU GLY ASN PRO THR TYR GLY LEU SER ASN THR SEQRES 17 A 217 ALA THR ALA VAL ILE THR VAL THR ASP SEQRES 1 B 217 ASP TRP ALA ALA VAL ILE PRO PRO ILE ASN LEU PRO GLU SEQRES 2 B 217 ASN SER ARG GLY PRO PHE PRO GLN GLU LEU VAL ARG ILE SEQRES 3 B 217 ARG SER ASP ARG ASP LYS ASN LEU SER LEU ARG TYR SER SEQRES 4 B 217 VAL THR GLY PRO GLY ALA ASP GLN PRO PRO THR GLY ILE SEQRES 5 B 217 PHE ILE ILE ASN PRO ILE SER GLY GLN LEU SER VAL THR SEQRES 6 B 217 LYS PRO LEU ASP ARG GLU LEU ILE ALA ARG PHE HIS LEU SEQRES 7 B 217 ARG ALA HIS ALA VAL ASP ILE ASN GLY ASN GLN VAL GLU SEQRES 8 B 217 ASN PRO ILE ASP ILE VAL ILE ASN VAL ILE ASP MET ASN SEQRES 9 B 217 ASP ASN ARG PRO GLU PHE LEU HIS GLN VAL TRP ASN GLY SEQRES 10 B 217 SER VAL PRO GLU GLY SER LYS PRO GLY THR TYR VAL MET SEQRES 11 B 217 THR VAL THR ALA ILE ASP ALA ASP ASP PRO ASN ALA LEU SEQRES 12 B 217 ASN GLY MET LEU ARG TYR ARG ILE LEU SER GLN ALA PRO SEQRES 13 B 217 SER THR PRO SER PRO ASN MET PHE THR ILE ASN ASN GLU SEQRES 14 B 217 THR GLY ASP ILE ILE THR VAL ALA ALA GLY LEU ASP ARG SEQRES 15 B 217 GLU LYS VAL GLN GLN TYR THR LEU ILE ILE GLN ALA THR SEQRES 16 B 217 ASP MET GLU GLY ASN PRO THR TYR GLY LEU SER ASN THR SEQRES 17 B 217 ALA THR ALA VAL ILE THR VAL THR ASP SEQRES 1 C 217 ASP TRP ALA ALA VAL ILE PRO PRO ILE ASN LEU PRO GLU SEQRES 2 C 217 ASN SER ARG GLY PRO PHE PRO GLN GLU LEU VAL ARG ILE SEQRES 3 C 217 ARG SER ASP ARG ASP LYS ASN LEU SER LEU ARG TYR SER SEQRES 4 C 217 VAL THR GLY PRO GLY ALA ASP GLN PRO PRO THR GLY ILE SEQRES 5 C 217 PHE ILE ILE ASN PRO ILE SER GLY GLN LEU SER VAL THR SEQRES 6 C 217 LYS PRO LEU ASP ARG GLU LEU ILE ALA ARG PHE HIS LEU SEQRES 7 C 217 ARG ALA HIS ALA VAL ASP ILE ASN GLY ASN GLN VAL GLU SEQRES 8 C 217 ASN PRO ILE ASP ILE VAL ILE ASN VAL ILE ASP MET ASN SEQRES 9 C 217 ASP ASN ARG PRO GLU PHE LEU HIS GLN VAL TRP ASN GLY SEQRES 10 C 217 SER VAL PRO GLU GLY SER LYS PRO GLY THR TYR VAL MET SEQRES 11 C 217 THR VAL THR ALA ILE ASP ALA ASP ASP PRO ASN ALA LEU SEQRES 12 C 217 ASN GLY MET LEU ARG TYR ARG ILE LEU SER GLN ALA PRO SEQRES 13 C 217 SER THR PRO SER PRO ASN MET PHE THR ILE ASN ASN GLU SEQRES 14 C 217 THR GLY ASP ILE ILE THR VAL ALA ALA GLY LEU ASP ARG SEQRES 15 C 217 GLU LYS VAL GLN GLN TYR THR LEU ILE ILE GLN ALA THR SEQRES 16 C 217 ASP MET GLU GLY ASN PRO THR TYR GLY LEU SER ASN THR SEQRES 17 C 217 ALA THR ALA VAL ILE THR VAL THR ASP HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET CA B 301 1 HET CA B 302 1 HET CA B 303 1 HET CA C 301 1 HET CA C 302 1 HET CA C 303 1 HET CA C 304 1 HETNAM CA CALCIUM ION FORMUL 4 CA 10(CA 2+) FORMUL 14 HOH *576(H2 O) HELIX 1 1 SER A 26 ASN A 31 5 6 HELIX 2 2 ALA A 140 MET A 144 5 5 HELIX 3 3 ASP A 194 ASN A 198 1 5 HELIX 4 4 ARG B 28 ASN B 31 5 4 HELIX 5 5 ALA B 140 MET B 144 5 5 HELIX 6 6 ASP B 194 ASN B 198 1 5 HELIX 7 7 SER C 26 ASN C 31 5 6 HELIX 8 8 ALA C 140 MET C 144 5 5 HELIX 9 9 ASP C 194 ASN C 198 1 5 SHEET 1 A 2 TRP A 0 ALA A 1 0 SHEET 2 A 2 ARG B 25 SER B 26 -1 O ARG B 25 N ALA A 1 SHEET 1 B 4 ILE A 7 PRO A 10 0 SHEET 2 B 4 ILE A 92 ILE A 99 1 O ILE A 99 N LEU A 9 SHEET 3 B 4 ARG A 73 ASP A 82 -1 N LEU A 76 O ILE A 94 SHEET 4 B 4 LEU A 34 THR A 39 -1 N SER A 37 O HIS A 79 SHEET 1 C 3 GLN A 19 ARG A 23 0 SHEET 2 C 3 GLN A 59 VAL A 62 -1 O LEU A 60 N VAL A 22 SHEET 3 C 3 PHE A 51 ILE A 53 -1 N ILE A 52 O SER A 61 SHEET 1 D 2 GLU A 107 PHE A 108 0 SHEET 2 D 2 ALA A 132 ILE A 133 -1 O ILE A 133 N GLU A 107 SHEET 1 E 4 VAL A 112 PRO A 118 0 SHEET 2 E 4 SER A 204 THR A 214 1 O VAL A 210 N TRP A 113 SHEET 3 E 4 GLN A 185 THR A 193 -1 N LEU A 188 O ALA A 209 SHEET 4 E 4 ARG A 146 ALA A 153 -1 N ALA A 153 O THR A 187 SHEET 1 F 3 TYR A 126 THR A 129 0 SHEET 2 F 3 ASP A 170 THR A 173 -1 O ILE A 171 N MET A 128 SHEET 3 F 3 PHE A 162 ILE A 164 -1 N THR A 163 O ILE A 172 SHEET 1 G 4 ILE B 7 PRO B 10 0 SHEET 2 G 4 ILE B 92 ILE B 99 1 O ILE B 99 N LEU B 9 SHEET 3 G 4 ARG B 73 VAL B 81 -1 N PHE B 74 O ILE B 96 SHEET 4 G 4 ARG B 35 THR B 39 -1 N THR B 39 O ARG B 77 SHEET 1 H 3 GLN B 19 ARG B 23 0 SHEET 2 H 3 GLN B 59 VAL B 62 -1 O LEU B 60 N VAL B 22 SHEET 3 H 3 PHE B 51 ILE B 53 -1 N ILE B 52 O SER B 61 SHEET 1 I 2 GLU B 107 PHE B 108 0 SHEET 2 I 2 ALA B 132 ILE B 133 -1 O ILE B 133 N GLU B 107 SHEET 1 J 4 VAL B 112 PRO B 118 0 SHEET 2 J 4 SER B 204 THR B 214 1 O THR B 208 N TRP B 113 SHEET 3 J 4 GLN B 185 THR B 193 -1 N TYR B 186 O ILE B 211 SHEET 4 J 4 ARG B 146 ALA B 153 -1 N ARG B 148 O GLN B 191 SHEET 1 K 3 TYR B 126 THR B 129 0 SHEET 2 K 3 ASP B 170 THR B 173 -1 O ILE B 171 N MET B 128 SHEET 3 K 3 PHE B 162 ILE B 164 -1 N THR B 163 O ILE B 172 SHEET 1 L 4 ILE C 7 PRO C 10 0 SHEET 2 L 4 ILE C 92 ILE C 99 1 O ASN C 97 N LEU C 9 SHEET 3 L 4 ARG C 73 VAL C 81 -1 N LEU C 76 O ILE C 94 SHEET 4 L 4 ARG C 35 THR C 39 -1 N SER C 37 O HIS C 79 SHEET 1 M 3 GLN C 19 ARG C 23 0 SHEET 2 M 3 GLN C 59 VAL C 62 -1 O LEU C 60 N VAL C 22 SHEET 3 M 3 PHE C 51 ILE C 53 -1 N ILE C 52 O SER C 61 SHEET 1 N 2 GLU C 107 PHE C 108 0 SHEET 2 N 2 ALA C 132 ILE C 133 -1 O ILE C 133 N GLU C 107 SHEET 1 O 4 VAL C 112 PRO C 118 0 SHEET 2 O 4 SER C 204 THR C 214 1 O VAL C 210 N TRP C 113 SHEET 3 O 4 GLN C 185 THR C 193 -1 N LEU C 188 O ALA C 209 SHEET 4 O 4 ARG C 146 ALA C 153 -1 N ALA C 153 O THR C 187 SHEET 1 P 3 TYR C 126 THR C 129 0 SHEET 2 P 3 ASP C 170 THR C 173 -1 O ILE C 171 N MET C 128 SHEET 3 P 3 PHE C 162 ILE C 164 -1 N THR C 163 O ILE C 172 LINK OE1 GLU A 11 CA CA A 301 1555 1555 2.42 LINK OE2 GLU A 11 CA CA A 302 1555 1555 2.40 LINK OD1 ASP A 67 CA CA A 301 1555 1555 2.24 LINK OE1 GLU A 69 CA CA A 301 1555 1555 2.29 LINK OE1 GLU A 69 CA CA A 302 1555 1555 2.55 LINK OE2 GLU A 69 CA CA A 302 1555 1555 2.57 LINK OD1 ASP A 100 CA CA A 302 1555 1555 2.29 LINK O MET A 101 CA CA A 302 1555 1555 2.53 LINK OD1 ASN A 102 CA CA A 303 1555 1555 2.31 LINK OD2 ASP A 103 CA CA A 301 1555 1555 2.23 LINK OD1 ASP A 103 CA CA A 302 1555 1555 2.30 LINK O ASN A 104 CA CA A 303 1555 1555 2.35 LINK OD2 ASP A 134 CA CA A 303 1555 1555 2.48 LINK OD1 ASP A 134 CA CA A 303 1555 1555 2.56 LINK OD1 ASP A 136 CA CA A 302 1555 1555 2.23 LINK OD2 ASP A 136 CA CA A 303 1555 1555 2.42 LINK O ASN A 142 CA CA A 303 1555 1555 2.29 LINK OD2 ASP A 194 CA CA A 303 1555 1555 2.37 LINK CA CA A 301 O HOH A 437 1555 1555 2.39 LINK OE1 GLU B 11 CA CA B 301 1555 1555 2.36 LINK OE2 GLU B 11 CA CA B 302 1555 1555 2.38 LINK OD1 ASP B 67 CA CA B 301 1555 1555 2.36 LINK OE1 GLU B 69 CA CA B 301 1555 1555 2.25 LINK OE1 GLU B 69 CA CA B 302 1555 1555 2.66 LINK OE2 GLU B 69 CA CA B 302 1555 1555 2.66 LINK OD1 ASP B 100 CA CA B 302 1555 1555 2.26 LINK O MET B 101 CA CA B 302 1555 1555 2.43 LINK OD1 ASN B 102 CA CA B 303 1555 1555 2.30 LINK OD2 ASP B 103 CA CA B 301 1555 1555 2.35 LINK OD1 ASP B 103 CA CA B 302 1555 1555 2.35 LINK O ASN B 104 CA CA B 303 1555 1555 2.33 LINK OD2 ASP B 134 CA CA B 303 1555 1555 2.38 LINK OD1 ASP B 134 CA CA B 303 1555 1555 2.48 LINK OD1 ASP B 136 CA CA B 302 1555 1555 2.41 LINK OD2 ASP B 136 CA CA B 303 1555 1555 2.30 LINK O ASN B 142 CA CA B 303 1555 1555 2.35 LINK OD2 ASP B 194 CA CA B 303 1555 1555 2.47 LINK CA CA B 301 O HOH B 408 1555 1555 2.38 LINK CA CA B 301 O HOH B 415 1555 1555 2.34 LINK OE1 GLU C 11 CA CA C 301 1555 1555 2.44 LINK OE2 GLU C 11 CA CA C 302 1555 1555 2.38 LINK OD1 ASP C 67 CA CA C 301 1555 1555 2.16 LINK OE1 GLU C 69 CA CA C 301 1555 1555 2.36 LINK OE2 GLU C 69 CA CA C 302 1555 1555 2.49 LINK OE1 GLU C 69 CA CA C 302 1555 1555 2.74 LINK OD1 ASP C 100 CA CA C 302 1555 1555 2.31 LINK O MET C 101 CA CA C 302 1555 1555 2.35 LINK OD1 ASN C 102 CA CA C 303 1555 1555 2.38 LINK OD2 ASP C 103 CA CA C 301 1555 1555 2.17 LINK OD1 ASP C 103 CA CA C 302 1555 1555 2.30 LINK O ASN C 104 CA CA C 303 1555 1555 2.28 LINK OE1 GLU C 119 CA CA C 304 1555 1555 2.26 LINK OD2 ASP C 134 CA CA C 303 1555 1555 2.35 LINK OD1 ASP C 134 CA CA C 303 1555 1555 2.52 LINK OD1 ASP C 136 CA CA C 302 1555 1555 2.57 LINK OD2 ASP C 136 CA CA C 303 1555 1555 2.33 LINK O ASN C 142 CA CA C 303 1555 1555 2.37 LINK OD2 ASP C 194 CA CA C 303 1555 1555 2.54 LINK OD1 ASP C 215 CA CA C 304 1555 1555 2.47 LINK CA CA C 304 O HOH C 459 1555 1555 2.48 LINK CA CA C 304 O HOH C 506 1555 1555 2.28 CISPEP 1 GLY A 15 PRO A 16 0 3.46 CISPEP 2 PHE A 17 PRO A 18 0 3.18 CISPEP 3 PRO A 46 PRO A 47 0 0.20 CISPEP 4 ALA A 153 PRO A 154 0 -5.12 CISPEP 5 THR A 156 PRO A 157 0 -0.58 CISPEP 6 GLY B 15 PRO B 16 0 4.95 CISPEP 7 PHE B 17 PRO B 18 0 4.13 CISPEP 8 PRO B 46 PRO B 47 0 -2.24 CISPEP 9 ALA B 153 PRO B 154 0 -3.62 CISPEP 10 THR B 156 PRO B 157 0 -1.66 CISPEP 11 GLY C 15 PRO C 16 0 2.38 CISPEP 12 PHE C 17 PRO C 18 0 4.92 CISPEP 13 PRO C 46 PRO C 47 0 -3.62 CISPEP 14 ALA C 153 PRO C 154 0 -5.47 CISPEP 15 THR C 156 PRO C 157 0 -2.37 SITE 1 AC1 5 GLU A 11 ASP A 67 GLU A 69 ASP A 103 SITE 2 AC1 5 HOH A 437 SITE 1 AC2 6 GLU A 11 GLU A 69 ASP A 100 MET A 101 SITE 2 AC2 6 ASP A 103 ASP A 136 SITE 1 AC3 6 ASN A 102 ASN A 104 ASP A 134 ASP A 136 SITE 2 AC3 6 ASN A 142 ASP A 194 SITE 1 AC4 6 GLU B 11 ASP B 67 GLU B 69 ASP B 103 SITE 2 AC4 6 HOH B 408 HOH B 415 SITE 1 AC5 6 GLU B 11 GLU B 69 ASP B 100 MET B 101 SITE 2 AC5 6 ASP B 103 ASP B 136 SITE 1 AC6 6 ASN B 102 ASN B 104 ASP B 134 ASP B 136 SITE 2 AC6 6 ASN B 142 ASP B 194 SITE 1 AC7 4 GLU C 11 ASP C 67 GLU C 69 ASP C 103 SITE 1 AC8 6 GLU C 11 GLU C 69 ASP C 100 MET C 101 SITE 2 AC8 6 ASP C 103 ASP C 136 SITE 1 AC9 6 ASN C 102 ASN C 104 ASP C 134 ASP C 136 SITE 2 AC9 6 ASN C 142 ASP C 194 SITE 1 BC1 5 ASP B 44 GLU C 119 ASP C 215 HOH C 459 SITE 2 BC1 5 HOH C 506 CRYST1 175.504 65.791 102.505 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005698 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009756 0.00000